RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 S4R3F8 94 aa8.19□□□□□ -1.1
USP47-202ENST00000339865 NOTCH1P46531 2555 aa8.19□□□□□ -1.1
USP47-202ENST00000339865 Q5XG85 94 aa8.19□□□□□ -1.1
USP47-202ENST00000339865 COL6A5A8TX70 2615 aa8.19□□□□□ -1.1
USP47-202ENST00000339865 PRR34Q9NV39 138 aa8.19□□□□□ -1.1
USP47-202ENST00000339865 R4GN34 69 aa8.18□□□□□ -1.1
USP47-202ENST00000339865 Q5VV11 94 aa8.17□□□□□ -1.1
USP47-202ENST00000339865 BRCA2P51587 3418 aa8.16□□□□□ -1.1
USP47-202ENST00000339865 KRTAP10-11P60412 298 aa8.15□□□□□ -1.1
USP47-202ENST00000339865 ROMO1P60602 79 aa8.15□□□□□ -1.11
USP47-202ENST00000339865 FP248Q71RG6 208 aaPredicted RBP8.15□□□□□ -1.11
USP47-202ENST00000339865 COL4A2P08572 1712 aa8.14□□□□□ -1.11
USP47-202ENST00000339865 TEX15Q9BXT5 2789 aa8.14□□□□□ -1.11
USP47-202ENST00000339865 C19orf73Q9NVV2 129 aa8.13□□□□□ -1.11
USP47-202ENST00000339865 TRIOO75962 3097 aa8.12□□□□□ -1.11
USP47-202ENST00000339865 NSD1Q96L73 2696 aaPredicted RBP8.12□□□□□ -1.11
USP47-202ENST00000339865 LAMA3Q16787 3333 aa8.12□□□□□ -1.11
USP47-202ENST00000339865 DSPP15924 2871 aaKnown RBP8.11□□□□□ -1.11
USP47-202ENST00000339865 UNC79Q9P2D8 2635 aa8.1□□□□□ -1.11
USP47-202ENST00000339865 FLNAP21333 2647 aaKnown RBP8.1□□□□□ -1.11
USP47-202ENST00000339865 CNBPP62633 177 aaKnown RBP8.1□□□□□ -1.11
USP47-202ENST00000339865 LINC00612Q8N6U2 182 aa8.1□□□□□ -1.11
USP47-202ENST00000339865 VPS13AQ96RL7 3174 aa8.09□□□□□ -1.11
USP47-202ENST00000339865 FLNBO75369 2602 aaKnown RBP8.08□□□□□ -1.12
USP47-202ENST00000339865 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.06□□□□□ -1.12
USP47-202ENST00000339865 UNC80Q8N2C7 3258 aa8.06□□□□□ -1.12
USP47-202ENST00000339865 GIG44P09565 113 aaPredicted RBP8.06□□□□□ -1.12
USP47-202ENST00000339865 RPL37P61927 97 aaKnown RBP8.06□□□□□ -1.12
USP47-202ENST00000339865 CASC10Q5T4H9 136 aa8.06□□□□□ -1.12
USP47-202ENST00000339865 CYSTM1Q9H1C7 97 aa8.06□□□□□ -1.12
USP47-202ENST00000339865 TNP2Q05952 138 aa8.04□□□□□ -1.12
USP47-202ENST00000339865 SZT2Q5T011 3432 aa8.03□□□□□ -1.12
USP47-202ENST00000339865 SEC61BP60468 96 aaKnown RBP8.02□□□□□ -1.13
USP47-202ENST00000339865 ZCCHC13Q8WW36 166 aaKnown RBP8.01□□□□□ -1.13
USP47-202ENST00000339865 HELZ2Q9BYK8 2649 aaKnown RBP8.01□□□□□ -1.13
USP47-202ENST00000339865 MAP1AP78559 2803 aaPredicted RBP7.99□□□□□ -1.13
USP47-202ENST00000339865 C10orf142B7Z368 130 aa7.98□□□□□ -1.13
USP47-202ENST00000339865 GCN1Q92616 2671 aaKnown RBP7.97□□□□□ -1.13
USP47-202ENST00000339865 Q5W150 140 aa7.96□□□□□ -1.13
USP47-202ENST00000339865 M0QZ58 72 aa7.96□□□□□ -1.14
USP47-202ENST00000339865 MMP24-AS1A0A0U1RRL7 71 aa7.94□□□□□ -1.14
USP47-202ENST00000339865 C20orf166-AS1Q96NR2 134 aa7.94□□□□□ -1.14
USP47-202ENST00000339865 TEP1Q99973 2627 aaKnown RBP7.93□□□□□ -1.14
USP47-202ENST00000339865 APCP25054 2843 aa7.93□□□□□ -1.14
USP47-202ENST00000339865 UTP20O75691 2785 aaKnown RBP7.92□□□□□ -1.14
USP47-202ENST00000339865 SPATA8Q6RVD6 105 aa7.91□□□□□ -1.14
USP47-202ENST00000339865 PRUNE2Q8WUY3 3088 aa7.91□□□□□ -1.14
USP47-202ENST00000339865 TRANK1O15050 2925 aa7.91□□□□□ -1.14
USP47-202ENST00000339865 NDUFAF8A1L188 74 aa7.89□□□□□ -1.15
USP47-202ENST00000339865 Q8NDZ9 215 aa7.88□□□□□ -1.15
USP47-202ENST00000339865 A0A096LNT2 108 aa7.87□□□□□ -1.15
USP47-202ENST00000339865 HTTP42858 3142 aa7.85□□□□□ -1.15
USP47-202ENST00000339865 OXTP01178 125 aa7.85□□□□□ -1.15
USP47-202ENST00000339865 ADM2Q7Z4H4 148 aa7.85□□□□□ -1.15
USP47-202ENST00000339865 KLK9Q2XQG4 91 aa7.85□□□□□ -1.15
USP47-202ENST00000339865 IGSF10Q6WRI0 2623 aa7.83□□□□□ -1.16
USP47-202ENST00000339865 FRYQ5TBA9 3013 aa7.82□□□□□ -1.16
USP47-202ENST00000339865 ASB16-AS1Q495Z4 193 aa7.81□□□□□ -1.16
USP47-202ENST00000339865 ITPR2Q14571 2701 aa7.81□□□□□ -1.16
USP47-202ENST00000339865 NBEAL2Q6ZNJ1 2754 aa7.8□□□□□ -1.16
USP47-202ENST00000339865 SPEGQ15772 3267 aa7.79□□□□□ -1.16
USP47-202ENST00000339865 KALRNO60229 2985 aa7.79□□□□□ -1.16
USP47-202ENST00000339865 COL12A1Q99715 3063 aa7.78□□□□□ -1.16
USP47-202ENST00000339865 MYO15AQ9UKN7 3530 aa7.78□□□□□ -1.16
USP47-202ENST00000339865 MGAQ8IWI9 3026 aa7.78□□□□□ -1.16
USP47-202ENST00000339865 ASH1LQ9NR48 2969 aaKnown RBP7.78□□□□□ -1.16
USP47-202ENST00000339865 KRTAP10-3P60369 221 aa7.78□□□□□ -1.16
USP47-202ENST00000339865 LINC00472Q9H8W2 130 aa7.78□□□□□ -1.16
USP47-202ENST00000339865 KRTAP25-1Q3LHN0 102 aa7.77□□□□□ -1.17
USP47-202ENST00000339865 WDFY4Q6ZS81 3184 aa7.76□□□□□ -1.17
USP47-202ENST00000339865 LRBAP50851 2863 aa7.75□□□□□ -1.17
USP47-202ENST00000339865 UBR5O95071 2799 aaPredicted RBP7.74□□□□□ -1.17
USP47-202ENST00000339865 COL6A3P12111 3177 aa7.74□□□□□ -1.17
USP47-202ENST00000339865 CFAP47Q6ZTR5 3102 aa7.73□□□□□ -1.17
USP47-202ENST00000339865 ITPR1Q14643 2758 aa7.73□□□□□ -1.17
USP47-202ENST00000339865 CHD7Q9P2D1 2997 aa7.73□□□□□ -1.17
USP47-202ENST00000339865 FRYLO94915 3013 aa7.72□□□□□ -1.17
USP47-202ENST00000339865 DMXL2Q8TDJ6 3036 aa7.72□□□□□ -1.17
USP47-202ENST00000339865 SETXQ7Z333 2677 aaKnown RBP7.71□□□□□ -1.18
USP47-202ENST00000339865 CHD9Q3L8U1 2897 aa7.71□□□□□ -1.18
USP47-202ENST00000339865 USP34Q70CQ2 3546 aa7.7□□□□□ -1.18
USP47-202ENST00000339865 VCANP13611 3396 aa7.7□□□□□ -1.18
USP47-202ENST00000339865 LAMA1P25391 3075 aa7.68□□□□□ -1.18
USP47-202ENST00000339865 WDFY3Q8IZQ1 3526 aa7.65□□□□□ -1.18
USP47-202ENST00000339865 C10orf95Q9H7T3 257 aa7.65□□□□□ -1.19
USP47-202ENST00000339865 KRTAP26-1Q6PEX3 210 aa7.65□□□□□ -1.19
USP47-202ENST00000339865 PANO1I0J062 215 aa7.64□□□□□ -1.19
USP47-202ENST00000339865 PLAC8Q9NZF1 115 aa7.64□□□□□ -1.19
USP47-202ENST00000339865 P0C880 135 aa7.64□□□□□ -1.19
USP47-202ENST00000339865 CRYBG3Q68DQ2 2970 aa7.63□□□□□ -1.19
USP47-202ENST00000339865 A8MU10 97 aa7.63□□□□□ -1.19
USP47-202ENST00000339865 KMT2BQ9UMN6 2715 aaPredicted RBP7.63□□□□□ -1.19
USP47-202ENST00000339865 SPRR1AP35321 89 aa7.62□□□□□ -1.19
USP47-202ENST00000339865 Q6ZR54 194 aa7.61□□□□□ -1.19
USP47-202ENST00000339865 A6NN06 94 aa7.6□□□□□ -1.19
USP47-202ENST00000339865 ZNF292O60281 2723 aa7.57□□□□□ -1.2
USP47-202ENST00000339865 ATMQ13315 3056 aa7.56□□□□□ -1.2
USP47-202ENST00000339865 LCE6AA0A183 80 aa7.55□□□□□ -1.2
USP47-202ENST00000339865 A8MUU9 505 aa7.55□□□□□ -1.2
USP47-202ENST00000339865 BOD1L1Q8NFC6 3051 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms