RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 SSBP1Q04837 148 aaKnown RBP2.46□□□□□ -2.02
PRPF39-209ENST00000556353 RPL7L1Q6DKI1 246 aaKnown RBP2.46□□□□□ -2.02
PRPF39-209ENST00000556353 DAND5Q8N907 189 aa2.46□□□□□ -2.02
PRPF39-209ENST00000556353 SND1-IT1Q9HBX3 110 aa2.46□□□□□ -2.02
PRPF39-209ENST00000556353 NDUFA4L2Q9NRX3 87 aa2.46□□□□□ -2.02
PRPF39-209ENST00000556353 HMCN2Q8NDA2 5059 aa2.45□□□□□ -2.02
PRPF39-209ENST00000556353 TRBV7-1A0A0A6YYK4 115 aa2.45□□□□□ -2.02
PRPF39-209ENST00000556353 NUPR2A6NF83 97 aa2.45□□□□□ -2.02
PRPF39-209ENST00000556353 LEPROTO15243 131 aa2.45□□□□□ -2.02
PRPF39-209ENST00000556353 RNASE2P10153 161 aaKnown RBP2.45□□□□□ -2.02
PRPF39-209ENST00000556353 NPPCP23582 126 aa2.45□□□□□ -2.02
PRPF39-209ENST00000556353 REG3AQ06141 175 aa2.45□□□□□ -2.02
PRPF39-209ENST00000556353 KLKP1Q107X0 134 aa2.45□□□□□ -2.02
PRPF39-209ENST00000556353 RHOHQ15669 191 aa2.45□□□□□ -2.02
PRPF39-209ENST00000556353 SPINK9Q5DT21 86 aa2.45□□□□□ -2.02
PRPF39-209ENST00000556353 CEMP1Q6PRD7 247 aaPredicted RBP2.45□□□□□ -2.02
PRPF39-209ENST00000556353 KRTAP13-1Q8IUC0 172 aa2.45□□□□□ -2.02
PRPF39-209ENST00000556353 Q8NAQ8 132 aa2.45□□□□□ -2.02
PRPF39-209ENST00000556353 PPP1R1CQ8WVI7 109 aa2.45□□□□□ -2.02
PRPF39-209ENST00000556353 SCGB3A1Q96QR1 104 aa2.45□□□□□ -2.02
PRPF39-209ENST00000556353 SLC50A1Q9BRV3 221 aa2.45□□□□□ -2.02
PRPF39-209ENST00000556353 TMEM14BQ9NUH8 114 aa2.45□□□□□ -2.02
PRPF39-209ENST00000556353 UBR4Q5T4S7 5183 aa2.45□□□□□ -2.02
PRPF39-209ENST00000556353 IGHV3-66A0A0C4DH42 116 aa2.44□□□□□ -2.02
PRPF39-209ENST00000556353 IGHV7-4-1A0A0J9YVY3 117 aa2.44□□□□□ -2.02
PRPF39-209ENST00000556353 H7BZZ5 65 aa2.44□□□□□ -2.02
PRPF39-209ENST00000556353 NDUFA4O00483 81 aa2.44□□□□□ -2.02
PRPF39-209ENST00000556353 NPYP01303 97 aa2.44□□□□□ -2.02
PRPF39-209ENST00000556353 DEFA4P12838 97 aa2.44□□□□□ -2.02
PRPF39-209ENST00000556353 UBE2D3P61077 147 aa2.44□□□□□ -2.02
PRPF39-209ENST00000556353 UBE2D2P62837 147 aa2.44□□□□□ -2.02
PRPF39-209ENST00000556353 MRPL51Q4U2R6 128 aaKnown RBP2.44□□□□□ -2.02
PRPF39-209ENST00000556353 SPANXN1Q5VSR9 72 aa2.44□□□□□ -2.02
PRPF39-209ENST00000556353 SOSTDC1Q6X4U4 206 aa2.44□□□□□ -2.02
PRPF39-209ENST00000556353 CLEC2BQ92478 149 aa2.44□□□□□ -2.02
PRPF39-209ENST00000556353 RHPN1-AS1Q9BWJ2 59 aa2.44□□□□□ -2.02
PRPF39-209ENST00000556353 APLNQ9ULZ1 77 aa2.44□□□□□ -2.02
PRPF39-209ENST00000556353 ARL2-SNX15V9GYD0 113 aa2.44□□□□□ -2.02
PRPF39-209ENST00000556353 IGKV3-7A0A075B6H7 116 aa2.43□□□□□ -2.02
PRPF39-209ENST00000556353 CRYM-AS1A6NIL9 109 aa2.43□□□□□ -2.02
PRPF39-209ENST00000556353 GNRH2O43555 120 aa2.43□□□□□ -2.02
PRPF39-209ENST00000556353 IGKV4-1P06312 121 aa2.43□□□□□ -2.02
PRPF39-209ENST00000556353 GCHFRP30047 84 aa2.43□□□□□ -2.02
PRPF39-209ENST00000556353 FXYD7P58549 80 aa2.43□□□□□ -2.02
PRPF39-209ENST00000556353 DEFB1P60022 68 aa2.43□□□□□ -2.02
PRPF39-209ENST00000556353 RBM3P98179 157 aaKnown RBP2.43□□□□□ -2.02
PRPF39-209ENST00000556353 PRCDQ00LT1 54 aa2.43□□□□□ -2.02
PRPF39-209ENST00000556353 ZNF56Q15929 161 aa2.43□□□□□ -2.02
PRPF39-209ENST00000556353 ESRGQ1W209 222 aa2.43□□□□□ -2.02
PRPF39-209ENST00000556353 KRTAP21-2Q3LI59 83 aa2.43□□□□□ -2.02
PRPF39-209ENST00000556353 KRTAP13-2Q52LG2 175 aa2.43□□□□□ -2.02
PRPF39-209ENST00000556353 LYPD5Q6UWN5 251 aa2.43□□□□□ -2.02
PRPF39-209ENST00000556353 ORMDL3Q8N138 153 aa2.43□□□□□ -2.02
PRPF39-209ENST00000556353 IFI27L1Q96BM0 104 aa2.43□□□□□ -2.02
PRPF39-209ENST00000556353 CAMK2N2Q96S95 79 aa2.43□□□□□ -2.02
PRPF39-209ENST00000556353 CYP4F30PQ9H0H9 118 aa2.43□□□□□ -2.02
PRPF39-209ENST00000556353 CYSTM1Q9H1C7 97 aa2.43□□□□□ -2.02
PRPF39-209ENST00000556353 TNXBP22105 4242 aa2.42□□□□□ -2.02
PRPF39-209ENST00000556353 MYMXA0A1B0GTQ4 84 aa2.42□□□□□ -2.02
PRPF39-209ENST00000556353 IL4P05112 153 aa2.42□□□□□ -2.02
PRPF39-209ENST00000556353 IGHV3-30-3P0DP02 117 aa2.42□□□□□ -2.02
PRPF39-209ENST00000556353 XCL1P47992 114 aa2.42□□□□□ -2.02
PRPF39-209ENST00000556353 TSPEAR-AS2P59090 65 aa2.42□□□□□ -2.02
PRPF39-209ENST00000556353 DEFB131AP59861 70 aa2.42□□□□□ -2.02
PRPF39-209ENST00000556353 GDF5OSQ5U4N7 250 aa2.42□□□□□ -2.02
PRPF39-209ENST00000556353 ZFAND2AQ8N6M9 145 aa2.42□□□□□ -2.02
PRPF39-209ENST00000556353 CHCHD1Q96BP2 118 aaKnown RBP2.42□□□□□ -2.02
PRPF39-209ENST00000556353 TMEM141Q96I45 108 aa2.42□□□□□ -2.02
PRPF39-209ENST00000556353 LINC00467Q9BRT7 94 aa2.42□□□□□ -2.02
PRPF39-209ENST00000556353 TIMM21Q9BVV7 248 aa2.42□□□□□ -2.02
PRPF39-209ENST00000556353 LINC00474Q9P2X8 69 aa2.42□□□□□ -2.02
PRPF39-209ENST00000556353 TRBV7-3A0A075B6L6 115 aa2.41□□□□□ -2.02
PRPF39-209ENST00000556353 C19orf71A6NCJ1 209 aa2.41□□□□□ -2.02
PRPF39-209ENST00000556353 SLC25A20O43772 301 aa2.41□□□□□ -2.02
PRPF39-209ENST00000556353 LINC00269Q8N2A0 174 aa2.41□□□□□ -2.02
PRPF39-209ENST00000556353 C11orf1Q9H5F2 150 aa2.41□□□□□ -2.02
PRPF39-209ENST00000556353 NHP2Q9NX24 153 aaKnown RBP2.41□□□□□ -2.02
PRPF39-209ENST00000556353 IGLV1-50A0A075B6I6 118 aa2.4□□□□□ -2.03
PRPF39-209ENST00000556353 IGKV1D-37A0A075B6S9 117 aa2.4□□□□□ -2.03
PRPF39-209ENST00000556353 IGKV1OR2-108A0A075B7D4 117 aa2.4□□□□□ -2.03
PRPF39-209ENST00000556353 A0A0B4J2C4 111 aa2.4□□□□□ -2.03
PRPF39-209ENST00000556353 H3BMM0 161 aa2.4□□□□□ -2.03
PRPF39-209ENST00000556353 SYCNQ0VAF6 134 aa2.4□□□□□ -2.03
PRPF39-209ENST00000556353 UBE2WQ96B02 151 aa2.4□□□□□ -2.03
PRPF39-209ENST00000556353 NDUFA12Q9UI09 145 aa2.4□□□□□ -2.03
PRPF39-209ENST00000556353 TRAV7A0A075B6U4 112 aa2.39□□□□□ -2.03
PRPF39-209ENST00000556353 M0R2N4 97 aa2.39□□□□□ -2.03
PRPF39-209ENST00000556353 PRB4P10163 310 aaPredicted RBP2.39□□□□□ -2.03
PRPF39-209ENST00000556353 FXYD2P54710 66 aa2.39□□□□□ -2.03
PRPF39-209ENST00000556353 SUPT4H1P63272 117 aaKnown RBP2.39□□□□□ -2.03
PRPF39-209ENST00000556353 FAM167A-AS1Q96KT0 104 aa2.39□□□□□ -2.03
PRPF39-209ENST00000556353 PHLDA3Q9Y5J5 127 aa2.39□□□□□ -2.03
PRPF39-209ENST00000556353 DEFB131BA0A096LNP1 70 aa2.38□□□□□ -2.03
PRPF39-209ENST00000556353 TRAV10A0A0B4J240 114 aa2.38□□□□□ -2.03
PRPF39-209ENST00000556353 TRBV10-2A0A0K0K1G8 114 aa2.38□□□□□ -2.03
PRPF39-209ENST00000556353 A8MTW9 85 aa2.38□□□□□ -2.03
PRPF39-209ENST00000556353 K7ERS5 55 aa2.38□□□□□ -2.03
PRPF39-209ENST00000556353 ERC2-IT1O76042 136 aa2.38□□□□□ -2.03
PRPF39-209ENST00000556353 MIFP14174 115 aa2.38□□□□□ -2.03
PRPF39-209ENST00000556353 ERHP84090 104 aaKnown RBP2.38□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms