RNA–Protein interactions for RNA: ENST00000273317.4

LIMD1-201, Transcript of LIM domains containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD1, Length 11,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-201ENST00000273317 HTTP42858 3142 aa5.14□□□□□ -1.59
LIMD1-201ENST00000273317 ANAPC11Q9NYG5 84 aa5.14□□□□□ -1.59
LIMD1-201ENST00000273317 K7EIL1 84 aa5.14□□□□□ -1.59
LIMD1-201ENST00000273317 A0A1W2PNM2 257 aa5.13□□□□□ -1.59
LIMD1-201ENST00000273317 LINC00483Q53H64 154 aa5.13□□□□□ -1.59
LIMD1-201ENST00000273317 NSD1Q96L73 2696 aaPredicted RBP5.12□□□□□ -1.59
LIMD1-201ENST00000273317 PSORS1C2Q9UIG4 136 aa5.12□□□□□ -1.59
LIMD1-201ENST00000273317 A0A096LNT2 108 aa5.11□□□□□ -1.59
LIMD1-201ENST00000273317 CFAP54Q96N23 3096 aa5.11□□□□□ -1.59
LIMD1-201ENST00000273317 IGLV7-46A0A075B6I9 117 aa5.1□□□□□ -1.59
LIMD1-201ENST00000273317 VCANP13611 3396 aa5.1□□□□□ -1.59
LIMD1-201ENST00000273317 FAM229BQ4G0N7 80 aa5.09□□□□□ -1.59
LIMD1-201ENST00000273317 RANBP2P49792 3224 aaKnown RBP5.09□□□□□ -1.59
LIMD1-201ENST00000273317 MYO15AQ9UKN7 3530 aa5.09□□□□□ -1.6
LIMD1-201ENST00000273317 ITPR1Q14643 2758 aa5.08□□□□□ -1.6
LIMD1-201ENST00000273317 UNC80Q8N2C7 3258 aa5.08□□□□□ -1.6
LIMD1-201ENST00000273317 A0A1B0GU33 70 aa5.08□□□□□ -1.6
LIMD1-201ENST00000273317 CHD9Q3L8U1 2897 aa5.07□□□□□ -1.6
LIMD1-201ENST00000273317 CSAG1Q6PB30 78 aa5.07□□□□□ -1.6
LIMD1-201ENST00000273317 FLNCQ14315 2725 aa5.06□□□□□ -1.6
LIMD1-201ENST00000273317 IGSF10Q6WRI0 2623 aa5.05□□□□□ -1.6
LIMD1-201ENST00000273317 DSPP15924 2871 aaKnown RBP5.05□□□□□ -1.6
LIMD1-201ENST00000273317 DMAC1Q96GE9 116 aa5.04□□□□□ -1.6
LIMD1-201ENST00000273317 LINC01558Q9Y6Z2 57 aa5.04□□□□□ -1.6
LIMD1-201ENST00000273317 HRES1P13985 223 aa5.03□□□□□ -1.6
LIMD1-201ENST00000273317 PRR26Q8N8Z3 221 aa5.03□□□□□ -1.6
LIMD1-201ENST00000273317 TRANK1O15050 2925 aa5.02□□□□□ -1.61
LIMD1-201ENST00000273317 KRTAP10-3P60369 221 aa5.01□□□□□ -1.61
LIMD1-201ENST00000273317 CASC10Q5T4H9 136 aa5.01□□□□□ -1.61
LIMD1-201ENST00000273317 NBEAL2Q6ZNJ1 2754 aa5□□□□□ -1.61
LIMD1-201ENST00000273317 SMR3BP02814 79 aaPredicted RBP5□□□□□ -1.61
LIMD1-201ENST00000273317 Q6ZSA8 131 aa5□□□□□ -1.61
LIMD1-201ENST00000273317 ZCCHC13Q8WW36 166 aaKnown RBP5□□□□□ -1.61
LIMD1-201ENST00000273317 CHD7Q9P2D1 2997 aa4.99□□□□□ -1.61
LIMD1-201ENST00000273317 Q8N9P0 234 aaPredicted RBP4.99□□□□□ -1.61
LIMD1-201ENST00000273317 S4R3F8 94 aa4.99□□□□□ -1.61
LIMD1-201ENST00000273317 A0A0A0MQY5 61 aa4.99□□□□□ -1.61
LIMD1-201ENST00000273317 CAMK2N1Q7Z7J9 78 aa4.99□□□□□ -1.61
LIMD1-201ENST00000273317 FRYLO94915 3013 aa4.99□□□□□ -1.61
LIMD1-201ENST00000273317 MMP24-AS1A0A0U1RRL7 71 aa4.98□□□□□ -1.61
LIMD1-201ENST00000273317 Q5XG85 94 aa4.98□□□□□ -1.61
LIMD1-201ENST00000273317 TRIOO75962 3097 aa4.98□□□□□ -1.61
LIMD1-201ENST00000273317 SZT2Q5T011 3432 aa4.97□□□□□ -1.61
LIMD1-201ENST00000273317 SPINK7P58062 85 aa4.97□□□□□ -1.61
LIMD1-201ENST00000273317 SPEGQ15772 3267 aa4.96□□□□□ -1.61
LIMD1-201ENST00000273317 ASB16-AS1Q495Z4 193 aa4.95□□□□□ -1.62
LIMD1-201ENST00000273317 LAMA1P25391 3075 aa4.95□□□□□ -1.62
LIMD1-201ENST00000273317 Q5VV11 94 aa4.95□□□□□ -1.62
LIMD1-201ENST00000273317 PRUNE2Q8WUY3 3088 aa4.94□□□□□ -1.62
LIMD1-201ENST00000273317 PLAC8Q9NZF1 115 aa4.94□□□□□ -1.62
LIMD1-201ENST00000273317 SPRR1AP35321 89 aa4.94□□□□□ -1.62
LIMD1-201ENST00000273317 Q5W150 140 aa4.94□□□□□ -1.62
LIMD1-201ENST00000273317 SPRR1BP22528 89 aa4.93□□□□□ -1.62
LIMD1-201ENST00000273317 LRBAP50851 2863 aa4.93□□□□□ -1.62
LIMD1-201ENST00000273317 FP248Q71RG6 208 aaPredicted RBP4.93□□□□□ -1.62
LIMD1-201ENST00000273317 KRTAP1-3Q8IUG1 177 aa4.93□□□□□ -1.62
LIMD1-201ENST00000273317 CYSTM1Q9H1C7 97 aa4.92□□□□□ -1.62
LIMD1-201ENST00000273317 MGAQ8IWI9 3026 aa4.92□□□□□ -1.62
LIMD1-201ENST00000273317 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.92□□□□□ -1.62
LIMD1-201ENST00000273317 VPS13AQ96RL7 3174 aa4.92□□□□□ -1.62
LIMD1-201ENST00000273317 KRTAP1-1Q07627 177 aa4.91□□□□□ -1.62
LIMD1-201ENST00000273317 TNP2Q05952 138 aa4.91□□□□□ -1.62
LIMD1-201ENST00000273317 LINC00472Q9H8W2 130 aa4.91□□□□□ -1.62
LIMD1-201ENST00000273317 EYSQ5T1H1 3165 aa4.9□□□□□ -1.63
LIMD1-201ENST00000273317 FRYQ5TBA9 3013 aa4.88□□□□□ -1.63
LIMD1-201ENST00000273317 ROMO1P60602 79 aa4.88□□□□□ -1.63
LIMD1-201ENST00000273317 NF1P21359 2839 aa4.87□□□□□ -1.63
LIMD1-201ENST00000273317 WDFY3Q8IZQ1 3526 aa4.87□□□□□ -1.63
LIMD1-201ENST00000273317 CELSR2Q9HCU4 2923 aa4.86□□□□□ -1.63
LIMD1-201ENST00000273317 KALRNO60229 2985 aa4.86□□□□□ -1.63
LIMD1-201ENST00000273317 CELSR3Q9NYQ7 3312 aa4.86□□□□□ -1.63
LIMD1-201ENST00000273317 NIPBLQ6KC79 2804 aaeCLIP4.85□□□□□ -1.63
LIMD1-201ENST00000273317 M0R2T5 61 aa4.85□□□□□ -1.63
LIMD1-201ENST00000273317 RPL37P61927 97 aaKnown RBP4.85□□□□□ -1.63
LIMD1-201ENST00000273317 Q6ZR54 194 aa4.84□□□□□ -1.63
LIMD1-201ENST00000273317 SPTBN5Q9NRC6 3674 aaKnown RBP4.84□□□□□ -1.63
LIMD1-201ENST00000273317 R4GN34 69 aa4.84□□□□□ -1.64
LIMD1-201ENST00000273317 H1FX-AS1Q4G0G2 97 aa4.83□□□□□ -1.64
LIMD1-201ENST00000273317 HIVEP1P15822 2718 aa4.83□□□□□ -1.64
LIMD1-201ENST00000273317 SEC61BP60468 96 aaKnown RBP4.83□□□□□ -1.64
LIMD1-201ENST00000273317 TACC2O95359 2948 aa4.82□□□□□ -1.64
LIMD1-201ENST00000273317 Q8NDZ9 215 aa4.81□□□□□ -1.64
LIMD1-201ENST00000273317 TENM3Q9P273 2699 aa4.8□□□□□ -1.64
LIMD1-201ENST00000273317 KRTAP26-1Q6PEX3 210 aa4.8□□□□□ -1.64
LIMD1-201ENST00000273317 TENM1Q9UKZ4 2725 aa4.8□□□□□ -1.64
LIMD1-201ENST00000273317 REV3LO60673 3130 aa4.79□□□□□ -1.64
LIMD1-201ENST00000273317 PLAC4Q8WY50 150 aa4.79□□□□□ -1.64
LIMD1-201ENST00000273317 ASH1LQ9NR48 2969 aaKnown RBP4.78□□□□□ -1.64
LIMD1-201ENST00000273317 KRTAP16-1A8MUX0 517 aa4.78□□□□□ -1.64
LIMD1-201ENST00000273317 SPATA8Q6RVD6 105 aa4.77□□□□□ -1.65
LIMD1-201ENST00000273317 OXTP01178 125 aa4.77□□□□□ -1.65
LIMD1-201ENST00000273317 CRYBG3Q68DQ2 2970 aa4.76□□□□□ -1.65
LIMD1-201ENST00000273317 M0QZ58 72 aa4.75□□□□□ -1.65
LIMD1-201ENST00000273317 FREM2Q5SZK8 3169 aa4.75□□□□□ -1.65
LIMD1-201ENST00000273317 MUC3AQ02505 3323 aa4.74□□□□□ -1.65
LIMD1-201ENST00000273317 PDZD2O15018 2839 aa4.74□□□□□ -1.65
LIMD1-201ENST00000273317 NDUFAF8A1L188 74 aa4.73□□□□□ -1.65
LIMD1-201ENST00000273317 PANO1I0J062 215 aa4.73□□□□□ -1.65
LIMD1-201ENST00000273317 KRTAP29-1A8MX34 341 aaPredicted RBP4.72□□□□□ -1.65
LIMD1-201ENST00000273317 DMXL2Q8TDJ6 3036 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms