RNA–Protein interactions for RNA: ENST00000598553.1

VRK3-214, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 595 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-214ENST00000598553 LINC00167Q96N53 147 aa6.34□□□□□ -1.39
VRK3-214ENST00000598553 A0A087X002 238 aa6.33□□□□□ -1.4
VRK3-214ENST00000598553 IGLV5-39A0A0G2JS06 123 aa6.33□□□□□ -1.4
VRK3-214ENST00000598553 RPL24P83731 157 aaKnown RBP6.33□□□□□ -1.4
VRK3-214ENST00000598553 NAA38Q9BRA0 125 aaKnown RBP6.33□□□□□ -1.4
VRK3-214ENST00000598553 RNF213Q63HN8 5207 aa6.32□□□□□ -1.4
VRK3-214ENST00000598553 IGLV5-37A0A075B6J1 123 aa6.32□□□□□ -1.4
VRK3-214ENST00000598553 RPL13AP40429 203 aaKnown RBP6.32□□□□□ -1.4
VRK3-214ENST00000598553 TSPEAR-AS2P59090 65 aa6.32□□□□□ -1.4
VRK3-214ENST00000598553 ANAPC11Q9NYG5 84 aa6.32□□□□□ -1.4
VRK3-214ENST00000598553 J3QR89 54 aa6.31□□□□□ -1.4
VRK3-214ENST00000598553 BCE1O60756 84 aa6.31□□□□□ -1.4
VRK3-214ENST00000598553 PFN2P35080 140 aa6.31□□□□□ -1.4
VRK3-214ENST00000598553 KRTAP13-1Q8IUC0 172 aa6.31□□□□□ -1.4
VRK3-214ENST00000598553 ZNF625Q96I27 306 aaPredicted RBP6.31□□□□□ -1.4
VRK3-214ENST00000598553 TRBV20-1A0A075B6N2 111 aa6.3□□□□□ -1.4
VRK3-214ENST00000598553 A0A0B4J2C4 111 aa6.3□□□□□ -1.4
VRK3-214ENST00000598553 TIMM17BO60830 172 aa6.3□□□□□ -1.4
VRK3-214ENST00000598553 RPL28P46779 137 aaKnown RBP6.3□□□□□ -1.4
VRK3-214ENST00000598553 NKAPP1Q8N9T2 125 aa6.3□□□□□ -1.4
VRK3-214ENST00000598553 VPS25Q9BRG1 176 aa6.3□□□□□ -1.4
VRK3-214ENST00000598553 PRO1854Q9UHT4 67 aa6.3□□□□□ -1.4
VRK3-214ENST00000598553 A0A0J9YXY3 114 aa6.29□□□□□ -1.4
VRK3-214ENST00000598553 VPREB1P12018 145 aa6.29□□□□□ -1.4
VRK3-214ENST00000598553 SND1-IT1Q9HBX3 110 aa6.29□□□□□ -1.4
VRK3-214ENST00000598553 IGKV2-28A0A075B6P5 120 aa6.28□□□□□ -1.4
VRK3-214ENST00000598553 TSPAN13O95857 204 aa6.28□□□□□ -1.4
VRK3-214ENST00000598553 IGKV2D-28P01615 120 aa6.28□□□□□ -1.4
VRK3-214ENST00000598553 CFC1BP0CG36 223 aa6.28□□□□□ -1.4
VRK3-214ENST00000598553 CFC1P0CG37 223 aa6.28□□□□□ -1.4
VRK3-214ENST00000598553 IFITM1P13164 125 aa6.28□□□□□ -1.4
VRK3-214ENST00000598553 PRLHP81277 87 aa6.28□□□□□ -1.4
VRK3-214ENST00000598553 COPS9Q8WXC6 57 aa6.28□□□□□ -1.4
VRK3-214ENST00000598553 SPANXDQ9BXN6 97 aa6.28□□□□□ -1.4
VRK3-214ENST00000598553 SPANXCQ9NY87 97 aa6.28□□□□□ -1.4
VRK3-214ENST00000598553 NDUFA12Q9UI09 145 aa6.28□□□□□ -1.4
VRK3-214ENST00000598553 ERG28Q9UKR5 140 aa6.28□□□□□ -1.4
VRK3-214ENST00000598553 KRTAP13-2Q52LG2 175 aa6.27□□□□□ -1.41
VRK3-214ENST00000598553 LOC107984156A0A0G2JMH3 177 aa6.26□□□□□ -1.41
VRK3-214ENST00000598553 A4D1N5 150 aa6.26□□□□□ -1.41
VRK3-214ENST00000598553 H3BMG7 143 aa6.26□□□□□ -1.41
VRK3-214ENST00000598553 COX17Q14061 63 aa6.26□□□□□ -1.41
VRK3-214ENST00000598553 SFTA2Q6UW10 78 aa6.26□□□□□ -1.41
VRK3-214ENST00000598553 MUSTN1Q8IVN3 82 aa6.26□□□□□ -1.41
VRK3-214ENST00000598553 ARL17AQ8IVW1 177 aa6.26□□□□□ -1.41
VRK3-214ENST00000598553 A0A0U1RRA0 63 aa6.25□□□□□ -1.41
VRK3-214ENST00000598553 UBE2AP49459 152 aa6.25□□□□□ -1.41
VRK3-214ENST00000598553 PSMB2P49721 201 aa6.25□□□□□ -1.41
VRK3-214ENST00000598553 M0R378 163 aa6.24□□□□□ -1.41
VRK3-214ENST00000598553 SCGB1C2P0DMR2 95 aa6.24□□□□□ -1.41
VRK3-214ENST00000598553 HERV-K104P63124 156 aa6.24□□□□□ -1.41
VRK3-214ENST00000598553 PPDPFQ9H3Y8 114 aa6.24□□□□□ -1.41
VRK3-214ENST00000598553 PRO0461Q9UI25 63 aa6.24□□□□□ -1.41
VRK3-214ENST00000598553 CRYGAP11844 174 aa6.23□□□□□ -1.41
VRK3-214ENST00000598553 PRR4Q16378 134 aa6.23□□□□□ -1.41
VRK3-214ENST00000598553 LITAFQ99732 161 aa6.23□□□□□ -1.41
VRK3-214ENST00000598553 TMEM126AQ9H061 195 aa6.23□□□□□ -1.41
VRK3-214ENST00000598553 COX6CP09669 75 aa6.22□□□□□ -1.41
VRK3-214ENST00000598553 PCP4P48539 62 aa6.22□□□□□ -1.41
VRK3-214ENST00000598553 TYMSOSQ8TAI1 123 aa6.22□□□□□ -1.41
VRK3-214ENST00000598553 ATXN8Q156A1 80 aa6.21□□□□□ -1.42
VRK3-214ENST00000598553 Q1RN00 199 aa6.21□□□□□ -1.42
VRK3-214ENST00000598553 FAM229BQ4G0N7 80 aa6.21□□□□□ -1.42
VRK3-214ENST00000598553 FAM19A1Q7Z5A9 133 aa6.21□□□□□ -1.42
VRK3-214ENST00000598553 RETNLBQ9BQ08 111 aa6.21□□□□□ -1.42
VRK3-214ENST00000598553 TCL1BO95988 128 aa6.2□□□□□ -1.42
VRK3-214ENST00000598553 LINC00158P58513 81 aa6.2□□□□□ -1.42
VRK3-214ENST00000598553 ETDBQ3ZM63 59 aa6.2□□□□□ -1.42
VRK3-214ENST00000598553 C3orf22Q8N5N4 141 aa6.2□□□□□ -1.42
VRK3-214ENST00000598553 PPDPFLQ8WWR9 84 aa6.19□□□□□ -1.42
VRK3-214ENST00000598553 NCR3O14931 201 aa6.18□□□□□ -1.42
VRK3-214ENST00000598553 ADAMTSL4-AS1Q5T5F5 129 aa6.18□□□□□ -1.42
VRK3-214ENST00000598553 TEN1Q86WV5 123 aa6.18□□□□□ -1.42
VRK3-214ENST00000598553 MIR7-3HGQ8N6C7 128 aa6.18□□□□□ -1.42
VRK3-214ENST00000598553 EIF4EBP3O60516 100 aaPredicted RBP6.17□□□□□ -1.42
VRK3-214ENST00000598553 SMCPP49901 116 aaPredicted RBP6.17□□□□□ -1.42
VRK3-214ENST00000598553 MEIG1Q5JSS6 88 aa6.17□□□□□ -1.42
VRK3-214ENST00000598553 DAND5Q8N907 189 aa6.17□□□□□ -1.42
VRK3-214ENST00000598553 LINC00308Q8TCZ7 52 aa6.17□□□□□ -1.42
VRK3-214ENST00000598553 H7C2G1 150 aa6.16□□□□□ -1.42
VRK3-214ENST00000598553 SLC25A20O43772 301 aa6.16□□□□□ -1.42
VRK3-214ENST00000598553 SCGB1A1P11684 91 aa6.16□□□□□ -1.42
VRK3-214ENST00000598553 LINC00304Q8N9R0 145 aa6.16□□□□□ -1.42
VRK3-214ENST00000598553 SIGMAR1Q99720 223 aa6.16□□□□□ -1.42
VRK3-214ENST00000598553 HIGD2AQ9BW72 106 aa6.16□□□□□ -1.42
VRK3-214ENST00000598553 TRBV10-2A0A0K0K1G8 114 aa6.15□□□□□ -1.42
VRK3-214ENST00000598553 TRIAP1O43715 76 aa6.15□□□□□ -1.42
VRK3-214ENST00000598553 ANKRD29Q8N6D5 301 aa6.15□□□□□ -1.42
VRK3-214ENST00000598553 C9JAW5 83 aa6.14□□□□□ -1.43
VRK3-214ENST00000598553 KRTAP4-16G5E9R7 235 aaPredicted RBP6.14□□□□□ -1.43
VRK3-214ENST00000598553 H3BT86 120 aa6.14□□□□□ -1.43
VRK3-214ENST00000598553 PRYO14603 147 aa6.14□□□□□ -1.43
VRK3-214ENST00000598553 MTURNQ8N3F0 131 aa6.14□□□□□ -1.43
VRK3-214ENST00000598553 SPRR4Q96PI1 79 aa6.14□□□□□ -1.43
VRK3-214ENST00000598553 TRAV13-2A0A0B4J235 113 aa6.13□□□□□ -1.43
VRK3-214ENST00000598553 TRBV10-3A0A0K0K1G6 114 aa6.13□□□□□ -1.43
VRK3-214ENST00000598553 SPRR1AP35321 89 aa6.13□□□□□ -1.43
VRK3-214ENST00000598553 LST1O00453 97 aa6.12□□□□□ -1.43
VRK3-214ENST00000598553 ERC2-IT1O76042 136 aa6.12□□□□□ -1.43
VRK3-214ENST00000598553 NPC2P61916 151 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms