RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 JMJD1CQ15652 2540 aa4.99□□□□□ -1.61
PTCD3-201ENST00000254630 TLN2Q9Y4G6 2542 aa4.98□□□□□ -1.61
PTCD3-201ENST00000254630 NOTCH2NLQ7Z3S9 236 aa4.98□□□□□ -1.61
PTCD3-201ENST00000254630 FASNP49327 2511 aaKnown RBP4.97□□□□□ -1.61
PTCD3-201ENST00000254630 H3BS24 57 aa4.97□□□□□ -1.61
PTCD3-201ENST00000254630 UTRNP46939 3433 aa4.97□□□□□ -1.61
PTCD3-201ENST00000254630 F8P00451 2351 aa4.96□□□□□ -1.62
PTCD3-201ENST00000254630 USP9XQ93008 2570 aaPredicted RBP4.95□□□□□ -1.62
PTCD3-201ENST00000254630 MYO9AB2RTY4 2548 aa4.95□□□□□ -1.62
PTCD3-201ENST00000254630 KRTAP7-1Q8IUC3 87 aa4.94□□□□□ -1.62
PTCD3-201ENST00000254630 POLQO75417 2590 aa4.94□□□□□ -1.62
PTCD3-201ENST00000254630 MYO18BQ8IUG5 2567 aa4.94□□□□□ -1.62
PTCD3-201ENST00000254630 A0A0A0MQY5 61 aa4.94□□□□□ -1.62
PTCD3-201ENST00000254630 CEP295Q9C0D2 2601 aa4.93□□□□□ -1.62
PTCD3-201ENST00000254630 KRTAP13-2Q52LG2 175 aa4.93□□□□□ -1.62
PTCD3-201ENST00000254630 ZFYVE26Q68DK2 2539 aa4.92□□□□□ -1.62
PTCD3-201ENST00000254630 SPTBN4Q9H254 2564 aa4.91□□□□□ -1.62
PTCD3-201ENST00000254630 KRTAP13-1Q8IUC0 172 aa4.91□□□□□ -1.62
PTCD3-201ENST00000254630 A8MUU9 505 aa4.9□□□□□ -1.62
PTCD3-201ENST00000254630 CHD8Q9HCK8 2581 aa4.9□□□□□ -1.63
PTCD3-201ENST00000254630 ACANP16112 2415 aa4.89□□□□□ -1.63
PTCD3-201ENST00000254630 KRTAP21-3Q3LHN1 58 aa4.89□□□□□ -1.63
PTCD3-201ENST00000254630 CHD7Q9P2D1 2997 aa4.87□□□□□ -1.63
PTCD3-201ENST00000254630 A8MU10 97 aa4.84□□□□□ -1.63
PTCD3-201ENST00000254630 C20orf166-AS1Q96NR2 134 aa4.84□□□□□ -1.63
PTCD3-201ENST00000254630 USP9YO00507 2555 aaPredicted RBP4.82□□□□□ -1.64
PTCD3-201ENST00000254630 MTORP42345 2549 aa4.81□□□□□ -1.64
PTCD3-201ENST00000254630 CHD9Q3L8U1 2897 aa4.8□□□□□ -1.64
PTCD3-201ENST00000254630 KRTAP25-1Q3LHN0 102 aa4.79□□□□□ -1.64
PTCD3-201ENST00000254630 HTTP42858 3142 aa4.78□□□□□ -1.64
PTCD3-201ENST00000254630 FLNAP21333 2647 aaKnown RBP4.78□□□□□ -1.64
PTCD3-201ENST00000254630 A6NN06 94 aa4.75□□□□□ -1.65
PTCD3-201ENST00000254630 SETD2Q9BYW2 2564 aaPredicted RBP4.74□□□□□ -1.65
PTCD3-201ENST00000254630 ITPR3Q14573 2671 aa4.74□□□□□ -1.65
PTCD3-201ENST00000254630 MKI67P46013 3256 aaKnown RBP4.71□□□□□ -1.65
PTCD3-201ENST00000254630 TNP1P09430 55 aa4.71□□□□□ -1.65
PTCD3-201ENST00000254630 HECTD1Q9ULT8 2610 aa4.71□□□□□ -1.66
PTCD3-201ENST00000254630 TRANK1O15050 2925 aa4.71□□□□□ -1.66
PTCD3-201ENST00000254630 XP32Q5T750 250 aa4.69□□□□□ -1.66
PTCD3-201ENST00000254630 CEP350Q5VT06 3117 aa4.68□□□□□ -1.66
PTCD3-201ENST00000254630 KRTAP1-4P0C5Y4 121 aa4.67□□□□□ -1.66
PTCD3-201ENST00000254630 A0A1B0GVY2 172 aa4.67□□□□□ -1.66
PTCD3-201ENST00000254630 C10orf95Q9H7T3 257 aa4.63□□□□□ -1.67
PTCD3-201ENST00000254630 PCNTO95613 3336 aa4.63□□□□□ -1.67
PTCD3-201ENST00000254630 AKAP13Q12802 2813 aa4.62□□□□□ -1.67
PTCD3-201ENST00000254630 TPRXLQ17RH7 258 aa4.61□□□□□ -1.67
PTCD3-201ENST00000254630 KRTAP16-1A8MUX0 517 aa4.6□□□□□ -1.67
PTCD3-201ENST00000254630 UNC80Q8N2C7 3258 aa4.6□□□□□ -1.67
PTCD3-201ENST00000254630 HELZ2Q9BYK8 2649 aaKnown RBP4.59□□□□□ -1.67
PTCD3-201ENST00000254630 KRTAP10-8P60410 259 aa4.59□□□□□ -1.67
PTCD3-201ENST00000254630 BRCA2P51587 3418 aa4.58□□□□□ -1.68
PTCD3-201ENST00000254630 KMT2BQ9UMN6 2715 aaPredicted RBP4.57□□□□□ -1.68
PTCD3-201ENST00000254630 EPG5Q9HCE0 2579 aa4.56□□□□□ -1.68
PTCD3-201ENST00000254630 ATRQ13535 2644 aa4.54□□□□□ -1.68
PTCD3-201ENST00000254630 PP632Q6XCG6 107 aa4.54□□□□□ -1.68
PTCD3-201ENST00000254630 NDUFAF8A1L188 74 aa4.54□□□□□ -1.68
PTCD3-201ENST00000254630 KRTAP10-10P60014 251 aa4.53□□□□□ -1.68
PTCD3-201ENST00000254630 CFAP46Q8IYW2 2715 aa4.53□□□□□ -1.68
PTCD3-201ENST00000254630 CDH23Q9H251 3354 aa4.53□□□□□ -1.68
PTCD3-201ENST00000254630 KRTAP13-3Q3SY46 172 aa4.52□□□□□ -1.69
PTCD3-201ENST00000254630 USP24Q9UPU5 2620 aa4.52□□□□□ -1.69
PTCD3-201ENST00000254630 MGAQ8IWI9 3026 aa4.51□□□□□ -1.69
PTCD3-201ENST00000254630 SPTBN5Q9NRC6 3674 aaKnown RBP4.51□□□□□ -1.69
PTCD3-201ENST00000254630 H0YAA0 97 aa4.5□□□□□ -1.69
PTCD3-201ENST00000254630 RANBP2P49792 3224 aaKnown RBP4.5□□□□□ -1.69
PTCD3-201ENST00000254630 PRRC2CQ9Y520 2896 aaKnown RBP4.5□□□□□ -1.69
PTCD3-201ENST00000254630 PRO2289Q9P1D8 64 aa4.49□□□□□ -1.69
PTCD3-201ENST00000254630 DNAH14Q0VDD8 3507 aa4.48□□□□□ -1.69
PTCD3-201ENST00000254630 LAMA3Q16787 3333 aa4.48□□□□□ -1.69
PTCD3-201ENST00000254630 TRIOO75962 3097 aa4.48□□□□□ -1.69
PTCD3-201ENST00000254630 MGAM2Q2M2H8 2515 aa4.47□□□□□ -1.69
PTCD3-201ENST00000254630 MAST4O15021 2626 aa4.45□□□□□ -1.7
PTCD3-201ENST00000254630 COL6A3P12111 3177 aa4.44□□□□□ -1.7
PTCD3-201ENST00000254630 XIRP2A4UGR9 3374 aa4.44□□□□□ -1.7
PTCD3-201ENST00000254630 CFAP54Q96N23 3096 aa4.44□□□□□ -1.7
PTCD3-201ENST00000254630 ZNF292O60281 2723 aa4.43□□□□□ -1.7
PTCD3-201ENST00000254630 CHD6Q8TD26 2715 aa4.42□□□□□ -1.7
PTCD3-201ENST00000254630 TEP1Q99973 2627 aaKnown RBP4.41□□□□□ -1.7
PTCD3-201ENST00000254630 SZT2Q5T011 3432 aa4.4□□□□□ -1.7
PTCD3-201ENST00000254630 IGSF10Q6WRI0 2623 aa4.4□□□□□ -1.7
PTCD3-201ENST00000254630 P0C880 135 aa4.39□□□□□ -1.71
PTCD3-201ENST00000254630 ITPR2Q14571 2701 aa4.38□□□□□ -1.71
PTCD3-201ENST00000254630 TNRC18O15417 2968 aaPredicted RBP4.37□□□□□ -1.71
PTCD3-201ENST00000254630 TEX15Q9BXT5 2789 aa4.36□□□□□ -1.71
PTCD3-201ENST00000254630 CELSR3Q9NYQ7 3312 aa4.36□□□□□ -1.71
PTCD3-201ENST00000254630 PRUNE2Q8WUY3 3088 aa4.35□□□□□ -1.71
PTCD3-201ENST00000254630 GCN1Q92616 2671 aaKnown RBP4.35□□□□□ -1.71
PTCD3-201ENST00000254630 SETXQ7Z333 2677 aaKnown RBP4.34□□□□□ -1.72
PTCD3-201ENST00000254630 FLNBO75369 2602 aaKnown RBP4.33□□□□□ -1.72
PTCD3-201ENST00000254630 BAHCC1Q9P281 2608 aa4.33□□□□□ -1.72
PTCD3-201ENST00000254630 A0A0C4DFX4 3053 aa4.33□□□□□ -1.72
PTCD3-201ENST00000254630 LRBAP50851 2863 aa4.32□□□□□ -1.72
PTCD3-201ENST00000254630 WDFY4Q6ZS81 3184 aa4.31□□□□□ -1.72
PTCD3-201ENST00000254630 USP34Q70CQ2 3546 aa4.31□□□□□ -1.72
PTCD3-201ENST00000254630 KRTAP12-2P59991 146 aa4.29□□□□□ -1.72
PTCD3-201ENST00000254630 LAMA2P24043 3122 aaKnown RBP4.29□□□□□ -1.72
PTCD3-201ENST00000254630 FRYQ5TBA9 3013 aa4.29□□□□□ -1.72
PTCD3-201ENST00000254630 CENPEQ02224 2701 aa4.28□□□□□ -1.72
PTCD3-201ENST00000254630 NBEAL1Q6ZS30 2694 aa4.28□□□□□ -1.72
PTCD3-201ENST00000254630 UNC79Q9P2D8 2635 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms