RNA–Protein interactions for RNA: ENST00000577300.1

SMCHD1-202, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 506 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-202ENST00000577300 COL4A2P08572 1712 aa1.52□□□□□ -2.17
SMCHD1-202ENST00000577300 A0A0G2JQZ4 141 aa1.52□□□□□ -2.17
SMCHD1-202ENST00000577300 H3BRN7 92 aa1.52□□□□□ -2.17
SMCHD1-202ENST00000577300 IGLV6-57P01721 117 aa1.52□□□□□ -2.17
SMCHD1-202ENST00000577300 COX17Q14061 63 aa1.52□□□□□ -2.17
SMCHD1-202ENST00000577300 C4orf3Q8WVX3 66 aa1.52□□□□□ -2.17
SMCHD1-202ENST00000577300 CRIPTQ9P021 101 aa1.52□□□□□ -2.17
SMCHD1-202ENST00000577300 CCL26Q9Y258 94 aa1.52□□□□□ -2.17
SMCHD1-202ENST00000577300 UNC13CQ8NB66 2214 aa1.52□□□□□ -2.17
SMCHD1-202ENST00000577300 RP1P56715 2156 aa1.52□□□□□ -2.17
SMCHD1-202ENST00000577300 COX6A2Q02221 97 aa1.51□□□□□ -2.17
SMCHD1-202ENST00000577300 PSORS1C2Q9UIG4 136 aa1.51□□□□□ -2.17
SMCHD1-202ENST00000577300 ACYP2P14621 99 aa1.5□□□□□ -2.17
SMCHD1-202ENST00000577300 SSBP3-AS1Q7Z2R9 100 aa1.5□□□□□ -2.17
SMCHD1-202ENST00000577300 SPAG17Q6Q759 2223 aa1.5□□□□□ -2.17
SMCHD1-202ENST00000577300 G3V318 75 aa1.49□□□□□ -2.17
SMCHD1-202ENST00000577300 DEFB104AQ8WTQ1 72 aa1.49□□□□□ -2.17
SMCHD1-202ENST00000577300 F5P12259 2224 aa1.48□□□□□ -2.17
SMCHD1-202ENST00000577300 KNTC1P50748 2209 aa1.48□□□□□ -2.17
SMCHD1-202ENST00000577300 K7EQZ3 153 aa1.48□□□□□ -2.17
SMCHD1-202ENST00000577300 M0QY20 66 aa1.48□□□□□ -2.17
SMCHD1-202ENST00000577300 MRPL33O75394 65 aaKnown RBP1.48□□□□□ -2.17
SMCHD1-202ENST00000577300 ANGP03950 147 aaKnown RBP1.48□□□□□ -2.17
SMCHD1-202ENST00000577300 CADP27708 2225 aa1.47□□□□□ -2.17
SMCHD1-202ENST00000577300 LY6G6CO95867 125 aa1.47□□□□□ -2.17
SMCHD1-202ENST00000577300 WT1-ASQ06250 92 aa1.47□□□□□ -2.17
SMCHD1-202ENST00000577300 PCOTHQ58A44 107 aa1.47□□□□□ -2.17
SMCHD1-202ENST00000577300 RPL39P5Q59GN2 51 aa1.47□□□□□ -2.17
SMCHD1-202ENST00000577300 CACNA1CQ13936 2221 aa1.46□□□□□ -2.18
SMCHD1-202ENST00000577300 C10orf55Q5SWW7 151 aa1.46□□□□□ -2.18
SMCHD1-202ENST00000577300 Q6ZRX8 168 aa1.46□□□□□ -2.18
SMCHD1-202ENST00000577300 WFDC13Q8IUB5 93 aa1.46□□□□□ -2.18
SMCHD1-202ENST00000577300 TMEM167AQ8TBQ9 72 aa1.46□□□□□ -2.18
SMCHD1-202ENST00000577300 TECTAO75443 2155 aa1.46□□□□□ -2.18
SMCHD1-202ENST00000577300 MED13LQ71F56 2210 aa1.46□□□□□ -2.18
SMCHD1-202ENST00000577300 IGLV5-48A0A075B6I7 105 aa1.45□□□□□ -2.18
SMCHD1-202ENST00000577300 GVQW2A0A096LPI5 108 aaPredicted RBP1.45□□□□□ -2.18
SMCHD1-202ENST00000577300 DEFB108AA8MXU0 73 aa1.45□□□□□ -2.18
SMCHD1-202ENST00000577300 LYNX1G3V0Z9 82 aa1.45□□□□□ -2.18
SMCHD1-202ENST00000577300 STATHP02808 62 aa1.45□□□□□ -2.18
SMCHD1-202ENST00000577300 PLAC4Q8WY50 150 aa1.45□□□□□ -2.18
SMCHD1-202ENST00000577300 SPTY2D1-AS1A0A0U1RR47 76 aa1.44□□□□□ -2.18
SMCHD1-202ENST00000577300 INE1O15225 51 aa1.44□□□□□ -2.18
SMCHD1-202ENST00000577300 H0YAA0 97 aa1.43□□□□□ -2.18
SMCHD1-202ENST00000577300 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.43□□□□□ -2.18
SMCHD1-202ENST00000577300 WFDC10BQ8IUB3 73 aa1.43□□□□□ -2.18
SMCHD1-202ENST00000577300 A8MTW9 85 aa1.42□□□□□ -2.18
SMCHD1-202ENST00000577300 K7EIM0 57 aa1.42□□□□□ -2.18
SMCHD1-202ENST00000577300 KRTAP12-1P59990 96 aa1.42□□□□□ -2.18
SMCHD1-202ENST00000577300 DEFB134Q4QY38 66 aa1.42□□□□□ -2.18
SMCHD1-202ENST00000577300 Q6ZSA8 131 aa1.42□□□□□ -2.18
SMCHD1-202ENST00000577300 TP53AIP1Q9HCN2 124 aa1.42□□□□□ -2.18
SMCHD1-202ENST00000577300 KMT2BQ9UMN6 2715 aaPredicted RBP1.41□□□□□ -2.18
SMCHD1-202ENST00000577300 LELP1Q5T871 98 aa1.41□□□□□ -2.18
SMCHD1-202ENST00000577300 MINOS1Q5TGZ0 78 aa1.41□□□□□ -2.18
SMCHD1-202ENST00000577300 Q6ZRN7 208 aaPredicted RBP1.41□□□□□ -2.18
SMCHD1-202ENST00000577300 C10orf95Q9H7T3 257 aa1.41□□□□□ -2.18
SMCHD1-202ENST00000577300 C6orf48Q9UBA6 75 aa1.41□□□□□ -2.18
SMCHD1-202ENST00000577300 MMP24-AS1A0A0U1RRL7 71 aa1.39□□□□□ -2.19
SMCHD1-202ENST00000577300 TOMM7Q9P0U1 55 aa1.39□□□□□ -2.19
SMCHD1-202ENST00000577300 KAAG1Q9UBP8 84 aa1.39□□□□□ -2.19
SMCHD1-202ENST00000577300 ANKRD17O75179 2603 aaKnown RBP1.39□□□□□ -2.19
SMCHD1-202ENST00000577300 PTPRQQ9UMZ3 2332 aa1.39□□□□□ -2.19
SMCHD1-202ENST00000577300 MRPL34Q9BQ48 92 aaKnown RBP1.38□□□□□ -2.19
SMCHD1-202ENST00000577300 PDE4DIPQ5VU43 2346 aa1.38□□□□□ -2.19
SMCHD1-202ENST00000577300 URB1O60287 2271 aaKnown RBP1.37□□□□□ -2.19
SMCHD1-202ENST00000577300 H0YGG7 62 aa1.37□□□□□ -2.19
SMCHD1-202ENST00000577300 H1FX-AS1Q4G0G2 97 aa1.37□□□□□ -2.19
SMCHD1-202ENST00000577300 CLPSL2Q6UWE3 100 aa1.37□□□□□ -2.19
SMCHD1-202ENST00000577300 C10orf99Q6UWK7 81 aa1.37□□□□□ -2.19
SMCHD1-202ENST00000577300 ZFHX2Q9C0A1 2572 aaPredicted RBP1.37□□□□□ -2.19
SMCHD1-202ENST00000577300 USF3Q68DE3 2245 aa1.36□□□□□ -2.19
SMCHD1-202ENST00000577300 RTTNQ86VV8 2226 aa1.36□□□□□ -2.19
SMCHD1-202ENST00000577300 BPTFQ12830 3046 aa1.36□□□□□ -2.19
SMCHD1-202ENST00000577300 DEFB130BP0DP73 79 aa1.36□□□□□ -2.19
SMCHD1-202ENST00000577300 DEFB130AP0DP74 79 aa1.36□□□□□ -2.19
SMCHD1-202ENST00000577300 COX14Q96I36 57 aa1.36□□□□□ -2.19
SMCHD1-202ENST00000577300 ABCA1O95477 2261 aa1.36□□□□□ -2.19
SMCHD1-202ENST00000577300 AHCTF1Q8WYP5 2266 aa1.35□□□□□ -2.19
SMCHD1-202ENST00000577300 KRTAP21-3Q3LHN1 58 aa1.35□□□□□ -2.19
SMCHD1-202ENST00000577300 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.34□□□□□ -2.192e-8■■■■□ 24.6
SMCHD1-202ENST00000577300 BAHCC1Q9P281 2608 aa1.34□□□□□ -2.19
SMCHD1-202ENST00000577300 APELAP0DMC3 54 aa1.34□□□□□ -2.19
SMCHD1-202ENST00000577300 LYNX1P0DP58 116 aa1.34□□□□□ -2.19
SMCHD1-202ENST00000577300 RPL37P61927 97 aaKnown RBP1.34□□□□□ -2.19
SMCHD1-202ENST00000577300 KLK9Q2XQG4 91 aa1.34□□□□□ -2.19
SMCHD1-202ENST00000577300 COX6B2Q6YFQ2 88 aa1.34□□□□□ -2.19
SMCHD1-202ENST00000577300 DEFB105AQ8NG35 78 aa1.34□□□□□ -2.19
SMCHD1-202ENST00000577300 ASCC3Q8N3C0 2202 aaKnown RBP1.34□□□□□ -2.2
SMCHD1-202ENST00000577300 ASXL3Q9C0F0 2248 aa1.34□□□□□ -2.2
SMCHD1-202ENST00000577300 FLG2Q5D862 2391 aaPredicted RBP1.33□□□□□ -2.2
SMCHD1-202ENST00000577300 DEFB131AP59861 70 aa1.33□□□□□ -2.2
SMCHD1-202ENST00000577300 BRWD1Q9NSI6 2320 aa1.32□□□□□ -2.2
SMCHD1-202ENST00000577300 K7EIL1 84 aa1.32□□□□□ -2.2
SMCHD1-202ENST00000577300 DEFB1P60022 68 aa1.32□□□□□ -2.2
SMCHD1-202ENST00000577300 UNQ6190/PRO20217Q6UXQ8 127 aa1.32□□□□□ -2.2
SMCHD1-202ENST00000577300 PLCE1Q9P212 2302 aa1.32□□□□□ -2.2
SMCHD1-202ENST00000577300 DOPEY2Q9Y3R5 2298 aa1.31□□□□□ -2.2
SMCHD1-202ENST00000577300 DEFB123Q8N688 67 aa1.31□□□□□ -2.2
SMCHD1-202ENST00000577300 FN1P02751 2386 aaKnown RBP1.3□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms