RNA–Protein interactions for RNA: ENST00000334414.10

PTPRB-202, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPRB, Length 12,316 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-202ENST00000334414 Q6ZRN7 208 aaPredicted RBP3.1□□□□□ -1.91
PTPRB-202ENST00000334414 A8MU10 97 aa3.1□□□□□ -1.91
PTPRB-202ENST00000334414 C10orf95Q9H7T3 257 aa3.1□□□□□ -1.91
PTPRB-202ENST00000334414 FLG2Q5D862 2391 aaPredicted RBP3.09□□□□□ -1.91
PTPRB-202ENST00000334414 ACANP16112 2415 aa3.09□□□□□ -1.91
PTPRB-202ENST00000334414 BDP1A6H8Y1 2624 aa3.09□□□□□ -1.91
PTPRB-202ENST00000334414 FN1P02751 2386 aaKnown RBP3.09□□□□□ -1.91
PTPRB-202ENST00000334414 CHD8Q9HCK8 2581 aa3.07□□□□□ -1.92
PTPRB-202ENST00000334414 SETD2Q9BYW2 2564 aaPredicted RBP3.07□□□□□ -1.92
PTPRB-202ENST00000334414 P0C880 135 aa3.07□□□□□ -1.92
PTPRB-202ENST00000334414 ABCA12Q86UK0 2595 aa3.07□□□□□ -1.92
PTPRB-202ENST00000334414 POLQO75417 2590 aa3.06□□□□□ -1.92
PTPRB-202ENST00000334414 NCOR2Q9Y618 2525 aa3.06□□□□□ -1.92
PTPRB-202ENST00000334414 NOTCH2Q04721 2471 aa3.05□□□□□ -1.92
PTPRB-202ENST00000334414 PKD1L2Q7Z442 2459 aa3.05□□□□□ -1.92
PTPRB-202ENST00000334414 SPTBN4Q9H254 2564 aa3.04□□□□□ -1.92
PTPRB-202ENST00000334414 WDR87Q6ZQQ6 2873 aa3.04□□□□□ -1.92
PTPRB-202ENST00000334414 KRTAP10-1P60331 282 aa3.04□□□□□ -1.92
PTPRB-202ENST00000334414 MTORP42345 2549 aa3.03□□□□□ -1.93
PTPRB-202ENST00000334414 H0YAA0 97 aa3.02□□□□□ -1.93
PTPRB-202ENST00000334414 KRTAP10-2P60368 255 aa3.02□□□□□ -1.93
PTPRB-202ENST00000334414 ANKRD11Q6UB99 2663 aaPredicted RBP3.01□□□□□ -1.93
PTPRB-202ENST00000334414 KRTAP13-2Q52LG2 175 aa3□□□□□ -1.93
PTPRB-202ENST00000334414 USP9XQ93008 2570 aaPredicted RBP3□□□□□ -1.93
PTPRB-202ENST00000334414 KRTAP7-1Q8IUC3 87 aa2.99□□□□□ -1.93
PTPRB-202ENST00000334414 USP9YO00507 2555 aaPredicted RBP2.95□□□□□ -1.94
PTPRB-202ENST00000334414 PRO2289Q9P1D8 64 aa2.95□□□□□ -1.94
PTPRB-202ENST00000334414 GOLGB1Q14789 3259 aaKnown RBP2.94□□□□□ -1.94
PTPRB-202ENST00000334414 JMJD1CQ15652 2540 aa2.93□□□□□ -1.94
PTPRB-202ENST00000334414 CEP295Q9C0D2 2601 aa2.93□□□□□ -1.94
PTPRB-202ENST00000334414 SRCAPQ6ZRS2 3230 aa2.93□□□□□ -1.94
PTPRB-202ENST00000334414 FASNP49327 2511 aaKnown RBP2.92□□□□□ -1.94
PTPRB-202ENST00000334414 INE1O15225 51 aa2.92□□□□□ -1.94
PTPRB-202ENST00000334414 TPRXLQ17RH7 258 aa2.91□□□□□ -1.94
PTPRB-202ENST00000334414 EPG5Q9HCE0 2579 aa2.91□□□□□ -1.94
PTPRB-202ENST00000334414 XP32Q5T750 250 aa2.89□□□□□ -1.95
PTPRB-202ENST00000334414 USP24Q9UPU5 2620 aa2.88□□□□□ -1.95
PTPRB-202ENST00000334414 DNAH12Q6ZR08 3092 aa2.88□□□□□ -1.95
PTPRB-202ENST00000334414 KMT2BQ9UMN6 2715 aaPredicted RBP2.87□□□□□ -1.95
PTPRB-202ENST00000334414 KRTAP13-4Q3LI77 160 aa2.87□□□□□ -1.95
PTPRB-202ENST00000334414 KRTAP13-3Q3SY46 172 aa2.87□□□□□ -1.95
PTPRB-202ENST00000334414 FLNAP21333 2647 aaKnown RBP2.86□□□□□ -1.95
PTPRB-202ENST00000334414 KRTAP1-4P0C5Y4 121 aa2.86□□□□□ -1.95
PTPRB-202ENST00000334414 KRTAP21-3Q3LHN1 58 aa2.85□□□□□ -1.95
PTPRB-202ENST00000334414 TRANK1O15050 2925 aa2.85□□□□□ -1.95
PTPRB-202ENST00000334414 KRTAP10-8P60410 259 aa2.84□□□□□ -1.96
PTPRB-202ENST00000334414 CENPEQ02224 2701 aa2.83□□□□□ -1.96
PTPRB-202ENST00000334414 BPTFQ12830 3046 aa2.82□□□□□ -1.96
PTPRB-202ENST00000334414 CENPFP49454 3210 aa2.81□□□□□ -1.96
PTPRB-202ENST00000334414 UTRNP46939 3433 aa2.78□□□□□ -1.96
PTPRB-202ENST00000334414 CEP350Q5VT06 3117 aa2.78□□□□□ -1.96
PTPRB-202ENST00000334414 KRTAP12-2P59991 146 aa2.78□□□□□ -1.96
PTPRB-202ENST00000334414 DMBT1Q9UGM3 2413 aaPredicted RBP2.77□□□□□ -1.97
PTPRB-202ENST00000334414 PRRC2CQ9Y520 2896 aaKnown RBP2.77□□□□□ -1.97
PTPRB-202ENST00000334414 NBEAL1Q6ZS30 2694 aa2.77□□□□□ -1.97
PTPRB-202ENST00000334414 MGAM2Q2M2H8 2515 aa2.75□□□□□ -1.97
PTPRB-202ENST00000334414 GCN1Q92616 2671 aaKnown RBP2.75□□□□□ -1.97
PTPRB-202ENST00000334414 KRTAP15-1Q3LI76 137 aa2.74□□□□□ -1.97
PTPRB-202ENST00000334414 ITPR3Q14573 2671 aa2.74□□□□□ -1.97
PTPRB-202ENST00000334414 HECTD1Q9ULT8 2610 aa2.74□□□□□ -1.97
PTPRB-202ENST00000334414 CHD7Q9P2D1 2997 aa2.74□□□□□ -1.97
PTPRB-202ENST00000334414 KRTAP12-1P59990 96 aa2.74□□□□□ -1.97
PTPRB-202ENST00000334414 MAST4O15021 2626 aa2.73□□□□□ -1.97
PTPRB-202ENST00000334414 AKAP13Q12802 2813 aa2.72□□□□□ -1.97
PTPRB-202ENST00000334414 HTTP42858 3142 aa2.72□□□□□ -1.97
PTPRB-202ENST00000334414 KRTAP23-1A1A580 65 aa2.72□□□□□ -1.97
PTPRB-202ENST00000334414 ATRQ13535 2644 aa2.71□□□□□ -1.98
PTPRB-202ENST00000334414 NOTCH1P46531 2555 aa2.7□□□□□ -1.98
PTPRB-202ENST00000334414 CHD9Q3L8U1 2897 aa2.69□□□□□ -1.98
PTPRB-202ENST00000334414 ZNF292O60281 2723 aa2.69□□□□□ -1.98
PTPRB-202ENST00000334414 STAB1Q9NY15 2570 aa2.69□□□□□ -1.98
PTPRB-202ENST00000334414 KRTAP10-10P60014 251 aa2.68□□□□□ -1.98
PTPRB-202ENST00000334414 HELZ2Q9BYK8 2649 aaKnown RBP2.67□□□□□ -1.98
PTPRB-202ENST00000334414 UNC79Q9P2D8 2635 aa2.66□□□□□ -1.98
PTPRB-202ENST00000334414 CFAP46Q8IYW2 2715 aa2.66□□□□□ -1.98
PTPRB-202ENST00000334414 PCNTO95613 3336 aa2.66□□□□□ -1.98
PTPRB-202ENST00000334414 STAB2Q8WWQ8 2551 aa2.65□□□□□ -1.99
PTPRB-202ENST00000334414 C5orf42Q9H799 3197 aa2.65□□□□□ -1.99
PTPRB-202ENST00000334414 CHD6Q8TD26 2715 aa2.64□□□□□ -1.99
PTPRB-202ENST00000334414 TEP1Q99973 2627 aaKnown RBP2.64□□□□□ -1.99
PTPRB-202ENST00000334414 COL6A5A8TX70 2615 aa2.62□□□□□ -1.99
PTPRB-202ENST00000334414 A0A1B0GVY2 172 aa2.61□□□□□ -1.99
PTPRB-202ENST00000334414 MKI67P46013 3256 aaKnown RBP2.61□□□□□ -1.99
PTPRB-202ENST00000334414 FLNBO75369 2602 aaKnown RBP2.6□□□□□ -1.99
PTPRB-202ENST00000334414 RANBP2P49792 3224 aaKnown RBP2.6□□□□□ -1.99
PTPRB-202ENST00000334414 LAMA2P24043 3122 aaKnown RBP2.6□□□□□ -1.99
PTPRB-202ENST00000334414 MAP1AP78559 2803 aaPredicted RBP2.6□□□□□ -1.99
PTPRB-202ENST00000334414 KRTAP10-6P60371 365 aaPredicted RBP2.59□□□□□ -1.99
PTPRB-202ENST00000334414 NSD1Q96L73 2696 aaPredicted RBP2.59□□□□□ -1.99
PTPRB-202ENST00000334414 SETXQ7Z333 2677 aaKnown RBP2.59□□□□□ -2
PTPRB-202ENST00000334414 BAHCC1Q9P281 2608 aa2.58□□□□□ -2
PTPRB-202ENST00000334414 KRTAP3-1Q9BYR8 98 aa2.58□□□□□ -2
PTPRB-202ENST00000334414 LAMA3Q16787 3333 aa2.58□□□□□ -2
PTPRB-202ENST00000334414 BRCA2P51587 3418 aa2.56□□□□□ -2
PTPRB-202ENST00000334414 PRUNE2Q8WUY3 3088 aa2.56□□□□□ -2
PTPRB-202ENST00000334414 APCP25054 2843 aa2.55□□□□□ -2
PTPRB-202ENST00000334414 TRIOO75962 3097 aa2.55□□□□□ -2
PTPRB-202ENST00000334414 ITPR2Q14571 2701 aa2.55□□□□□ -2
PTPRB-202ENST00000334414 ITPR1Q14643 2758 aa2.54□□□□□ -2
PTPRB-202ENST00000334414 MGAQ8IWI9 3026 aa2.52□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms