RNA–Protein interactions for RNA: ENST00000310441.11

HCFC1-201, Transcript of host cell factor C1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HCFC1, Length 8,869 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-201ENST00000310441 Q8N9P0 234 aaPredicted RBP9.72□□□□□ -0.85
HCFC1-201ENST00000310441 R4GN34 69 aa9.7□□□□□ -0.86
HCFC1-201ENST00000310441 DNAH12Q6ZR08 3092 aa9.7□□□□□ -0.86
HCFC1-201ENST00000310441 BAHCC1Q9P281 2608 aa9.68□□□□□ -0.86
HCFC1-201ENST00000310441 SPINK7P58062 85 aa9.67□□□□□ -0.86
HCFC1-201ENST00000310441 ROMO1P60602 79 aa9.65□□□□□ -0.86
HCFC1-201ENST00000310441 A0A096LNT2 108 aa9.65□□□□□ -0.87
HCFC1-201ENST00000310441 KRTAP16-1A8MUX0 517 aa9.64□□□□□ -0.87
HCFC1-201ENST00000310441 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.64□□□□□ -0.87
HCFC1-201ENST00000310441 ZNF292O60281 2723 aa9.63□□□□□ -0.87
HCFC1-201ENST00000310441 MMP24-AS1A0A0U1RRL7 71 aa9.61□□□□□ -0.87
HCFC1-201ENST00000310441 APCP25054 2843 aa9.61□□□□□ -0.87
HCFC1-201ENST00000310441 SEC61BP60468 96 aaKnown RBP9.61□□□□□ -0.87
HCFC1-201ENST00000310441 Q5VV11 94 aa9.61□□□□□ -0.87
HCFC1-201ENST00000310441 Q5XG85 94 aa9.61□□□□□ -0.87
HCFC1-201ENST00000310441 RPL37P61927 97 aaKnown RBP9.6□□□□□ -0.87
HCFC1-201ENST00000310441 MAP1AP78559 2803 aaPredicted RBP9.59□□□□□ -0.87
HCFC1-201ENST00000310441 SETXQ7Z333 2677 aaKnown RBP9.59□□□□□ -0.87
HCFC1-201ENST00000310441 PRAC1Q96KF2 57 aa9.58□□□□□ -0.88
HCFC1-201ENST00000310441 PLAC8Q9NZF1 115 aa9.58□□□□□ -0.88
HCFC1-201ENST00000310441 CASC10Q5T4H9 136 aa9.58□□□□□ -0.88
HCFC1-201ENST00000310441 Q5W150 140 aa9.57□□□□□ -0.88
HCFC1-201ENST00000310441 KRTAP10-3P60369 221 aa9.55□□□□□ -0.88
HCFC1-201ENST00000310441 SPRR1AP35321 89 aa9.52□□□□□ -0.88
HCFC1-201ENST00000310441 LINC00472Q9H8W2 130 aa9.52□□□□□ -0.89
HCFC1-201ENST00000310441 FP248Q71RG6 208 aaPredicted RBP9.51□□□□□ -0.89
HCFC1-201ENST00000310441 SPRR1BP22528 89 aa9.49□□□□□ -0.89
HCFC1-201ENST00000310441 GOLGB1Q14789 3259 aaKnown RBP9.48□□□□□ -0.89
HCFC1-201ENST00000310441 PCNTO95613 3336 aa9.47□□□□□ -0.89
HCFC1-201ENST00000310441 NSD1Q96L73 2696 aaPredicted RBP9.46□□□□□ -0.89
HCFC1-201ENST00000310441 H1FX-AS1Q4G0G2 97 aa9.46□□□□□ -0.9
HCFC1-201ENST00000310441 PLAC4Q8WY50 150 aa9.46□□□□□ -0.9
HCFC1-201ENST00000310441 CFAP54Q96N23 3096 aa9.43□□□□□ -0.9
HCFC1-201ENST00000310441 C5orf42Q9H799 3197 aa9.42□□□□□ -0.9
HCFC1-201ENST00000310441 M0QZ58 72 aa9.4□□□□□ -0.9
HCFC1-201ENST00000310441 Q6ZR54 194 aa9.4□□□□□ -0.91
HCFC1-201ENST00000310441 IGSF10Q6WRI0 2623 aa9.4□□□□□ -0.91
HCFC1-201ENST00000310441 UTP20O75691 2785 aaKnown RBP9.39□□□□□ -0.91
HCFC1-201ENST00000310441 NBEAL2Q6ZNJ1 2754 aa9.38□□□□□ -0.91
HCFC1-201ENST00000310441 KRTAP1-3Q8IUG1 177 aa9.32□□□□□ -0.92
HCFC1-201ENST00000310441 PANO1I0J062 215 aa9.28□□□□□ -0.92
HCFC1-201ENST00000310441 ITPR1Q14643 2758 aa9.27□□□□□ -0.92
HCFC1-201ENST00000310441 KRTAP1-1Q07627 177 aa9.27□□□□□ -0.93
HCFC1-201ENST00000310441 KRTAP26-1Q6PEX3 210 aa9.26□□□□□ -0.93
HCFC1-201ENST00000310441 A0A0C4DFX4 3053 aa9.26□□□□□ -0.93
HCFC1-201ENST00000310441 OXTP01178 125 aa9.26□□□□□ -0.93
HCFC1-201ENST00000310441 ADM2Q7Z4H4 148 aa9.25□□□□□ -0.93
HCFC1-201ENST00000310441 CYSTM1Q9H1C7 97 aa9.25□□□□□ -0.93
HCFC1-201ENST00000310441 Q5VSD8 79 aa9.22□□□□□ -0.93
HCFC1-201ENST00000310441 SPATA8Q6RVD6 105 aa9.21□□□□□ -0.93
HCFC1-201ENST00000310441 UBR5O95071 2799 aaPredicted RBP9.21□□□□□ -0.94
HCFC1-201ENST00000310441 UTRNP46939 3433 aa9.19□□□□□ -0.94
HCFC1-201ENST00000310441 RPS29P62273 56 aaKnown RBP9.18□□□□□ -0.94
HCFC1-201ENST00000310441 MGAQ8IWI9 3026 aa9.17□□□□□ -0.94
HCFC1-201ENST00000310441 LAMA2P24043 3122 aaKnown RBP9.15□□□□□ -0.94
HCFC1-201ENST00000310441 Q8NDZ9 215 aa9.15□□□□□ -0.94
HCFC1-201ENST00000310441 TRANK1O15050 2925 aa9.12□□□□□ -0.95
HCFC1-201ENST00000310441 KRTAP25-1Q3LHN0 102 aa9.12□□□□□ -0.95
HCFC1-201ENST00000310441 A0A087X002 238 aa9.07□□□□□ -0.96
HCFC1-201ENST00000310441 C20orf166-AS1Q96NR2 134 aa9.06□□□□□ -0.96
HCFC1-201ENST00000310441 KRTAP29-1A8MX34 341 aaPredicted RBP9.06□□□□□ -0.96
HCFC1-201ENST00000310441 NDUFAF8A1L188 74 aa9.04□□□□□ -0.96
HCFC1-201ENST00000310441 KRTAP4-16G5E9R7 235 aaPredicted RBP9.04□□□□□ -0.96
HCFC1-201ENST00000310441 DSPP15924 2871 aaKnown RBP9.03□□□□□ -0.96
HCFC1-201ENST00000310441 FRYQ5TBA9 3013 aa9.02□□□□□ -0.97
HCFC1-201ENST00000310441 LCE6AA0A183 80 aa9□□□□□ -0.97
HCFC1-201ENST00000310441 FRYLO94915 3013 aa9□□□□□ -0.97
HCFC1-201ENST00000310441 A6NN06 94 aa8.99□□□□□ -0.97
HCFC1-201ENST00000310441 A8MUU9 505 aa8.99□□□□□ -0.97
HCFC1-201ENST00000310441 KRTAP1-5Q9BYS1 174 aa8.97□□□□□ -0.97
HCFC1-201ENST00000310441 LRBAP50851 2863 aa8.97□□□□□ -0.97
HCFC1-201ENST00000310441 KRTAP10-1P60331 282 aa8.96□□□□□ -0.98
HCFC1-201ENST00000310441 VPS13AQ96RL7 3174 aa8.94□□□□□ -0.98
HCFC1-201ENST00000310441 CHD7Q9P2D1 2997 aa8.93□□□□□ -0.98
HCFC1-201ENST00000310441 TNP1P09430 55 aa8.9□□□□□ -0.98
HCFC1-201ENST00000310441 PP632Q6XCG6 107 aa8.89□□□□□ -0.99
HCFC1-201ENST00000310441 KRTAP10-2P60368 255 aa8.87□□□□□ -0.99
HCFC1-201ENST00000310441 KALRNO60229 2985 aa8.87□□□□□ -0.99
HCFC1-201ENST00000310441 TRIOO75962 3097 aa8.85□□□□□ -0.99
HCFC1-201ENST00000310441 TENM1Q9UKZ4 2725 aa8.84□□□□□ -0.99
HCFC1-201ENST00000310441 FLNCQ14315 2725 aa8.83□□□□□ -1
HCFC1-201ENST00000310441 CHD9Q3L8U1 2897 aa8.81□□□□□ -1
HCFC1-201ENST00000310441 HIVEP1P15822 2718 aa8.81□□□□□ -1
HCFC1-201ENST00000310441 ASH1LQ9NR48 2969 aaKnown RBP8.81□□□□□ -1
HCFC1-201ENST00000310441 NOTCH2NLQ7Z3S9 236 aa8.81□□□□□ -1
HCFC1-201ENST00000310441 WDFY4Q6ZS81 3184 aa8.81□□□□□ -1
HCFC1-201ENST00000310441 NF1P21359 2839 aa8.79□□□□□ -1
HCFC1-201ENST00000310441 TENM3Q9P273 2699 aa8.76□□□□□ -1.01
HCFC1-201ENST00000310441 NIPBLQ6KC79 2804 aaeCLIP8.75□□□□□ -1.01
HCFC1-201ENST00000310441 PRUNE2Q8WUY3 3088 aa8.75□□□□□ -1.01
HCFC1-201ENST00000310441 C10orf95Q9H7T3 257 aa8.73□□□□□ -1.01
HCFC1-201ENST00000310441 A8MU10 97 aa8.71□□□□□ -1.01
HCFC1-201ENST00000310441 CRYBG3Q68DQ2 2970 aa8.67□□□□□ -1.02
HCFC1-201ENST00000310441 CELSR2Q9HCU4 2923 aa8.67□□□□□ -1.02
HCFC1-201ENST00000310441 KRTAP11-1Q8IUC1 163 aa8.66□□□□□ -1.02
HCFC1-201ENST00000310441 Q6ZRN7 208 aaPredicted RBP8.66□□□□□ -1.02
HCFC1-201ENST00000310441 XIRP2A4UGR9 3374 aa8.62□□□□□ -1.03
HCFC1-201ENST00000310441 COL12A1Q99715 3063 aa8.61□□□□□ -1.03
HCFC1-201ENST00000310441 TACC2O95359 2948 aa8.61□□□□□ -1.03
HCFC1-201ENST00000310441 DMXL2Q8TDJ6 3036 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms