RNA–Protein interactions for RNA: ENST00000334504.11

COL4A6-201, Transcript of collagen type IV alpha 6 chain, humanhuman

APPRIS P1 TSL 5 BASIC

Gene COL4A6, Length 6,700 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-201ENST00000334504 A6NN06 94 aa5.98□□□□□ -1.45
COL4A6-201ENST00000334504 SPRR1AP35321 89 aa5.97□□□□□ -1.45
COL4A6-201ENST00000334504 R4GN34 69 aa5.96□□□□□ -1.46
COL4A6-201ENST00000334504 KRTAP26-1Q6PEX3 210 aa5.95□□□□□ -1.46
COL4A6-201ENST00000334504 SPATA8Q6RVD6 105 aa5.94□□□□□ -1.46
COL4A6-201ENST00000334504 BPTFQ12830 3046 aa5.93□□□□□ -1.46
COL4A6-201ENST00000334504 C5orf42Q9H799 3197 aa5.93□□□□□ -1.46
COL4A6-201ENST00000334504 MAST4O15021 2626 aa5.91□□□□□ -1.46
COL4A6-201ENST00000334504 SPRR1BP22528 89 aa5.91□□□□□ -1.46
COL4A6-201ENST00000334504 KRTAP1-3Q8IUG1 177 aa5.91□□□□□ -1.46
COL4A6-201ENST00000334504 ATRQ13535 2644 aa5.9□□□□□ -1.46
COL4A6-201ENST00000334504 KRTAP25-1Q3LHN0 102 aa5.9□□□□□ -1.46
COL4A6-201ENST00000334504 PLAC8Q9NZF1 115 aa5.88□□□□□ -1.47
COL4A6-201ENST00000334504 Q6ZR54 194 aa5.88□□□□□ -1.47
COL4A6-201ENST00000334504 HELZ2Q9BYK8 2649 aaKnown RBP5.88□□□□□ -1.47
COL4A6-201ENST00000334504 KRTAP1-1Q07627 177 aa5.88□□□□□ -1.47
COL4A6-201ENST00000334504 M0QZ58 72 aa5.87□□□□□ -1.47
COL4A6-201ENST00000334504 ADM2Q7Z4H4 148 aa5.85□□□□□ -1.47
COL4A6-201ENST00000334504 NDUFAF8A1L188 74 aa5.84□□□□□ -1.47
COL4A6-201ENST00000334504 PRRC2CQ9Y520 2896 aaKnown RBP5.84□□□□□ -1.47
COL4A6-201ENST00000334504 KRTAP29-1A8MX34 341 aaPredicted RBP5.83□□□□□ -1.48
COL4A6-201ENST00000334504 CEP350Q5VT06 3117 aa5.83□□□□□ -1.48
COL4A6-201ENST00000334504 ITPR3Q14573 2671 aa5.8□□□□□ -1.48
COL4A6-201ENST00000334504 PLAC4Q8WY50 150 aa5.8□□□□□ -1.48
COL4A6-201ENST00000334504 FLNAP21333 2647 aaKnown RBP5.79□□□□□ -1.48
COL4A6-201ENST00000334504 A8MU10 97 aa5.79□□□□□ -1.48
COL4A6-201ENST00000334504 CFAP46Q8IYW2 2715 aa5.78□□□□□ -1.48
COL4A6-201ENST00000334504 SEC61BP60468 96 aaKnown RBP5.78□□□□□ -1.48
COL4A6-201ENST00000334504 C20orf166-AS1Q96NR2 134 aa5.75□□□□□ -1.49
COL4A6-201ENST00000334504 PANO1I0J062 215 aa5.75□□□□□ -1.49
COL4A6-201ENST00000334504 BRCA2P51587 3418 aa5.74□□□□□ -1.49
COL4A6-201ENST00000334504 MKI67P46013 3256 aaKnown RBP5.74□□□□□ -1.49
COL4A6-201ENST00000334504 SETXQ7Z333 2677 aaKnown RBP5.73□□□□□ -1.49
COL4A6-201ENST00000334504 A0A087X002 238 aa5.72□□□□□ -1.49
COL4A6-201ENST00000334504 LCE6AA0A183 80 aa5.72□□□□□ -1.49
COL4A6-201ENST00000334504 NOTCH2NLQ7Z3S9 236 aa5.72□□□□□ -1.49
COL4A6-201ENST00000334504 KRTAP4-16G5E9R7 235 aaPredicted RBP5.72□□□□□ -1.49
COL4A6-201ENST00000334504 KRTAP1-5Q9BYS1 174 aa5.7□□□□□ -1.5
COL4A6-201ENST00000334504 STAB1Q9NY15 2570 aa5.7□□□□□ -1.5
COL4A6-201ENST00000334504 DNAH14Q0VDD8 3507 aa5.68□□□□□ -1.5
COL4A6-201ENST00000334504 KRTAP10-2P60368 255 aa5.67□□□□□ -1.5
COL4A6-201ENST00000334504 KRTAP10-1P60331 282 aa5.66□□□□□ -1.5
COL4A6-201ENST00000334504 TEP1Q99973 2627 aaKnown RBP5.65□□□□□ -1.5
COL4A6-201ENST00000334504 A8MUU9 505 aa5.64□□□□□ -1.51
COL4A6-201ENST00000334504 CENPEQ02224 2701 aa5.63□□□□□ -1.51
COL4A6-201ENST00000334504 XIRP2A4UGR9 3374 aa5.62□□□□□ -1.51
COL4A6-201ENST00000334504 TEX15Q9BXT5 2789 aa5.61□□□□□ -1.51
COL4A6-201ENST00000334504 BAHCC1Q9P281 2608 aa5.6□□□□□ -1.51
COL4A6-201ENST00000334504 C10orf95Q9H7T3 257 aa5.59□□□□□ -1.51
COL4A6-201ENST00000334504 KRTAP11-1Q8IUC1 163 aa5.58□□□□□ -1.52
COL4A6-201ENST00000334504 AKAP13Q12802 2813 aa5.56□□□□□ -1.52
COL4A6-201ENST00000334504 LAMA3Q16787 3333 aa5.56□□□□□ -1.52
COL4A6-201ENST00000334504 CDH23Q9H251 3354 aa5.55□□□□□ -1.52
COL4A6-201ENST00000334504 FLG2Q5D862 2391 aaPredicted RBP5.55□□□□□ -1.52
COL4A6-201ENST00000334504 A0A0C4DFX4 3053 aa5.54□□□□□ -1.52
COL4A6-201ENST00000334504 SZT2Q5T011 3432 aa5.53□□□□□ -1.52
COL4A6-201ENST00000334504 CHD7Q9P2D1 2997 aa5.53□□□□□ -1.52
COL4A6-201ENST00000334504 COL6A5A8TX70 2615 aa5.51□□□□□ -1.53
COL4A6-201ENST00000334504 HTTP42858 3142 aa5.51□□□□□ -1.53
COL4A6-201ENST00000334504 CHD6Q8TD26 2715 aa5.5□□□□□ -1.53
COL4A6-201ENST00000334504 CELSR3Q9NYQ7 3312 aa5.48□□□□□ -1.53
COL4A6-201ENST00000334504 LAMA2P24043 3122 aaKnown RBP5.48□□□□□ -1.53
COL4A6-201ENST00000334504 KRTAP7-1Q8IUC3 87 aa5.47□□□□□ -1.53
COL4A6-201ENST00000334504 MGAQ8IWI9 3026 aa5.47□□□□□ -1.53
COL4A6-201ENST00000334504 TNP1P09430 55 aa5.47□□□□□ -1.53
COL4A6-201ENST00000334504 RANBP2P49792 3224 aaKnown RBP5.46□□□□□ -1.54
COL4A6-201ENST00000334504 UNC79Q9P2D8 2635 aa5.46□□□□□ -1.54
COL4A6-201ENST00000334504 UNC80Q8N2C7 3258 aa5.46□□□□□ -1.54
COL4A6-201ENST00000334504 NBEAL1Q6ZS30 2694 aa5.45□□□□□ -1.54
COL4A6-201ENST00000334504 CFAP54Q96N23 3096 aa5.43□□□□□ -1.54
COL4A6-201ENST00000334504 RPS29P62273 56 aaKnown RBP5.43□□□□□ -1.54
COL4A6-201ENST00000334504 A0A1B0GVY2 172 aa5.41□□□□□ -1.54
COL4A6-201ENST00000334504 KRTAP13-2Q52LG2 175 aa5.41□□□□□ -1.54
COL4A6-201ENST00000334504 TRIOO75962 3097 aa5.4□□□□□ -1.55
COL4A6-201ENST00000334504 NOTCH1P46531 2555 aa5.39□□□□□ -1.55
COL4A6-201ENST00000334504 PRUNE2Q8WUY3 3088 aa5.38□□□□□ -1.55
COL4A6-201ENST00000334504 USP34Q70CQ2 3546 aa5.38□□□□□ -1.55
COL4A6-201ENST00000334504 KRTAP13-1Q8IUC0 172 aa5.38□□□□□ -1.55
COL4A6-201ENST00000334504 ZNF292O60281 2723 aa5.38□□□□□ -1.55
COL4A6-201ENST00000334504 DMBT1Q9UGM3 2413 aaPredicted RBP5.37□□□□□ -1.55
COL4A6-201ENST00000334504 CHD9Q3L8U1 2897 aa5.36□□□□□ -1.55
COL4A6-201ENST00000334504 WDFY4Q6ZS81 3184 aa5.36□□□□□ -1.55
COL4A6-201ENST00000334504 P0C880 135 aa5.36□□□□□ -1.55
COL4A6-201ENST00000334504 H0YAA0 97 aa5.35□□□□□ -1.55
COL4A6-201ENST00000334504 PP632Q6XCG6 107 aa5.35□□□□□ -1.55
COL4A6-201ENST00000334504 SPTBN5Q9NRC6 3674 aaKnown RBP5.35□□□□□ -1.55
COL4A6-201ENST00000334504 DSPP15924 2871 aaKnown RBP5.34□□□□□ -1.55
COL4A6-201ENST00000334504 Q6ZRN7 208 aaPredicted RBP5.33□□□□□ -1.56
COL4A6-201ENST00000334504 GCN1Q92616 2671 aaKnown RBP5.32□□□□□ -1.56
COL4A6-201ENST00000334504 FRYQ5TBA9 3013 aa5.32□□□□□ -1.56
COL4A6-201ENST00000334504 VCANP13611 3396 aa5.31□□□□□ -1.56
COL4A6-201ENST00000334504 IGSF10Q6WRI0 2623 aa5.31□□□□□ -1.56
COL4A6-201ENST00000334504 COL6A3P12111 3177 aa5.31□□□□□ -1.56
COL4A6-201ENST00000334504 KRTAP10-8P60410 259 aa5.3□□□□□ -1.56
COL4A6-201ENST00000334504 STAB2Q8WWQ8 2551 aa5.29□□□□□ -1.56
COL4A6-201ENST00000334504 ITPR2Q14571 2701 aa5.29□□□□□ -1.56
COL4A6-201ENST00000334504 LAMA1P25391 3075 aa5.28□□□□□ -1.56
COL4A6-201ENST00000334504 KRTAP21-3Q3LHN1 58 aa5.28□□□□□ -1.56
COL4A6-201ENST00000334504 MAP1AP78559 2803 aaPredicted RBP5.27□□□□□ -1.57
COL4A6-201ENST00000334504 VPS13AQ96RL7 3174 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 93 ms