RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 HMGA1P17096 107 aaKnown RBP0.35□□□□□ -2.35
CHD3-217ENST00000574022 COX6B2Q6YFQ2 88 aa0.35□□□□□ -2.35
CHD3-217ENST00000574022 CDKN2A-AS1Q9UH64 79 aa0.35□□□□□ -2.35
CHD3-217ENST00000574022 U3KQA8 63 aa0.35□□□□□ -2.35
CHD3-217ENST00000574022 ASXL1Q8IXJ9 1541 aa0.34□□□□□ -2.35
CHD3-217ENST00000574022 NHSQ6T4R5 1651 aa0.34□□□□□ -2.35
CHD3-217ENST00000574022 FCGBPQ9Y6R7 5405 aaPredicted RBP0.34□□□□□ -2.35
CHD3-217ENST00000574022 MADDQ8WXG6 1647 aa0.34□□□□□ -2.36
CHD3-217ENST00000574022 RALGAPBQ86X10 1494 aa0.34□□□□□ -2.36
CHD3-217ENST00000574022 EFCAB5A4FU69 1503 aa0.33□□□□□ -2.36
CHD3-217ENST00000574022 INO80Q9ULG1 1556 aaPredicted RBP0.33□□□□□ -2.36
CHD3-217ENST00000574022 HFM1A2PYH4 1435 aa0.33□□□□□ -2.36
CHD3-217ENST00000574022 LELP1Q5T871 98 aa0.33□□□□□ -2.36
CHD3-217ENST00000574022 HILPDAQ9Y5L2 63 aa0.33□□□□□ -2.36
CHD3-217ENST00000574022 FRAS1Q86XX4 4008 aa0.33□□□□□ -2.36
CHD3-217ENST00000574022 THOC2Q8NI27 1593 aaKnown RBP0.32□□□□□ -2.36
CHD3-217ENST00000574022 ZFYVE26Q68DK2 2539 aa0.32□□□□□ -2.36
CHD3-217ENST00000574022 CCDC180Q9P1Z9 1646 aa0.32□□□□□ -2.36
CHD3-217ENST00000574022 NDUFA3O95167 84 aa0.32□□□□□ -2.36
CHD3-217ENST00000574022 ATXN8Q156A1 80 aa0.32□□□□□ -2.36
CHD3-217ENST00000574022 GNG13Q9P2W3 67 aa0.32□□□□□ -2.36
CHD3-217ENST00000574022 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.32□□□□□ -2.36
CHD3-217ENST00000574022 TJP1Q07157 1748 aa0.32□□□□□ -2.36
CHD3-217ENST00000574022 ERICH3Q5RHP9 1530 aa0.32□□□□□ -2.36
CHD3-217ENST00000574022 SPTBN1Q01082 2364 aaKnown RBP0.32□□□□□ -2.36
CHD3-217ENST00000574022 DIP2AQ14689 1571 aa0.32□□□□□ -2.36
CHD3-217ENST00000574022 RNF17Q9BXT8 1623 aaKnown RBP0.31□□□□□ -2.36
CHD3-217ENST00000574022 GVINP1Q7Z2Y8 2422 aa0.31□□□□□ -2.36
CHD3-217ENST00000574022 WFDC13Q8IUB5 93 aa0.31□□□□□ -2.36
CHD3-217ENST00000574022 PKDREJQ9NTG1 2253 aa0.31□□□□□ -2.36
CHD3-217ENST00000574022 AKAP6Q13023 2319 aa0.3□□□□□ -2.36
CHD3-217ENST00000574022 SMIM31A0A1B0GVY4 71 aa0.3□□□□□ -2.36
CHD3-217ENST00000574022 LOC730098B7Z3J9 87 aa0.3□□□□□ -2.36
CHD3-217ENST00000574022 KRTAP21-1Q3LI58 79 aa0.3□□□□□ -2.36
CHD3-217ENST00000574022 ENHOQ6UWT2 76 aa0.3□□□□□ -2.36
CHD3-217ENST00000574022 UBL5Q9BZL1 73 aa0.3□□□□□ -2.36
CHD3-217ENST00000574022 PRO3102Q9H379 93 aa0.3□□□□□ -2.36
CHD3-217ENST00000574022 PLXNC1O60486 1568 aa0.3□□□□□ -2.36
CHD3-217ENST00000574022 IGF2RP11717 2491 aa0.29□□□□□ -2.36
CHD3-217ENST00000574022 DEPDC5O75140 1603 aa0.29□□□□□ -2.36
CHD3-217ENST00000574022 MRPL33O75394 65 aaKnown RBP0.29□□□□□ -2.36
CHD3-217ENST00000574022 KRTAP5-10Q6L8G5 202 aa0.29□□□□□ -2.36
CHD3-217ENST00000574022 TENM4Q6N022 2769 aa0.29□□□□□ -2.36
CHD3-217ENST00000574022 VWFP04275 2813 aa0.29□□□□□ -2.36
CHD3-217ENST00000574022 NAV2Q8IVL1 2488 aa0.29□□□□□ -2.36
CHD3-217ENST00000574022 UNC79Q9P2D8 2635 aa0.29□□□□□ -2.36
CHD3-217ENST00000574022 TENM3Q9P273 2699 aa0.29□□□□□ -2.36
CHD3-217ENST00000574022 CNOT1A5YKK6 2376 aaKnown RBP0.28□□□□□ -2.36
CHD3-217ENST00000574022 C3P01024 1663 aa0.28□□□□□ -2.36
CHD3-217ENST00000574022 C3orf79P0CE67 100 aa0.28□□□□□ -2.36
CHD3-217ENST00000574022 LINC00158P58513 81 aa0.28□□□□□ -2.36
CHD3-217ENST00000574022 KCNQ1DNQ9H478 68 aa0.28□□□□□ -2.36
CHD3-217ENST00000574022 CSMD3Q7Z407 3707 aa0.28□□□□□ -2.37
CHD3-217ENST00000574022 USP24Q9UPU5 2620 aa0.28□□□□□ -2.37
CHD3-217ENST00000574022 CHD6Q8TD26 2715 aa0.28□□□□□ -2.37
CHD3-217ENST00000574022 WNK2Q9Y3S1 2297 aa0.27□□□□□ -2.37
CHD3-217ENST00000574022 A0A087WWC5 75 aa0.27□□□□□ -2.37
CHD3-217ENST00000574022 DEFB131BA0A096LNP1 70 aa0.27□□□□□ -2.37
CHD3-217ENST00000574022 TIAM1Q13009 1591 aa0.27□□□□□ -2.37
CHD3-217ENST00000574022 ABCA6Q8N139 1617 aa0.27□□□□□ -2.37
CHD3-217ENST00000574022 OTOGQ6ZRI0 2925 aa0.26□□□□□ -2.37
CHD3-217ENST00000574022 NCOR1O75376 2440 aa0.26□□□□□ -2.37
CHD3-217ENST00000574022 ANK2Q01484 3957 aa0.26□□□□□ -2.37
CHD3-217ENST00000574022 H0YAA0 97 aa0.25□□□□□ -2.37
CHD3-217ENST00000574022 M0R2T5 61 aa0.25□□□□□ -2.37
CHD3-217ENST00000574022 PRM1P04553 51 aa0.25□□□□□ -2.37
CHD3-217ENST00000574022 NCOR2Q9Y618 2525 aa0.25□□□□□ -2.37
CHD3-217ENST00000574022 ATRQ13535 2644 aa0.24□□□□□ -2.37
CHD3-217ENST00000574022 KIAA0586Q9BVV6 1533 aa0.24□□□□□ -2.37
CHD3-217ENST00000574022 PTPN13Q12923 2485 aa0.24□□□□□ -2.37
CHD3-217ENST00000574022 MUC16Q8WXI7 14507 aa0.24□□□□□ -2.37
CHD3-217ENST00000574022 ETDCA0A1B0GVM5 59 aa0.24□□□□□ -2.37
CHD3-217ENST00000574022 DEFB135Q30KP9 77 aa0.24□□□□□ -2.37
CHD3-217ENST00000574022 S100ZQ8WXG8 99 aa0.24□□□□□ -2.37
CHD3-217ENST00000574022 ABCC6O95255 1503 aa0.23□□□□□ -2.37
CHD3-217ENST00000574022 MAST4O15021 2626 aa0.23□□□□□ -2.37
CHD3-217ENST00000574022 SPTA1P02549 2419 aa0.23□□□□□ -2.37
CHD3-217ENST00000574022 CSPG4Q6UVK1 2322 aa0.23□□□□□ -2.37
CHD3-217ENST00000574022 LINC01549A6NIU2 74 aa0.23□□□□□ -2.37
CHD3-217ENST00000574022 DEFB114Q30KQ6 69 aa0.23□□□□□ -2.37
CHD3-217ENST00000574022 HIVEP3Q5T1R4 2406 aa0.23□□□□□ -2.37
CHD3-217ENST00000574022 ABCA10Q8WWZ4 1543 aa0.23□□□□□ -2.37
CHD3-217ENST00000574022 LY75O60449 1722 aa0.22□□□□□ -2.37
CHD3-217ENST00000574022 ABCA2Q9BZC7 2435 aa0.22□□□□□ -2.37
CHD3-217ENST00000574022 REV3LO60673 3130 aa0.22□□□□□ -2.37
CHD3-217ENST00000574022 PHGR1C9JFL3 82 aa0.22□□□□□ -2.37
CHD3-217ENST00000574022 LYNX1G3V0Z9 82 aa0.22□□□□□ -2.37
CHD3-217ENST00000574022 CRIP1P50238 77 aa0.22□□□□□ -2.37
CHD3-217ENST00000574022 GLI2P10070 1586 aa0.22□□□□□ -2.37
CHD3-217ENST00000574022 ALS2Q96Q42 1657 aa0.21□□□□□ -2.38
CHD3-217ENST00000574022 PKD1L1Q8TDX9 2849 aa0.21□□□□□ -2.38
CHD3-217ENST00000574022 SFTA3P0C7M3 94 aa0.21□□□□□ -2.38
CHD3-217ENST00000574022 IAPPP10997 89 aa0.21□□□□□ -2.38
CHD3-217ENST00000574022 SPRR2DP22532 72 aa0.21□□□□□ -2.38
CHD3-217ENST00000574022 UBR5O95071 2799 aaPredicted RBP0.21□□□□□ -2.38
CHD3-217ENST00000574022 KIF1AQ12756 1690 aa0.21□□□□□ -2.38
CHD3-217ENST00000574022 HRNRQ86YZ3 2850 aaPredicted RBP0.2□□□□□ -2.38
CHD3-217ENST00000574022 KNL1Q8NG31 2342 aa0.2□□□□□ -2.38
CHD3-217ENST00000574022 TNXBP22105 4242 aa0.2□□□□□ -2.38
CHD3-217ENST00000574022 H0YGG7 62 aa0.2□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms