RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 SETXQ7Z333 2677 aaKnown RBP11.52□□□□□ -0.57
SMARCC1-201ENST00000254480 CD164Q04900 197 aa11.5□□□□□ -0.57
SMARCC1-201ENST00000254480 CELSR3Q9NYQ7 3312 aa11.5□□□□□ -0.57
SMARCC1-201ENST00000254480 Q8N9P0 234 aaPredicted RBP11.5□□□□□ -0.57
SMARCC1-201ENST00000254480 KTN1-AS1Q86SY8 53 aa11.49□□□□□ -0.57
SMARCC1-201ENST00000254480 KRTAP1-5Q9BYS1 174 aa11.47□□□□□ -0.57
SMARCC1-201ENST00000254480 CAMK2N1Q7Z7J9 78 aa11.47□□□□□ -0.57
SMARCC1-201ENST00000254480 MAP1AP78559 2803 aaPredicted RBP11.46□□□□□ -0.57
SMARCC1-201ENST00000254480 CDH23Q9H251 3354 aa11.45□□□□□ -0.58
SMARCC1-201ENST00000254480 PLAC8Q9NZF1 115 aa11.44□□□□□ -0.58
SMARCC1-201ENST00000254480 MMP24-AS1A0A0U1RRL7 71 aa11.43□□□□□ -0.58
SMARCC1-201ENST00000254480 A0A1B0GU33 70 aa11.42□□□□□ -0.58
SMARCC1-201ENST00000254480 NBEAL1Q6ZS30 2694 aa11.41□□□□□ -0.58
SMARCC1-201ENST00000254480 LCA10Q71F78 164 aa11.41□□□□□ -0.58
SMARCC1-201ENST00000254480 FAM229BQ4G0N7 80 aa11.4□□□□□ -0.58
SMARCC1-201ENST00000254480 VPS13AQ96RL7 3174 aa11.39□□□□□ -0.59
SMARCC1-201ENST00000254480 WIPF1O43516 503 aa11.38□□□□□ -0.59
SMARCC1-201ENST00000254480 ZCCHC13Q8WW36 166 aaKnown RBP11.38□□□□□ -0.59
SMARCC1-201ENST00000254480 GCN1Q92616 2671 aaKnown RBP11.36□□□□□ -0.59
SMARCC1-201ENST00000254480 CYSTM1Q9H1C7 97 aa11.35□□□□□ -0.59
SMARCC1-201ENST00000254480 DSPP15924 2871 aaKnown RBP11.35□□□□□ -0.59
SMARCC1-201ENST00000254480 FLG2Q5D862 2391 aaPredicted RBP11.34□□□□□ -0.59
SMARCC1-201ENST00000254480 KRTAP10-2P60368 255 aa11.33□□□□□ -0.6
SMARCC1-201ENST00000254480 SPRR1AP35321 89 aa11.33□□□□□ -0.6
SMARCC1-201ENST00000254480 COL6A5A8TX70 2615 aa11.32□□□□□ -0.6
SMARCC1-201ENST00000254480 TRANK1O15050 2925 aa11.32□□□□□ -0.6
SMARCC1-201ENST00000254480 Q1T7F1 81 aa11.32□□□□□ -0.6
SMARCC1-201ENST00000254480 S4R3F8 94 aa11.31□□□□□ -0.6
SMARCC1-201ENST00000254480 UNC79Q9P2D8 2635 aa11.31□□□□□ -0.6
SMARCC1-201ENST00000254480 KRTAP10-1P60331 282 aa11.3□□□□□ -0.6
SMARCC1-201ENST00000254480 Q5W150 140 aa11.3□□□□□ -0.6
SMARCC1-201ENST00000254480 Q5VSD8 79 aa11.29□□□□□ -0.6
SMARCC1-201ENST00000254480 FRYQ5TBA9 3013 aa11.29□□□□□ -0.6
SMARCC1-201ENST00000254480 NOTCH1P46531 2555 aa11.28□□□□□ -0.6
SMARCC1-201ENST00000254480 NBEAL2Q6ZNJ1 2754 aa11.28□□□□□ -0.6
SMARCC1-201ENST00000254480 SPINK7P58062 85 aa11.27□□□□□ -0.61
SMARCC1-201ENST00000254480 ZNF292O60281 2723 aa11.25□□□□□ -0.61
SMARCC1-201ENST00000254480 CSAG1Q6PB30 78 aa11.25□□□□□ -0.61
SMARCC1-201ENST00000254480 LINC00472Q9H8W2 130 aa11.25□□□□□ -0.61
SMARCC1-201ENST00000254480 LUZP6Q538Z0 58 aa11.24□□□□□ -0.61
SMARCC1-201ENST00000254480 PRAC1Q96KF2 57 aa11.22□□□□□ -0.61
SMARCC1-201ENST00000254480 PANO1I0J062 215 aa11.22□□□□□ -0.61
SMARCC1-201ENST00000254480 KRTAP26-1Q6PEX3 210 aa11.22□□□□□ -0.61
SMARCC1-201ENST00000254480 Q75L30 129 aa11.18□□□□□ -0.62
SMARCC1-201ENST00000254480 DNAH14Q0VDD8 3507 aa11.18□□□□□ -0.62
SMARCC1-201ENST00000254480 R4GN34 69 aa11.14□□□□□ -0.63
SMARCC1-201ENST00000254480 SPRR1BP22528 89 aa11.13□□□□□ -0.63
SMARCC1-201ENST00000254480 LINC01558Q9Y6Z2 57 aa11.13□□□□□ -0.63
SMARCC1-201ENST00000254480 FP248Q71RG6 208 aaPredicted RBP11.12□□□□□ -0.63
SMARCC1-201ENST00000254480 VCANP13611 3396 aa11.12□□□□□ -0.63
SMARCC1-201ENST00000254480 SZT2Q5T011 3432 aa11.11□□□□□ -0.63
SMARCC1-201ENST00000254480 UBR5O95071 2799 aaPredicted RBP11.11□□□□□ -0.63
SMARCC1-201ENST00000254480 Q5XG85 94 aa11.11□□□□□ -0.63
SMARCC1-201ENST00000254480 LCE6AA0A183 80 aa11.1□□□□□ -0.63
SMARCC1-201ENST00000254480 LINC00483Q53H64 154 aa11.1□□□□□ -0.63
SMARCC1-201ENST00000254480 DMAC1Q96GE9 116 aa11.09□□□□□ -0.63
SMARCC1-201ENST00000254480 Q5VV11 94 aa11.06□□□□□ -0.64
SMARCC1-201ENST00000254480 KALRNO60229 2985 aa11.05□□□□□ -0.64
SMARCC1-201ENST00000254480 DMXL2Q8TDJ6 3036 aa11.04□□□□□ -0.64
SMARCC1-201ENST00000254480 BAHCC1Q9P281 2608 aa11.04□□□□□ -0.64
SMARCC1-201ENST00000254480 IGSF10Q6WRI0 2623 aa11.04□□□□□ -0.64
SMARCC1-201ENST00000254480 SEC61BP60468 96 aaKnown RBP11.03□□□□□ -0.64
SMARCC1-201ENST00000254480 REV3LO60673 3130 aa11.03□□□□□ -0.64
SMARCC1-201ENST00000254480 A0A087X002 238 aa11.02□□□□□ -0.65
SMARCC1-201ENST00000254480 LAMA1P25391 3075 aa11.02□□□□□ -0.65
SMARCC1-201ENST00000254480 TACC2O95359 2948 aa11.02□□□□□ -0.65
SMARCC1-201ENST00000254480 DMBT1Q9UGM3 2413 aaPredicted RBP11.01□□□□□ -0.65
SMARCC1-201ENST00000254480 STAB2Q8WWQ8 2551 aa10.99□□□□□ -0.65
SMARCC1-201ENST00000254480 COL6A3P12111 3177 aa10.98□□□□□ -0.65
SMARCC1-201ENST00000254480 M0QZ58 72 aa10.97□□□□□ -0.65
SMARCC1-201ENST00000254480 CFAP47Q6ZTR5 3102 aa10.94□□□□□ -0.66
SMARCC1-201ENST00000254480 SPATA8Q6RVD6 105 aa10.94□□□□□ -0.66
SMARCC1-201ENST00000254480 NOTCH2NLQ7Z3S9 236 aa10.93□□□□□ -0.66
SMARCC1-201ENST00000254480 KRTAP11-1Q8IUC1 163 aa10.92□□□□□ -0.66
SMARCC1-201ENST00000254480 ATMQ13315 3056 aa10.91□□□□□ -0.66
SMARCC1-201ENST00000254480 BOD1L1Q8NFC6 3051 aa10.91□□□□□ -0.66
SMARCC1-201ENST00000254480 OXTP01178 125 aa10.91□□□□□ -0.66
SMARCC1-201ENST00000254480 KRTAP4-16G5E9R7 235 aaPredicted RBP10.91□□□□□ -0.66
SMARCC1-201ENST00000254480 Q6ZR54 194 aa10.91□□□□□ -0.66
SMARCC1-201ENST00000254480 ADM2Q7Z4H4 148 aa10.88□□□□□ -0.67
SMARCC1-201ENST00000254480 ITPR2Q14571 2701 aa10.87□□□□□ -0.67
SMARCC1-201ENST00000254480 ASH1LQ9NR48 2969 aaKnown RBP10.86□□□□□ -0.67
SMARCC1-201ENST00000254480 FRYLO94915 3013 aa10.86□□□□□ -0.67
SMARCC1-201ENST00000254480 RPL37P61927 97 aaKnown RBP10.86□□□□□ -0.67
SMARCC1-201ENST00000254480 COL12A1Q99715 3063 aa10.86□□□□□ -0.67
SMARCC1-201ENST00000254480 CRYBG3Q68DQ2 2970 aa10.85□□□□□ -0.67
SMARCC1-201ENST00000254480 NSD1Q96L73 2696 aaPredicted RBP10.85□□□□□ -0.67
SMARCC1-201ENST00000254480 ITPR1Q14643 2758 aa10.85□□□□□ -0.67
SMARCC1-201ENST00000254480 H1FX-AS1Q4G0G2 97 aa10.84□□□□□ -0.67
SMARCC1-201ENST00000254480 LRBAP50851 2863 aa10.82□□□□□ -0.68
SMARCC1-201ENST00000254480 NBEAQ8NFP9 2946 aa10.78□□□□□ -0.68
SMARCC1-201ENST00000254480 ADGRG4Q8IZF6 3080 aa10.77□□□□□ -0.68
SMARCC1-201ENST00000254480 ROMO1P60602 79 aa10.77□□□□□ -0.69
SMARCC1-201ENST00000254480 KRTAP29-1A8MX34 341 aaPredicted RBP10.76□□□□□ -0.69
SMARCC1-201ENST00000254480 UTP20O75691 2785 aaKnown RBP10.73□□□□□ -0.69
SMARCC1-201ENST00000254480 SPEGQ15772 3267 aa10.73□□□□□ -0.69
SMARCC1-201ENST00000254480 HIVEP1P15822 2718 aa10.71□□□□□ -0.69
SMARCC1-201ENST00000254480 KRTAP7-1Q8IUC3 87 aa10.7□□□□□ -0.7
SMARCC1-201ENST00000254480 PLAC4Q8WY50 150 aa10.69□□□□□ -0.7
SMARCC1-201ENST00000254480 Q6ZRN7 208 aaPredicted RBP10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms