RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 HIVEP2P31629 2446 aa4.76□□□□□ -1.65
USP3-210ENST00000559192 Q6ZRP5 223 aa4.75□□□□□ -1.65
USP3-210ENST00000559192 Q8NBF4 154 aa4.75□□□□□ -1.65
USP3-210ENST00000559192 MYO18BQ8IUG5 2567 aa4.75□□□□□ -1.65
USP3-210ENST00000559192 DMDP11532 3685 aa4.75□□□□□ -1.65
USP3-210ENST00000559192 TRBV7-4A0A0J9YYF1 115 aa4.74□□□□□ -1.65
USP3-210ENST00000559192 FAM168BA1KXE4 195 aa4.74□□□□□ -1.65
USP3-210ENST00000559192 C19orf73Q9NVV2 129 aa4.74□□□□□ -1.65
USP3-210ENST00000559192 PIEZO1Q92508 2521 aa4.74□□□□□ -1.65
USP3-210ENST00000559192 CDC42SE1Q9NRR8 79 aa4.74□□□□□ -1.65
USP3-210ENST00000559192 MYO9AB2RTY4 2548 aa4.74□□□□□ -1.65
USP3-210ENST00000559192 RPL37AP61513 92 aaKnown RBP4.74□□□□□ -1.65
USP3-210ENST00000559192 Q8NAQ8 132 aa4.74□□□□□ -1.65
USP3-210ENST00000559192 LINC01556Q5JQF7 62 aa4.73□□□□□ -1.65
USP3-210ENST00000559192 Q5XG85 94 aa4.73□□□□□ -1.65
USP3-210ENST00000559192 GVQW2A0A096LPI5 108 aaPredicted RBP4.73□□□□□ -1.65
USP3-210ENST00000559192 CCDC168Q8NDH2 2452 aa4.73□□□□□ -1.65
USP3-210ENST00000559192 K7EQZ3 153 aa4.73□□□□□ -1.65
USP3-210ENST00000559192 Q6ZRX8 168 aa4.73□□□□□ -1.65
USP3-210ENST00000559192 FN1P02751 2386 aaKnown RBP4.72□□□□□ -1.65
USP3-210ENST00000559192 LINC01554Q52M75 96 aa4.72□□□□□ -1.65
USP3-210ENST00000559192 AKAP13Q12802 2813 aa4.72□□□□□ -1.65
USP3-210ENST00000559192 OXTP01178 125 aa4.72□□□□□ -1.65
USP3-210ENST00000559192 LINC00476Q8WZB0 136 aa4.72□□□□□ -1.65
USP3-210ENST00000559192 LINC00528Q8N1L1 170 aa4.71□□□□□ -1.65
USP3-210ENST00000559192 DCHS1Q96JQ0 3298 aa4.71□□□□□ -1.66
USP3-210ENST00000559192 POLQO75417 2590 aa4.71□□□□□ -1.66
USP3-210ENST00000559192 A0A0G2JQZ4 141 aa4.71□□□□□ -1.66
USP3-210ENST00000559192 A0A1W2PNN7 141 aa4.71□□□□□ -1.66
USP3-210ENST00000559192 Q8NDZ9 215 aa4.71□□□□□ -1.66
USP3-210ENST00000559192 ASPMQ8IZT6 3477 aa4.71□□□□□ -1.66
USP3-210ENST00000559192 USP9XQ93008 2570 aaPredicted RBP4.71□□□□□ -1.66
USP3-210ENST00000559192 ZZEF1O43149 2961 aa4.71□□□□□ -1.66
USP3-210ENST00000559192 LOC400499M0QZD8 3231 aa4.7□□□□□ -1.66
USP3-210ENST00000559192 CHD8Q9HCK8 2581 aa4.7□□□□□ -1.66
USP3-210ENST00000559192 ANKRD17O75179 2603 aaKnown RBP4.7□□□□□ -1.66
USP3-210ENST00000559192 APLNQ9ULZ1 77 aa4.7□□□□□ -1.66
USP3-210ENST00000559192 KRTAP10-3P60369 221 aa4.7□□□□□ -1.66
USP3-210ENST00000559192 KALRNO60229 2985 aa4.69□□□□□ -1.66
USP3-210ENST00000559192 ABCA2Q9BZC7 2435 aa4.69□□□□□ -1.66
USP3-210ENST00000559192 LINC00612Q8N6U2 182 aa4.69□□□□□ -1.66
USP3-210ENST00000559192 C15orf56Q8N910 161 aa4.69□□□□□ -1.66
USP3-210ENST00000559192 USP9YO00507 2555 aaPredicted RBP4.69□□□□□ -1.66
USP3-210ENST00000559192 LUZP6Q538Z0 58 aa4.69□□□□□ -1.66
USP3-210ENST00000559192 Q8N377 158 aa4.69□□□□□ -1.66
USP3-210ENST00000559192 LRBAP50851 2863 aa4.68□□□□□ -1.66
USP3-210ENST00000559192 TLN2Q9Y4G6 2542 aa4.68□□□□□ -1.66
USP3-210ENST00000559192 SETD2Q9BYW2 2564 aaPredicted RBP4.68□□□□□ -1.66
USP3-210ENST00000559192 ADGRG4Q8IZF6 3080 aa4.68□□□□□ -1.66
USP3-210ENST00000559192 PRR34Q9NV39 138 aa4.68□□□□□ -1.66
USP3-210ENST00000559192 A8MWP4 228 aa4.68□□□□□ -1.66
USP3-210ENST00000559192 MOBPQ13875 183 aa4.68□□□□□ -1.66
USP3-210ENST00000559192 NOTCH2Q04721 2471 aa4.67□□□□□ -1.66
USP3-210ENST00000559192 FAM229BQ4G0N7 80 aa4.67□□□□□ -1.66
USP3-210ENST00000559192 EPM2AB3EWF7 344 aa4.67□□□□□ -1.66
USP3-210ENST00000559192 Q1T7F1 81 aa4.66□□□□□ -1.66
USP3-210ENST00000559192 KCNQ1DNQ9H478 68 aa4.66□□□□□ -1.66
USP3-210ENST00000559192 SMG1Q96Q15 3661 aaKnown RBP4.66□□□□□ -1.66
USP3-210ENST00000559192 IGLV1-50A0A075B6I6 118 aa4.66□□□□□ -1.66
USP3-210ENST00000559192 LINC00313P59037 77 aa4.66□□□□□ -1.66
USP3-210ENST00000559192 SPACA4Q8TDM5 124 aa4.65□□□□□ -1.66
USP3-210ENST00000559192 PHF5AQ7RTV0 110 aaKnown RBP4.65□□□□□ -1.66
USP3-210ENST00000559192 F8P00451 2351 aa4.65□□□□□ -1.67
USP3-210ENST00000559192 PRAC1Q96KF2 57 aa4.65□□□□□ -1.67
USP3-210ENST00000559192 MRPL34Q9BQ48 92 aaKnown RBP4.65□□□□□ -1.67
USP3-210ENST00000559192 CSMD1Q96PZ7 3565 aa4.64□□□□□ -1.67
USP3-210ENST00000559192 FP248Q71RG6 208 aaPredicted RBP4.64□□□□□ -1.67
USP3-210ENST00000559192 TACC2O95359 2948 aa4.64□□□□□ -1.67
USP3-210ENST00000559192 FAM229AH3BQW9 127 aa4.64□□□□□ -1.67
USP3-210ENST00000559192 SPTBN4Q9H254 2564 aa4.64□□□□□ -1.67
USP3-210ENST00000559192 H3BNG1 76 aa4.64□□□□□ -1.67
USP3-210ENST00000559192 IGFL1Q6UW32 110 aa4.64□□□□□ -1.67
USP3-210ENST00000559192 ABCA12Q86UK0 2595 aa4.64□□□□□ -1.67
USP3-210ENST00000559192 A0A1W2PNM2 257 aa4.63□□□□□ -1.67
USP3-210ENST00000559192 KRTAP1-3Q8IUG1 177 aa4.63□□□□□ -1.67
USP3-210ENST00000559192 OCR1Q9BZK8 76 aa4.63□□□□□ -1.67
USP3-210ENST00000559192 LINC00588Q9Y4M8 146 aa4.63□□□□□ -1.67
USP3-210ENST00000559192 DMXL2Q8TDJ6 3036 aa4.63□□□□□ -1.67
USP3-210ENST00000559192 C1orf134Q5TEV5 83 aa4.63□□□□□ -1.67
USP3-210ENST00000559192 NUPR2A6NF83 97 aa4.63□□□□□ -1.67
USP3-210ENST00000559192 IGLV5-52A0A0A0MRZ9 124 aa4.62□□□□□ -1.67
USP3-210ENST00000559192 CHTF8P0CG12 524 aa4.62□□□□□ -1.67
USP3-210ENST00000559192 JMJD1CQ15652 2540 aa4.62□□□□□ -1.67
USP3-210ENST00000559192 SPANXA2-OT1Q8N9U9 137 aa4.62□□□□□ -1.67
USP3-210ENST00000559192 A0A0A0MQY5 61 aa4.61□□□□□ -1.67
USP3-210ENST00000559192 CASC10Q5T4H9 136 aa4.61□□□□□ -1.67
USP3-210ENST00000559192 LY6G6CO95867 125 aa4.6□□□□□ -1.67
USP3-210ENST00000559192 CFAP47Q6ZTR5 3102 aa4.6□□□□□ -1.67
USP3-210ENST00000559192 KRTAP10-11P60412 298 aa4.59□□□□□ -1.67
USP3-210ENST00000559192 DNAH10OSP0CZ25 163 aa4.59□□□□□ -1.68
USP3-210ENST00000559192 Q75L30 129 aa4.59□□□□□ -1.68
USP3-210ENST00000559192 LAMA5O15230 3695 aa4.59□□□□□ -1.68
USP3-210ENST00000559192 C16orf90A8MZG2 172 aa4.59□□□□□ -1.68
USP3-210ENST00000559192 C8orf17Q9NRJ1 99 aa4.58□□□□□ -1.68
USP3-210ENST00000559192 Q96NJ1 140 aa4.58□□□□□ -1.68
USP3-210ENST00000559192 IGLV5-48A0A075B6I7 105 aa4.57□□□□□ -1.68
USP3-210ENST00000559192 TNRC18O15417 2968 aaPredicted RBP4.57□□□□□ -1.68
USP3-210ENST00000559192 A0A0D9SG42 100 aa4.57□□□□□ -1.68
USP3-210ENST00000559192 DSCR10P59022 87 aa4.57□□□□□ -1.68
USP3-210ENST00000559192 KRTAP1-1Q07627 177 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms