RNA–Protein interactions for RNA: ENST00000581383.1

SMCHD1-205, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 806 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-205ENST00000581383 TRAPPC2P0DI81 140 aa0.85□□□□□ -2.27
SMCHD1-205ENST00000581383 TRAPPC2BP0DI82 140 aa0.85□□□□□ -2.27
SMCHD1-205ENST00000581383 DEFB130BP0DP73 79 aa0.85□□□□□ -2.27
SMCHD1-205ENST00000581383 DEFB130AP0DP74 79 aa0.85□□□□□ -2.27
SMCHD1-205ENST00000581383 IAPPP10997 89 aa0.85□□□□□ -2.27
SMCHD1-205ENST00000581383 CKS2P33552 79 aa0.85□□□□□ -2.27
SMCHD1-205ENST00000581383 ETV6P41212 452 aa0.85□□□□□ -2.27
SMCHD1-205ENST00000581383 CKS1BP61024 79 aa0.85□□□□□ -2.27
SMCHD1-205ENST00000581383 NCS1P62166 190 aa0.85□□□□□ -2.27
SMCHD1-205ENST00000581383 PRCDQ00LT1 54 aa0.85□□□□□ -2.27
SMCHD1-205ENST00000581383 CATR1Q13166 79 aa0.85□□□□□ -2.27
SMCHD1-205ENST00000581383 SPINK13Q1W4C9 94 aa0.85□□□□□ -2.27
SMCHD1-205ENST00000581383 OCIAD2Q56VL3 154 aa0.85□□□□□ -2.27
SMCHD1-205ENST00000581383 CSAG1Q6PB30 78 aa0.85□□□□□ -2.27
SMCHD1-205ENST00000581383 ZNF436-AS1Q8NC38 126 aaPredicted RBP0.85□□□□□ -2.27
SMCHD1-205ENST00000581383 VSTM2AQ8TAG5 236 aa0.85□□□□□ -2.27
SMCHD1-205ENST00000581383 SCN3BQ9NY72 215 aa0.85□□□□□ -2.27
SMCHD1-205ENST00000581383 BET1LQ9NYM9 111 aa0.85□□□□□ -2.27
SMCHD1-205ENST00000581383 HSPB8Q9UJY1 196 aa0.85□□□□□ -2.27
SMCHD1-205ENST00000581383 PAIP2BQ9ULR5 123 aaKnown RBP0.85□□□□□ -2.27
SMCHD1-205ENST00000581383 LRP2P98164 4655 aa0.85□□□□□ -2.27
SMCHD1-205ENST00000581383 PKHD1L1Q86WI1 4243 aa0.85□□□□□ -2.27
SMCHD1-205ENST00000581383 NEBP20929 6669 aa0.84□□□□□ -2.27
SMCHD1-205ENST00000581383 DOCK11Q5JSL3 2073 aa0.84□□□□□ -2.27
SMCHD1-205ENST00000581383 TRBV7-1A0A0A6YYK4 115 aa0.84□□□□□ -2.27
SMCHD1-205ENST00000581383 CEBPZOSA8MTT3 80 aa0.84□□□□□ -2.27
SMCHD1-205ENST00000581383 ZNF727A8MUV8 499 aa0.84□□□□□ -2.27
SMCHD1-205ENST00000581383 FAM25AB3EWG3 89 aa0.84□□□□□ -2.27
SMCHD1-205ENST00000581383 FAM25CB3EWG5 89 aa0.84□□□□□ -2.27
SMCHD1-205ENST00000581383 FAM25GB3EWG6 89 aa0.84□□□□□ -2.27
SMCHD1-205ENST00000581383 PDCD5O14737 125 aa0.84□□□□□ -2.27
SMCHD1-205ENST00000581383 IFNA17P01571 189 aa0.84□□□□□ -2.27
SMCHD1-205ENST00000581383 SMR3BP02814 79 aaPredicted RBP0.84□□□□□ -2.27
SMCHD1-205ENST00000581383 CD3DP04234 171 aa0.84□□□□□ -2.27
SMCHD1-205ENST00000581383 IGLC1P0CG04 106 aa0.84□□□□□ -2.27
SMCHD1-205ENST00000581383 HTN1P15515 57 aa0.84□□□□□ -2.27
SMCHD1-205ENST00000581383 HIST1H1BP16401 226 aaKnown RBP0.84□□□□□ -2.27
SMCHD1-205ENST00000581383 RPL37AP61513 92 aaKnown RBP0.84□□□□□ -2.27
SMCHD1-205ENST00000581383 HIST1H1AQ02539 215 aaPredicted RBP0.84□□□□□ -2.27
SMCHD1-205ENST00000581383 WFDC2Q14508 124 aa0.84□□□□□ -2.27
SMCHD1-205ENST00000581383 Q5VSD8 79 aa0.84□□□□□ -2.27
SMCHD1-205ENST00000581383 LINC00299Q6ZSB3 139 aa0.84□□□□□ -2.27
SMCHD1-205ENST00000581383 SMIM7Q9BQ49 75 aa0.84□□□□□ -2.27
SMCHD1-205ENST00000581383 PDCD10Q9BUL8 212 aa0.84□□□□□ -2.27
SMCHD1-205ENST00000581383 NDUFA4L2Q9NRX3 87 aa0.84□□□□□ -2.27
SMCHD1-205ENST00000581383 TMEM14BQ9NUH8 114 aa0.84□□□□□ -2.27
SMCHD1-205ENST00000581383 SPANXCQ9NY87 97 aa0.84□□□□□ -2.27
SMCHD1-205ENST00000581383 COMMD3Q9UBI1 195 aa0.84□□□□□ -2.27
SMCHD1-205ENST00000581383 FSIP2Q5CZC0 6907 aa0.83□□□□□ -2.28
SMCHD1-205ENST00000581383 TRAV1-2A0A0B4J238 106 aa0.83□□□□□ -2.28
SMCHD1-205ENST00000581383 IGHV1-24A0A0C4DH33 117 aa0.83□□□□□ -2.28
SMCHD1-205ENST00000581383 NBDYA0A0U1RRE5 68 aa0.83□□□□□ -2.28
SMCHD1-205ENST00000581383 A6NN06 94 aa0.83□□□□□ -2.28
SMCHD1-205ENST00000581383 SNAPC5O75971 98 aa0.83□□□□□ -2.28
SMCHD1-205ENST00000581383 SPART-AS1P0CW21 52 aa0.83□□□□□ -2.28
SMCHD1-205ENST00000581383 HLA-DRB4P13762 266 aa0.83□□□□□ -2.28
SMCHD1-205ENST00000581383 PDE6GP18545 87 aa0.83□□□□□ -2.28
SMCHD1-205ENST00000581383 SNCAP37840 140 aa0.83□□□□□ -2.28
SMCHD1-205ENST00000581383 AKR1D1P51857 326 aa0.83□□□□□ -2.28
SMCHD1-205ENST00000581383 RRAS2P62070 204 aaPredicted RBP0.83□□□□□ -2.28
SMCHD1-205ENST00000581383 SPCS2Q15005 226 aa0.83□□□□□ -2.28
SMCHD1-205ENST00000581383 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.83□□□□□ -2.28
SMCHD1-205ENST00000581383 WFDC10BQ8IUB3 73 aa0.83□□□□□ -2.28
SMCHD1-205ENST00000581383 NAA60Q9H7X0 242 aa0.83□□□□□ -2.28
SMCHD1-205ENST00000581383 NOP10Q9NPE3 64 aaKnown RBP0.83□□□□□ -2.28
SMCHD1-205ENST00000581383 COPZ2Q9P299 210 aa0.83□□□□□ -2.28
SMCHD1-205ENST00000581383 HLA-DRB4X5D2U9 266 aa0.83□□□□□ -2.28
SMCHD1-205ENST00000581383 SYNE2Q8WXH0 6885 aaKnown RBP0.83□□□□□ -2.28
SMCHD1-205ENST00000581383 TNXBP22105 4242 aa0.82□□□□□ -2.28
SMCHD1-205ENST00000581383 TRGV1A0A0A0MS02 117 aa0.82□□□□□ -2.28
SMCHD1-205ENST00000581383 TRAV12-3A0A0B4J271 114 aa0.82□□□□□ -2.28
SMCHD1-205ENST00000581383 UBE2L5PA0A1B0GUS4 154 aa0.82□□□□□ -2.28
SMCHD1-205ENST00000581383 CRYM-AS1A6NIL9 109 aa0.82□□□□□ -2.28
SMCHD1-205ENST00000581383 F6UZH7 168 aa0.82□□□□□ -2.28
SMCHD1-205ENST00000581383 M0R3E3 92 aa0.82□□□□□ -2.28
SMCHD1-205ENST00000581383 SSSCA1O60232 199 aa0.82□□□□□ -2.28
SMCHD1-205ENST00000581383 IGKCP01834 107 aa0.82□□□□□ -2.28
SMCHD1-205ENST00000581383 SFTA3P0C7M3 94 aa0.82□□□□□ -2.28
SMCHD1-205ENST00000581383 PYYP10082 97 aa0.82□□□□□ -2.28
SMCHD1-205ENST00000581383 IL7P13232 177 aa0.82□□□□□ -2.28
SMCHD1-205ENST00000581383 KLK9Q2XQG4 91 aa0.82□□□□□ -2.28
SMCHD1-205ENST00000581383 NMSQ5H8A3 153 aa0.82□□□□□ -2.28
SMCHD1-205ENST00000581383 TSC22D3Q99576 134 aa0.82□□□□□ -2.28
SMCHD1-205ENST00000581383 SMIM3Q9BZL3 60 aa0.82□□□□□ -2.28
SMCHD1-205ENST00000581383 TIMM8BQ9Y5J9 83 aaPredicted RBP0.82□□□□□ -2.28
SMCHD1-205ENST00000581383 MDN1Q9NU22 5596 aa0.82□□□□□ -2.28
SMCHD1-205ENST00000581383 SRRM2Q9UQ35 2752 aaKnown RBP0.81□□□□□ -2.28
SMCHD1-205ENST00000581383 A0A087WTM6 91 aa0.81□□□□□ -2.28
SMCHD1-205ENST00000581383 TRAV2A0A0B4J234 112 aa0.81□□□□□ -2.28
SMCHD1-205ENST00000581383 H3BQ15 152 aa0.81□□□□□ -2.28
SMCHD1-205ENST00000581383 CORTO00230 105 aa0.81□□□□□ -2.28
SMCHD1-205ENST00000581383 SFT2D2O95562 160 aa0.81□□□□□ -2.28
SMCHD1-205ENST00000581383 IGHV3-30P01768 117 aa0.81□□□□□ -2.28
SMCHD1-205ENST00000581383 AKAIN1P0CW23 69 aa0.81□□□□□ -2.28
SMCHD1-205ENST00000581383 IGHV3-30-5P0DP03 117 aa0.81□□□□□ -2.28
SMCHD1-205ENST00000581383 CCL18P55774 89 aa0.81□□□□□ -2.28
SMCHD1-205ENST00000581383 S100A10P60903 97 aa0.81□□□□□ -2.28
SMCHD1-205ENST00000581383 SMCO1Q147U7 214 aa0.81□□□□□ -2.28
SMCHD1-205ENST00000581383 CLLU1Q5K131 121 aa0.81□□□□□ -2.28
SMCHD1-205ENST00000581383 MIC13Q5XKP0 118 aa0.81□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 133.3 ms