RNA–Protein interactions for RNA: ENST00000556498.1

TDP1-215, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 597 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-215ENST00000556498 MALRD1Q5VYJ5 2156 aa3.66□□□□□ -1.82
TDP1-215ENST00000556498 REV3LO60673 3130 aa3.66□□□□□ -1.82
TDP1-215ENST00000556498 IGKV2-24A0A0C4DH68 120 aa3.65□□□□□ -1.83
TDP1-215ENST00000556498 NBDYA0A0U1RRE5 68 aa3.65□□□□□ -1.83
TDP1-215ENST00000556498 LY6G6CO95867 125 aa3.65□□□□□ -1.83
TDP1-215ENST00000556498 APELAP0DMC3 54 aa3.65□□□□□ -1.83
TDP1-215ENST00000556498 MINOS1Q5TGZ0 78 aa3.65□□□□□ -1.83
TDP1-215ENST00000556498 KRTAP11-1Q8IUC1 163 aa3.65□□□□□ -1.83
TDP1-215ENST00000556498 C6orf48Q9UBA6 75 aa3.65□□□□□ -1.83
TDP1-215ENST00000556498 CADP27708 2225 aa3.64□□□□□ -1.83
TDP1-215ENST00000556498 FAM168BA1KXE4 195 aa3.64□□□□□ -1.83
TDP1-215ENST00000556498 EP300Q09472 2414 aaPredicted RBP3.63□□□□□ -1.83
TDP1-215ENST00000556498 A0A1W2PNN7 141 aa3.63□□□□□ -1.83
TDP1-215ENST00000556498 DEFB131AP59861 70 aa3.63□□□□□ -1.83
TDP1-215ENST00000556498 RPL37AP61513 92 aaKnown RBP3.63□□□□□ -1.83
TDP1-215ENST00000556498 PCOTHQ58A44 107 aa3.63□□□□□ -1.83
TDP1-215ENST00000556498 AHCTF1Q8WYP5 2266 aa3.63□□□□□ -1.83
TDP1-215ENST00000556498 MUC6Q6W4X9 2439 aa3.62□□□□□ -1.83
TDP1-215ENST00000556498 KMT2BQ9UMN6 2715 aaPredicted RBP3.62□□□□□ -1.83
TDP1-215ENST00000556498 SSBP3-AS1Q7Z2R9 100 aa3.62□□□□□ -1.83
TDP1-215ENST00000556498 C5orf56Q8N8D9 126 aa3.62□□□□□ -1.83
TDP1-215ENST00000556498 PRUNE2Q8WUY3 3088 aa3.62□□□□□ -1.83
TDP1-215ENST00000556498 PTPRZ1P23471 2315 aaPredicted RBP3.62□□□□□ -1.83
TDP1-215ENST00000556498 EYSQ5T1H1 3165 aa3.61□□□□□ -1.83
TDP1-215ENST00000556498 FAM186AA6NE01 2351 aa3.61□□□□□ -1.83
TDP1-215ENST00000556498 GVQW2A0A096LPI5 108 aaPredicted RBP3.61□□□□□ -1.83
TDP1-215ENST00000556498 A0A0G2JQZ4 141 aa3.61□□□□□ -1.83
TDP1-215ENST00000556498 KRTAP5-3Q6L8H2 238 aa3.61□□□□□ -1.83
TDP1-215ENST00000556498 BDP1A6H8Y1 2624 aa3.6□□□□□ -1.83
TDP1-215ENST00000556498 PSORS1C2Q9UIG4 136 aa3.6□□□□□ -1.83
TDP1-215ENST00000556498 GVINP1Q7Z2Y8 2422 aa3.6□□□□□ -1.83
TDP1-215ENST00000556498 COL6A3P12111 3177 aa3.59□□□□□ -1.83
TDP1-215ENST00000556498 Q8N377 158 aa3.59□□□□□ -1.83
TDP1-215ENST00000556498 RIF1Q5UIP0 2472 aaKnown RBP3.59□□□□□ -1.84
TDP1-215ENST00000556498 A8MTW9 85 aa3.58□□□□□ -1.84
TDP1-215ENST00000556498 MT3P25713 68 aa3.58□□□□□ -1.84
TDP1-215ENST00000556498 ZFHX2Q9C0A1 2572 aaPredicted RBP3.57□□□□□ -1.84
TDP1-215ENST00000556498 KRTAP1-1Q07627 177 aa3.57□□□□□ -1.84
TDP1-215ENST00000556498 DEFB116Q30KQ4 102 aa3.57□□□□□ -1.84
TDP1-215ENST00000556498 PRO2289Q9P1D8 64 aa3.57□□□□□ -1.84
TDP1-215ENST00000556498 CNOT1A5YKK6 2376 aaKnown RBP3.56□□□□□ -1.84
TDP1-215ENST00000556498 MED13LQ71F56 2210 aa3.56□□□□□ -1.84
TDP1-215ENST00000556498 URB1O60287 2271 aaKnown RBP3.55□□□□□ -1.84
TDP1-215ENST00000556498 USMG5Q96IX5 58 aa3.55□□□□□ -1.84
TDP1-215ENST00000556498 CEP250Q9BV73 2442 aa3.55□□□□□ -1.84
TDP1-215ENST00000556498 USP34Q70CQ2 3546 aa3.55□□□□□ -1.84
TDP1-215ENST00000556498 MUC3AQ02505 3323 aa3.55□□□□□ -1.84
TDP1-215ENST00000556498 VCANP13611 3396 aa3.54□□□□□ -1.84
TDP1-215ENST00000556498 DNAH14Q0VDD8 3507 aa3.54□□□□□ -1.84
TDP1-215ENST00000556498 H3BUA1 57 aa3.54□□□□□ -1.84
TDP1-215ENST00000556498 DEFB108BQ8NET1 73 aa3.54□□□□□ -1.84
TDP1-215ENST00000556498 KRTAP2-2Q9BYT5 123 aa3.54□□□□□ -1.84
TDP1-215ENST00000556498 PTPRQQ9UMZ3 2332 aa3.54□□□□□ -1.84
TDP1-215ENST00000556498 MMP24-AS1A0A0U1RRL7 71 aa3.53□□□□□ -1.84
TDP1-215ENST00000556498 COX6B2Q6YFQ2 88 aa3.53□□□□□ -1.84
TDP1-215ENST00000556498 SORL1Q92673 2214 aa3.52□□□□□ -1.85
TDP1-215ENST00000556498 APC2O95996 2303 aa3.52□□□□□ -1.85
TDP1-215ENST00000556498 MRPL34Q9BQ48 92 aaKnown RBP3.52□□□□□ -1.85
TDP1-215ENST00000556498 RHPN1-AS1Q9BWJ2 59 aa3.52□□□□□ -1.85
TDP1-215ENST00000556498 TRIOO75962 3097 aa3.52□□□□□ -1.85
TDP1-215ENST00000556498 ABCA4P78363 2273 aa3.51□□□□□ -1.85
TDP1-215ENST00000556498 CUL9Q8IWT3 2517 aa3.5□□□□□ -1.85
TDP1-215ENST00000556498 CNTRLQ7Z7A1 2325 aa3.5□□□□□ -1.85
TDP1-215ENST00000556498 RTTNQ86VV8 2226 aa3.5□□□□□ -1.85
TDP1-215ENST00000556498 GIG44P09565 113 aaPredicted RBP3.5□□□□□ -1.85
TDP1-215ENST00000556498 DEFB105AQ8NG35 78 aa3.5□□□□□ -1.85
TDP1-215ENST00000556498 CRIPTQ9P021 101 aa3.5□□□□□ -1.85
TDP1-215ENST00000556498 PIEZO1Q92508 2521 aa3.5□□□□□ -1.85
TDP1-215ENST00000556498 ACACAQ13085 2346 aa3.5□□□□□ -1.85
TDP1-215ENST00000556498 NAV3Q8IVL0 2385 aa3.49□□□□□ -1.85
TDP1-215ENST00000556498 SPINK13Q1W4C9 94 aa3.49□□□□□ -1.85
TDP1-215ENST00000556498 CLPSL2Q6UWE3 100 aa3.48□□□□□ -1.85
TDP1-215ENST00000556498 Q6ZRX8 168 aa3.48□□□□□ -1.85
TDP1-215ENST00000556498 CACNA1GO43497 2377 aa3.48□□□□□ -1.85
TDP1-215ENST00000556498 J3QKU1 62 aa3.47□□□□□ -1.85
TDP1-215ENST00000556498 ZNF292O60281 2723 aa3.46□□□□□ -1.86
TDP1-215ENST00000556498 LY6EQ16553 131 aa3.46□□□□□ -1.86
TDP1-215ENST00000556498 C14orf177Q52M58 125 aa3.46□□□□□ -1.86
TDP1-215ENST00000556498 MYO15AQ9UKN7 3530 aa3.46□□□□□ -1.86
TDP1-215ENST00000556498 G3V318 75 aa3.45□□□□□ -1.86
TDP1-215ENST00000556498 KRTAP10-9P60411 292 aa3.45□□□□□ -1.86
TDP1-215ENST00000556498 IGFL1Q6UW32 110 aa3.45□□□□□ -1.86
TDP1-215ENST00000556498 PLAC4Q8WY50 150 aa3.45□□□□□ -1.86
TDP1-215ENST00000556498 PLCE1Q9P212 2302 aa3.45□□□□□ -1.86
TDP1-215ENST00000556498 SPTBN2O15020 2390 aa3.45□□□□□ -1.86
TDP1-215ENST00000556498 NCOR2Q9Y618 2525 aa3.44□□□□□ -1.86
TDP1-215ENST00000556498 DMDP11532 3685 aa3.44□□□□□ -1.86
TDP1-215ENST00000556498 A0A1W2PPR1 153 aa3.44□□□□□ -1.86
TDP1-215ENST00000556498 DEFB1P60022 68 aa3.44□□□□□ -1.86
TDP1-215ENST00000556498 R4GN34 69 aa3.44□□□□□ -1.86
TDP1-215ENST00000556498 CACNA1AO00555 2505 aa3.43□□□□□ -1.86
TDP1-215ENST00000556498 UNQ6190/PRO20217Q6UXQ8 127 aa3.43□□□□□ -1.86
TDP1-215ENST00000556498 KRTAP7-1Q8IUC3 87 aa3.43□□□□□ -1.86
TDP1-215ENST00000556498 LAMA1P25391 3075 aa3.42□□□□□ -1.86
TDP1-215ENST00000556498 H0YAA0 97 aa3.42□□□□□ -1.86
TDP1-215ENST00000556498 SPRR1AP35321 89 aa3.42□□□□□ -1.86
TDP1-215ENST00000556498 TPRXLQ17RH7 258 aa3.42□□□□□ -1.86
TDP1-215ENST00000556498 WDFY4Q6ZS81 3184 aa3.42□□□□□ -1.86
TDP1-215ENST00000556498 A0A0C4DFX4 3053 aa3.41□□□□□ -1.86
TDP1-215ENST00000556498 INE1O15225 51 aa3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms