RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 DNMBPQ6XZF7 1577 aa0.24□□□□□ -2.37
VPS13C-207ENST00000558919 MAST1Q9Y2H9 1570 aa0.24□□□□□ -2.37
VPS13C-207ENST00000558919 NEXMIFQ5QGS0 1516 aa0.24□□□□□ -2.37
VPS13C-207ENST00000558919 ABCC2Q92887 1545 aa0.24□□□□□ -2.37
VPS13C-207ENST00000558919 FANCAO15360 1455 aa0.24□□□□□ -2.37
VPS13C-207ENST00000558919 MAGI2Q86UL8 1455 aa0.24□□□□□ -2.37
VPS13C-207ENST00000558919 NLRP1Q9C000 1473 aa0.24□□□□□ -2.37
VPS13C-207ENST00000558919 F5P12259 2224 aa0.24□□□□□ -2.37
VPS13C-207ENST00000558919 FRYQ5TBA9 3013 aa0.24□□□□□ -2.37
VPS13C-207ENST00000558919 D6R8Y8 96 aa0.24□□□□□ -2.37
VPS13C-207ENST00000558919 PEA15Q15121 130 aa0.24□□□□□ -2.37
VPS13C-207ENST00000558919 DEFB109BQ30KR1 87 aa0.24□□□□□ -2.37
VPS13C-207ENST00000558919 MUSTN1Q8IVN3 82 aa0.24□□□□□ -2.37
VPS13C-207ENST00000558919 USMG5Q96IX5 58 aa0.24□□□□□ -2.37
VPS13C-207ENST00000558919 C20orf78Q9BR46 151 aa0.24□□□□□ -2.37
VPS13C-207ENST00000558919 PRO3102Q9H379 93 aa0.24□□□□□ -2.37
VPS13C-207ENST00000558919 HIGD1BQ9P298 99 aa0.24□□□□□ -2.37
VPS13C-207ENST00000558919 COL7A1Q02388 2944 aa0.24□□□□□ -2.37
VPS13C-207ENST00000558919 MAP1AP78559 2803 aaPredicted RBP0.24□□□□□ -2.37
VPS13C-207ENST00000558919 SCN11AQ9UI33 1791 aa0.24□□□□□ -2.37
VPS13C-207ENST00000558919 RNF213Q63HN8 5207 aa0.24□□□□□ -2.37
VPS13C-207ENST00000558919 A0A0G2JMZ2 1700 aa0.24□□□□□ -2.37
VPS13C-207ENST00000558919 LY75O60449 1722 aa0.24□□□□□ -2.37
VPS13C-207ENST00000558919 LRRIQ1Q96JM4 1722 aa0.24□□□□□ -2.37
VPS13C-207ENST00000558919 NBASA2RRP1 2371 aa0.24□□□□□ -2.37
VPS13C-207ENST00000558919 CLTCQ00610 1675 aaKnown RBP0.24□□□□□ -2.37
VPS13C-207ENST00000558919 LAMC1P11047 1609 aa0.24□□□□□ -2.37
VPS13C-207ENST00000558919 MYO3AQ8NEV4 1616 aa0.24□□□□□ -2.37
VPS13C-207ENST00000558919 USH2AO75445 5202 aa0.23□□□□□ -2.37
VPS13C-207ENST00000558919 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP0.23□□□□□ -2.37
VPS13C-207ENST00000558919 NRXN1Q9ULB1 1477 aa0.23□□□□□ -2.37
VPS13C-207ENST00000558919 TROQ12816 1431 aaPredicted RBP0.23□□□□□ -2.37
VPS13C-207ENST00000558919 EEA1Q15075 1411 aa0.23□□□□□ -2.37
VPS13C-207ENST00000558919 SPTBN5Q9NRC6 3674 aaKnown RBP0.23□□□□□ -2.37
VPS13C-207ENST00000558919 PRUNE2Q8WUY3 3088 aa0.23□□□□□ -2.37
VPS13C-207ENST00000558919 ACANP16112 2415 aa0.23□□□□□ -2.37
VPS13C-207ENST00000558919 CACNA1HO95180 2353 aa0.23□□□□□ -2.37
VPS13C-207ENST00000558919 ZNF236Q9UL36 1845 aa0.23□□□□□ -2.37
VPS13C-207ENST00000558919 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.23□□□□□ -2.37
VPS13C-207ENST00000558919 CSPG4Q6UVK1 2322 aa0.23□□□□□ -2.37
VPS13C-207ENST00000558919 PVALEFA0A1B0GWK0 134 aa0.23□□□□□ -2.37
VPS13C-207ENST00000558919 K7EQZ3 153 aa0.23□□□□□ -2.37
VPS13C-207ENST00000558919 SPRR1AP35321 89 aa0.23□□□□□ -2.37
VPS13C-207ENST00000558919 GNG2P59768 71 aa0.23□□□□□ -2.37
VPS13C-207ENST00000558919 PYY3Q5JQD4 70 aa0.23□□□□□ -2.37
VPS13C-207ENST00000558919 PSENENQ9NZ42 101 aa0.23□□□□□ -2.37
VPS13C-207ENST00000558919 CENPFP49454 3210 aa0.23□□□□□ -2.37
VPS13C-207ENST00000558919 TIAM2Q8IVF5 1701 aa0.23□□□□□ -2.37
VPS13C-207ENST00000558919 IQGAP1P46940 1657 aa0.23□□□□□ -2.37
VPS13C-207ENST00000558919 USP34Q70CQ2 3546 aa0.23□□□□□ -2.37
VPS13C-207ENST00000558919 FRYLO94915 3013 aa0.23□□□□□ -2.37
VPS13C-207ENST00000558919 CLTCL1P53675 1640 aa0.23□□□□□ -2.37
VPS13C-207ENST00000558919 ABCA5Q8WWZ7 1642 aa0.23□□□□□ -2.37
VPS13C-207ENST00000558919 TIAM1Q13009 1591 aa0.23□□□□□ -2.37
VPS13C-207ENST00000558919 DCHS1Q96JQ0 3298 aa0.23□□□□□ -2.37
VPS13C-207ENST00000558919 ASXL1Q8IXJ9 1541 aa0.23□□□□□ -2.37
VPS13C-207ENST00000558919 EDC4Q6P2E9 1401 aaKnown RBP0.22□□□□□ -2.37
VPS13C-207ENST00000558919 LRP1Q07954 4544 aaKnown RBP0.22□□□□□ -2.37
VPS13C-207ENST00000558919 DCHS2Q6V1P9 2916 aa0.22□□□□□ -2.37
VPS13C-207ENST00000558919 GOLGB1Q14789 3259 aaKnown RBP0.22□□□□□ -2.37
VPS13C-207ENST00000558919 VPS13AQ96RL7 3174 aa0.22□□□□□ -2.37
VPS13C-207ENST00000558919 NHSQ6T4R5 1651 aa0.22□□□□□ -2.37
VPS13C-207ENST00000558919 ALS2Q96Q42 1657 aa0.22□□□□□ -2.37
VPS13C-207ENST00000558919 SPTBN2O15020 2390 aa0.22□□□□□ -2.37
VPS13C-207ENST00000558919 COX8AP10176 69 aa0.22□□□□□ -2.37
VPS13C-207ENST00000558919 DMXL1Q9Y485 3027 aa0.22□□□□□ -2.37
VPS13C-207ENST00000558919 EFCAB5A4FU69 1503 aa0.22□□□□□ -2.37
VPS13C-207ENST00000558919 MAP3K1Q13233 1512 aa0.22□□□□□ -2.37
VPS13C-207ENST00000558919 UGGT2Q9NYU1 1516 aa0.22□□□□□ -2.37
VPS13C-207ENST00000558919 ATP10BO94823 1461 aa0.22□□□□□ -2.37
VPS13C-207ENST00000558919 CCDC141Q6ZP82 1450 aa0.22□□□□□ -2.37
VPS13C-207ENST00000558919 QSER1Q2KHR3 1735 aa0.21□□□□□ -2.38
VPS13C-207ENST00000558919 CADP27708 2225 aa0.21□□□□□ -2.38
VPS13C-207ENST00000558919 COL12A1Q99715 3063 aa0.21□□□□□ -2.38
VPS13C-207ENST00000558919 K7EP34 96 aa0.21□□□□□ -2.38
VPS13C-207ENST00000558919 HMGN2P05204 90 aaKnown RBP0.21□□□□□ -2.38
VPS13C-207ENST00000558919 SPRR1BP22528 89 aa0.21□□□□□ -2.38
VPS13C-207ENST00000558919 S100A16Q96FQ6 103 aaKnown RBP0.21□□□□□ -2.38
VPS13C-207ENST00000558919 FXYD6Q9H0Q3 95 aa0.21□□□□□ -2.38
VPS13C-207ENST00000558919 CRIPTQ9P021 101 aa0.21□□□□□ -2.38
VPS13C-207ENST00000558919 CHD7Q9P2D1 2997 aa0.21□□□□□ -2.38
VPS13C-207ENST00000558919 BRCA2P51587 3418 aa0.21□□□□□ -2.38
VPS13C-207ENST00000558919 ACACAQ13085 2346 aa0.21□□□□□ -2.38
VPS13C-207ENST00000558919 PTPRQQ9UMZ3 2332 aa0.21□□□□□ -2.38
VPS13C-207ENST00000558919 AHCTF1Q8WYP5 2266 aa0.21□□□□□ -2.38
VPS13C-207ENST00000558919 LAMA3Q16787 3333 aa0.21□□□□□ -2.38
VPS13C-207ENST00000558919 LRRC37AA6NMS7 1700 aa0.21□□□□□ -2.38
VPS13C-207ENST00000558919 UBR1Q8IWV7 1749 aa0.21□□□□□ -2.38
VPS13C-207ENST00000558919 FMN2Q9NZ56 1722 aa0.21□□□□□ -2.38
VPS13C-207ENST00000558919 DMXL2Q8TDJ6 3036 aa0.21□□□□□ -2.38
VPS13C-207ENST00000558919 SYNE1Q8NF91 8797 aaKnown RBP0.21□□□□□ -2.38
VPS13C-207ENST00000558919 CENPEQ02224 2701 aa0.21□□□□□ -2.38
VPS13C-207ENST00000558919 ZZEF1O43149 2961 aa0.21□□□□□ -2.38
VPS13C-207ENST00000558919 ZFHX3Q15911 3703 aa0.21□□□□□ -2.38
VPS13C-207ENST00000558919 TACC2O95359 2948 aa0.2□□□□□ -2.38
VPS13C-207ENST00000558919 CHD9Q3L8U1 2897 aa0.2□□□□□ -2.38
VPS13C-207ENST00000558919 PLIN4Q96Q06 1357 aa0.2□□□□□ -2.38
VPS13C-207ENST00000558919 ADGRG4Q8IZF6 3080 aa0.2□□□□□ -2.38
VPS13C-207ENST00000558919 SAMD9LQ8IVG5 1584 aa0.2□□□□□ -2.38
VPS13C-207ENST00000558919 RGPD8O14715 1765 aaPredicted RBP0.2□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms