RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 NOTCH1P46531 2555 aa8.31□□□□□ -1.08
SF3A1-201ENST00000215793 CSAG1Q6PB30 78 aa8.29□□□□□ -1.08
SF3A1-201ENST00000215793 COL6A5A8TX70 2615 aa8.28□□□□□ -1.08
SF3A1-201ENST00000215793 DMAC1Q96GE9 116 aa8.26□□□□□ -1.09
SF3A1-201ENST00000215793 UNC79Q9P2D8 2635 aa8.26□□□□□ -1.09
SF3A1-201ENST00000215793 Q5W150 140 aa8.25□□□□□ -1.09
SF3A1-201ENST00000215793 CHD7Q9P2D1 2997 aa8.22□□□□□ -1.09
SF3A1-201ENST00000215793 LINC00483Q53H64 154 aa8.21□□□□□ -1.09
SF3A1-201ENST00000215793 FP248Q71RG6 208 aaPredicted RBP8.21□□□□□ -1.1
SF3A1-201ENST00000215793 M0R2T5 61 aa8.2□□□□□ -1.1
SF3A1-201ENST00000215793 SPINK7P58062 85 aa8.2□□□□□ -1.1
SF3A1-201ENST00000215793 KRTAP26-1Q6PEX3 210 aa8.2□□□□□ -1.1
SF3A1-201ENST00000215793 S4R3F8 94 aa8.2□□□□□ -1.1
SF3A1-201ENST00000215793 GCN1Q92616 2671 aaKnown RBP8.2□□□□□ -1.1
SF3A1-201ENST00000215793 Q5XG85 94 aa8.2□□□□□ -1.1
SF3A1-201ENST00000215793 KRTAP1-5Q9BYS1 174 aa8.2□□□□□ -1.1
SF3A1-201ENST00000215793 CYSTM1Q9H1C7 97 aa8.18□□□□□ -1.1
SF3A1-201ENST00000215793 C5orf42Q9H799 3197 aa8.18□□□□□ -1.1
SF3A1-201ENST00000215793 Q5VV11 94 aa8.16□□□□□ -1.1
SF3A1-201ENST00000215793 ZNF292O60281 2723 aa8.15□□□□□ -1.1
SF3A1-201ENST00000215793 DMBT1Q9UGM3 2413 aaPredicted RBP8.14□□□□□ -1.11
SF3A1-201ENST00000215793 UTRNP46939 3433 aa8.14□□□□□ -1.11
SF3A1-201ENST00000215793 PCNTO95613 3336 aa8.12□□□□□ -1.11
SF3A1-201ENST00000215793 SEC61BP60468 96 aaKnown RBP8.12□□□□□ -1.11
SF3A1-201ENST00000215793 R4GN34 69 aa8.12□□□□□ -1.11
SF3A1-201ENST00000215793 STAB2Q8WWQ8 2551 aa8.12□□□□□ -1.11
SF3A1-201ENST00000215793 MGAQ8IWI9 3026 aa8.09□□□□□ -1.11
SF3A1-201ENST00000215793 CHD9Q3L8U1 2897 aa8.08□□□□□ -1.12
SF3A1-201ENST00000215793 PRAC1Q96KF2 57 aa8.07□□□□□ -1.12
SF3A1-201ENST00000215793 KRTAP10-1P60331 282 aa8.07□□□□□ -1.12
SF3A1-201ENST00000215793 KRTAP4-16G5E9R7 235 aaPredicted RBP8.06□□□□□ -1.12
SF3A1-201ENST00000215793 RPL37P61927 97 aaKnown RBP8.05□□□□□ -1.12
SF3A1-201ENST00000215793 CFAP54Q96N23 3096 aa8.05□□□□□ -1.12
SF3A1-201ENST00000215793 UBR5O95071 2799 aaPredicted RBP8.05□□□□□ -1.12
SF3A1-201ENST00000215793 Q5VSD8 79 aa8.05□□□□□ -1.12
SF3A1-201ENST00000215793 LCE6AA0A183 80 aa8.04□□□□□ -1.12
SF3A1-201ENST00000215793 Q6ZR54 194 aa8.03□□□□□ -1.12
SF3A1-201ENST00000215793 KRTAP10-2P60368 255 aa8.03□□□□□ -1.12
SF3A1-201ENST00000215793 NBEAL2Q6ZNJ1 2754 aa8.01□□□□□ -1.13
SF3A1-201ENST00000215793 MAP1AP78559 2803 aaPredicted RBP8□□□□□ -1.13
SF3A1-201ENST00000215793 KRTAP29-1A8MX34 341 aaPredicted RBP8□□□□□ -1.13
SF3A1-201ENST00000215793 BAHCC1Q9P281 2608 aa7.98□□□□□ -1.13
SF3A1-201ENST00000215793 RANBP2P49792 3224 aaKnown RBP7.97□□□□□ -1.13
SF3A1-201ENST00000215793 NSD1Q96L73 2696 aaPredicted RBP7.97□□□□□ -1.13
SF3A1-201ENST00000215793 ROMO1P60602 79 aa7.96□□□□□ -1.14
SF3A1-201ENST00000215793 H1FX-AS1Q4G0G2 97 aa7.96□□□□□ -1.14
SF3A1-201ENST00000215793 PANO1I0J062 215 aa7.96□□□□□ -1.14
SF3A1-201ENST00000215793 OXTP01178 125 aa7.96□□□□□ -1.14
SF3A1-201ENST00000215793 A0A0C4DFX4 3053 aa7.95□□□□□ -1.14
SF3A1-201ENST00000215793 A0A0A0MQY5 61 aa7.95□□□□□ -1.14
SF3A1-201ENST00000215793 M0QZ58 72 aa7.93□□□□□ -1.14
SF3A1-201ENST00000215793 IGSF10Q6WRI0 2623 aa7.92□□□□□ -1.14
SF3A1-201ENST00000215793 DSPP15924 2871 aaKnown RBP7.92□□□□□ -1.14
SF3A1-201ENST00000215793 TRANK1O15050 2925 aa7.9□□□□□ -1.14
SF3A1-201ENST00000215793 A0A087X002 238 aa7.89□□□□□ -1.15
SF3A1-201ENST00000215793 ASB16-AS1Q495Z4 193 aa7.89□□□□□ -1.15
SF3A1-201ENST00000215793 WDFY4Q6ZS81 3184 aa7.87□□□□□ -1.15
SF3A1-201ENST00000215793 HTTP42858 3142 aa7.83□□□□□ -1.16
SF3A1-201ENST00000215793 RPS29P62273 56 aaKnown RBP7.83□□□□□ -1.16
SF3A1-201ENST00000215793 H3BS24 57 aa7.82□□□□□ -1.16
SF3A1-201ENST00000215793 ADM2Q7Z4H4 148 aa7.82□□□□□ -1.16
SF3A1-201ENST00000215793 NOTCH2NLQ7Z3S9 236 aa7.81□□□□□ -1.16
SF3A1-201ENST00000215793 SPATA8Q6RVD6 105 aa7.8□□□□□ -1.16
SF3A1-201ENST00000215793 ITPR2Q14571 2701 aa7.8□□□□□ -1.16
SF3A1-201ENST00000215793 ITPR1Q14643 2758 aa7.79□□□□□ -1.16
SF3A1-201ENST00000215793 FRYQ5TBA9 3013 aa7.78□□□□□ -1.16
SF3A1-201ENST00000215793 PLAC4Q8WY50 150 aa7.77□□□□□ -1.16
SF3A1-201ENST00000215793 Q6ZRN7 208 aaPredicted RBP7.77□□□□□ -1.17
SF3A1-201ENST00000215793 LAMA2P24043 3122 aaKnown RBP7.76□□□□□ -1.17
SF3A1-201ENST00000215793 KRTAP11-1Q8IUC1 163 aa7.75□□□□□ -1.17
SF3A1-201ENST00000215793 LAMA3Q16787 3333 aa7.73□□□□□ -1.17
SF3A1-201ENST00000215793 KRTAP7-1Q8IUC3 87 aa7.71□□□□□ -1.17
SF3A1-201ENST00000215793 PRUNE2Q8WUY3 3088 aa7.7□□□□□ -1.18
SF3A1-201ENST00000215793 TRIOO75962 3097 aa7.7□□□□□ -1.18
SF3A1-201ENST00000215793 KRTAP13-1Q8IUC0 172 aa7.68□□□□□ -1.18
SF3A1-201ENST00000215793 FLNCQ14315 2725 aa7.66□□□□□ -1.18
SF3A1-201ENST00000215793 KRTAP13-2Q52LG2 175 aa7.65□□□□□ -1.18
SF3A1-201ENST00000215793 HIVEP1P15822 2718 aa7.65□□□□□ -1.19
SF3A1-201ENST00000215793 TACC2O95359 2948 aa7.63□□□□□ -1.19
SF3A1-201ENST00000215793 A8MUU9 505 aa7.62□□□□□ -1.19
SF3A1-201ENST00000215793 VPS13AQ96RL7 3174 aa7.61□□□□□ -1.19
SF3A1-201ENST00000215793 MKI67P46013 3256 aaKnown RBP7.61□□□□□ -1.19
SF3A1-201ENST00000215793 BRCA2P51587 3418 aa7.61□□□□□ -1.19
SF3A1-201ENST00000215793 A6NN06 94 aa7.6□□□□□ -1.19
SF3A1-201ENST00000215793 UTP20O75691 2785 aaKnown RBP7.59□□□□□ -1.19
SF3A1-201ENST00000215793 A8MU10 97 aa7.58□□□□□ -1.2
SF3A1-201ENST00000215793 KRTAP25-1Q3LHN0 102 aa7.58□□□□□ -1.2
SF3A1-201ENST00000215793 KMT2BQ9UMN6 2715 aaPredicted RBP7.58□□□□□ -1.2
SF3A1-201ENST00000215793 TENM4Q6N022 2769 aa7.57□□□□□ -1.2
SF3A1-201ENST00000215793 NIPBLQ6KC79 2804 aaeCLIP7.57□□□□□ -1.2
SF3A1-201ENST00000215793 APCP25054 2843 aa7.56□□□□□ -1.2
SF3A1-201ENST00000215793 DMXL2Q8TDJ6 3036 aa7.55□□□□□ -1.2
SF3A1-201ENST00000215793 REV3LO60673 3130 aa7.54□□□□□ -1.2
SF3A1-201ENST00000215793 KALRNO60229 2985 aa7.52□□□□□ -1.21
SF3A1-201ENST00000215793 ASH1LQ9NR48 2969 aaKnown RBP7.51□□□□□ -1.21
SF3A1-201ENST00000215793 FREM2Q5SZK8 3169 aa7.5□□□□□ -1.21
SF3A1-201ENST00000215793 XIRP2A4UGR9 3374 aa7.5□□□□□ -1.21
SF3A1-201ENST00000215793 C20orf166-AS1Q96NR2 134 aa7.5□□□□□ -1.21
SF3A1-201ENST00000215793 ATMQ13315 3056 aa7.49□□□□□ -1.21
SF3A1-201ENST00000215793 COL12A1Q99715 3063 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms