RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 IGLV7-46A0A075B6I9 117 aa11.61□□□□□ -0.55
PCDH1-201ENST00000287008 ITPR2Q14571 2701 aa11.6□□□□□ -0.55
PCDH1-201ENST00000287008 PLAC8Q9NZF1 115 aa11.59□□□□□ -0.55
PCDH1-201ENST00000287008 FAM229BQ4G0N7 80 aa11.59□□□□□ -0.55
PCDH1-201ENST00000287008 ITPR1Q14643 2758 aa11.59□□□□□ -0.55
PCDH1-201ENST00000287008 FAM104AQ969W3 186 aa11.59□□□□□ -0.55
PCDH1-201ENST00000287008 Q6ZSA8 131 aa11.57□□□□□ -0.56
PCDH1-201ENST00000287008 A8MUN3 132 aa11.56□□□□□ -0.56
PCDH1-201ENST00000287008 C4orf26Q17RF5 130 aa11.56□□□□□ -0.56
PCDH1-201ENST00000287008 REV3LO60673 3130 aa11.55□□□□□ -0.56
PCDH1-201ENST00000287008 CYP4F30PQ9H0H9 118 aa11.53□□□□□ -0.56
PCDH1-201ENST00000287008 VPS13AQ96RL7 3174 aa11.53□□□□□ -0.56
PCDH1-201ENST00000287008 Q8N1X5 172 aa11.52□□□□□ -0.57
PCDH1-201ENST00000287008 TACC2O95359 2948 aa11.52□□□□□ -0.57
PCDH1-201ENST00000287008 XIRP2A4UGR9 3374 aa11.51□□□□□ -0.57
PCDH1-201ENST00000287008 KRTAP1-5Q9BYS1 174 aa11.48□□□□□ -0.57
PCDH1-201ENST00000287008 LCE6AA0A183 80 aa11.48□□□□□ -0.57
PCDH1-201ENST00000287008 SPRR1AP35321 89 aa11.45□□□□□ -0.58
PCDH1-201ENST00000287008 H7BZZ5 65 aa11.45□□□□□ -0.58
PCDH1-201ENST00000287008 LINC01554Q52M75 96 aa11.44□□□□□ -0.58
PCDH1-201ENST00000287008 MIR22HGQ0VDD5 57 aa11.43□□□□□ -0.58
PCDH1-201ENST00000287008 HIVEP1P15822 2718 aa11.42□□□□□ -0.58
PCDH1-201ENST00000287008 TENM4Q6N022 2769 aa11.42□□□□□ -0.58
PCDH1-201ENST00000287008 SPANXA2-OT1Q8N9U9 137 aa11.41□□□□□ -0.58
PCDH1-201ENST00000287008 UNC80Q8N2C7 3258 aa11.41□□□□□ -0.58
PCDH1-201ENST00000287008 Q8NDZ9 215 aa11.37□□□□□ -0.59
PCDH1-201ENST00000287008 CRIPTQ9P021 101 aa11.37□□□□□ -0.59
PCDH1-201ENST00000287008 FRYLO94915 3013 aa11.35□□□□□ -0.59
PCDH1-201ENST00000287008 M0R2T5 61 aa11.34□□□□□ -0.59
PCDH1-201ENST00000287008 SPRR1BP22528 89 aa11.34□□□□□ -0.59
PCDH1-201ENST00000287008 OCR1Q9BZK8 76 aa11.33□□□□□ -0.6
PCDH1-201ENST00000287008 KMT2BQ9UMN6 2715 aaPredicted RBP11.33□□□□□ -0.6
PCDH1-201ENST00000287008 COL12A1Q99715 3063 aa11.32□□□□□ -0.6
PCDH1-201ENST00000287008 KRTAP10-1P60331 282 aa11.32□□□□□ -0.6
PCDH1-201ENST00000287008 Q5VSD8 79 aa11.32□□□□□ -0.6
PCDH1-201ENST00000287008 KRTAP26-1Q6PEX3 210 aa11.32□□□□□ -0.6
PCDH1-201ENST00000287008 ATMQ13315 3056 aa11.32□□□□□ -0.6
PCDH1-201ENST00000287008 SPINT4Q6UDR6 99 aa11.31□□□□□ -0.6
PCDH1-201ENST00000287008 A0A0D9SG42 100 aa11.3□□□□□ -0.6
PCDH1-201ENST00000287008 KRTAP10-2P60368 255 aa11.29□□□□□ -0.6
PCDH1-201ENST00000287008 DMXL2Q8TDJ6 3036 aa11.29□□□□□ -0.6
PCDH1-201ENST00000287008 ZCCHC13Q8WW36 166 aaKnown RBP11.26□□□□□ -0.61
PCDH1-201ENST00000287008 MMP24-AS1A0A0U1RRL7 71 aa11.24□□□□□ -0.61
PCDH1-201ENST00000287008 HRES1P13985 223 aa11.24□□□□□ -0.61
PCDH1-201ENST00000287008 UTP20O75691 2785 aaKnown RBP11.23□□□□□ -0.61
PCDH1-201ENST00000287008 LAMA1P25391 3075 aa11.21□□□□□ -0.62
PCDH1-201ENST00000287008 Q6ZR54 194 aa11.2□□□□□ -0.62
PCDH1-201ENST00000287008 SEC61BP60468 96 aaKnown RBP11.2□□□□□ -0.62
PCDH1-201ENST00000287008 NIPBLQ6KC79 2804 aaeCLIP11.2□□□□□ -0.62
PCDH1-201ENST00000287008 LINC00472Q9H8W2 130 aa11.18□□□□□ -0.62
PCDH1-201ENST00000287008 CSAG1Q6PB30 78 aa11.17□□□□□ -0.62
PCDH1-201ENST00000287008 CDC42SE1Q9NRR8 79 aa11.16□□□□□ -0.62
PCDH1-201ENST00000287008 Q8N9P0 234 aaPredicted RBP11.15□□□□□ -0.62
PCDH1-201ENST00000287008 CAMK2N1Q7Z7J9 78 aa11.14□□□□□ -0.63
PCDH1-201ENST00000287008 SPINK7P58062 85 aa11.13□□□□□ -0.63
PCDH1-201ENST00000287008 BOD1L1Q8NFC6 3051 aa11.11□□□□□ -0.63
PCDH1-201ENST00000287008 PANO1I0J062 215 aa11.09□□□□□ -0.63
PCDH1-201ENST00000287008 A0A1B0GU33 70 aa11.08□□□□□ -0.64
PCDH1-201ENST00000287008 KALRNO60229 2985 aa11.08□□□□□ -0.64
PCDH1-201ENST00000287008 FREM2Q5SZK8 3169 aa11.08□□□□□ -0.64
PCDH1-201ENST00000287008 Q5W150 140 aa11.06□□□□□ -0.64
PCDH1-201ENST00000287008 CDH23Q9H251 3354 aa11.05□□□□□ -0.64
PCDH1-201ENST00000287008 ZZEF1O43149 2961 aa11.05□□□□□ -0.64
PCDH1-201ENST00000287008 ASH1LQ9NR48 2969 aaKnown RBP11.04□□□□□ -0.64
PCDH1-201ENST00000287008 CELSR2Q9HCU4 2923 aa11.04□□□□□ -0.64
PCDH1-201ENST00000287008 ADGRG4Q8IZF6 3080 aa11.03□□□□□ -0.64
PCDH1-201ENST00000287008 APCP25054 2843 aa11.02□□□□□ -0.65
PCDH1-201ENST00000287008 S4R3F8 94 aa11.02□□□□□ -0.65
PCDH1-201ENST00000287008 LINC00483Q53H64 154 aa11.01□□□□□ -0.65
PCDH1-201ENST00000287008 CRYBG3Q68DQ2 2970 aa11.01□□□□□ -0.65
PCDH1-201ENST00000287008 FP248Q71RG6 208 aaPredicted RBP11□□□□□ -0.65
PCDH1-201ENST00000287008 CELSR3Q9NYQ7 3312 aa10.99□□□□□ -0.65
PCDH1-201ENST00000287008 LRBAP50851 2863 aa10.97□□□□□ -0.65
PCDH1-201ENST00000287008 KRTAP4-16G5E9R7 235 aaPredicted RBP10.97□□□□□ -0.65
PCDH1-201ENST00000287008 KRTAP21-3Q3LHN1 58 aa10.96□□□□□ -0.65
PCDH1-201ENST00000287008 DNAH14Q0VDD8 3507 aa10.94□□□□□ -0.66
PCDH1-201ENST00000287008 OXTP01178 125 aa10.93□□□□□ -0.66
PCDH1-201ENST00000287008 Q1T7F1 81 aa10.93□□□□□ -0.66
PCDH1-201ENST00000287008 A0A087X002 238 aa10.92□□□□□ -0.66
PCDH1-201ENST00000287008 R4GN34 69 aa10.92□□□□□ -0.66
PCDH1-201ENST00000287008 NBEAQ8NFP9 2946 aa10.91□□□□□ -0.66
PCDH1-201ENST00000287008 Q6ZRN7 208 aaPredicted RBP10.9□□□□□ -0.66
PCDH1-201ENST00000287008 DCHS2Q6V1P9 2916 aa10.89□□□□□ -0.67
PCDH1-201ENST00000287008 TENM3Q9P273 2699 aa10.89□□□□□ -0.67
PCDH1-201ENST00000287008 ZANQ9Y493 2812 aa10.87□□□□□ -0.67
PCDH1-201ENST00000287008 DMAC1Q96GE9 116 aa10.86□□□□□ -0.67
PCDH1-201ENST00000287008 SZT2Q5T011 3432 aa10.86□□□□□ -0.67
PCDH1-201ENST00000287008 KTN1-AS1Q86SY8 53 aa10.86□□□□□ -0.67
PCDH1-201ENST00000287008 LINC01558Q9Y6Z2 57 aa10.85□□□□□ -0.67
PCDH1-201ENST00000287008 LCA10Q71F78 164 aa10.82□□□□□ -0.68
PCDH1-201ENST00000287008 Q75L30 129 aa10.8□□□□□ -0.68
PCDH1-201ENST00000287008 COL6A3P12111 3177 aa10.78□□□□□ -0.68
PCDH1-201ENST00000287008 VCANP13611 3396 aa10.78□□□□□ -0.68
PCDH1-201ENST00000287008 EYSQ5T1H1 3165 aa10.76□□□□□ -0.69
PCDH1-201ENST00000287008 LUZP6Q538Z0 58 aa10.74□□□□□ -0.69
PCDH1-201ENST00000287008 KRTAP11-1Q8IUC1 163 aa10.73□□□□□ -0.69
PCDH1-201ENST00000287008 RPS29P62273 56 aaKnown RBP10.69□□□□□ -0.7
PCDH1-201ENST00000287008 KRTAP29-1A8MX34 341 aaPredicted RBP10.68□□□□□ -0.7
PCDH1-201ENST00000287008 CYSTM1Q9H1C7 97 aa10.67□□□□□ -0.7
PCDH1-201ENST00000287008 ASB16-AS1Q495Z4 193 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms