RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 RELNP78509 3460 aa-0.74□□□□□ -2.53
SCFD1-218ENST00000556256 FAM135AQ9P2D6 1515 aa-0.74□□□□□ -2.53
SCFD1-218ENST00000556256 C4AP0C0L4 1744 aa-0.75□□□□□ -2.53
SCFD1-218ENST00000556256 C4BP0C0L5 1744 aa-0.75□□□□□ -2.53
SCFD1-218ENST00000556256 MGAM2Q2M2H8 2515 aa-0.75□□□□□ -2.53
SCFD1-218ENST00000556256 UTP20O75691 2785 aaKnown RBP-0.75□□□□□ -2.53
SCFD1-218ENST00000556256 WDR87Q6ZQQ6 2873 aa-0.75□□□□□ -2.53
SCFD1-218ENST00000556256 TRBV7-7A0A0K0K1E9 115 aa-0.75□□□□□ -2.53
SCFD1-218ENST00000556256 SPTY2D1-AS1A0A0U1RR47 76 aa-0.75□□□□□ -2.53
SCFD1-218ENST00000556256 H3BNG1 76 aa-0.75□□□□□ -2.53
SCFD1-218ENST00000556256 VAMP8Q9BV40 100 aa-0.75□□□□□ -2.53
SCFD1-218ENST00000556256 LAMA2P24043 3122 aaKnown RBP-0.75□□□□□ -2.53
SCFD1-218ENST00000556256 QSER1Q2KHR3 1735 aa-0.75□□□□□ -2.53
SCFD1-218ENST00000556256 CRYBG1Q9Y4K1 1723 aa-0.75□□□□□ -2.53
SCFD1-218ENST00000556256 TRBV25-1A0A075B6N4 114 aa-0.76□□□□□ -2.53
SCFD1-218ENST00000556256 H7BZZ5 65 aa-0.76□□□□□ -2.53
SCFD1-218ENST00000556256 CCL22O00626 93 aa-0.76□□□□□ -2.53
SCFD1-218ENST00000556256 PSMG4Q5JS54 123 aa-0.76□□□□□ -2.53
SCFD1-218ENST00000556256 NRXN1Q9ULB1 1477 aa-0.76□□□□□ -2.53
SCFD1-218ENST00000556256 SAMD9Q5K651 1589 aa-0.76□□□□□ -2.53
SCFD1-218ENST00000556256 PKD1L3Q7Z443 1732 aa-0.76□□□□□ -2.53
SCFD1-218ENST00000556256 SCN11AQ9UI33 1791 aa-0.76□□□□□ -2.53
SCFD1-218ENST00000556256 TEX15Q9BXT5 2789 aa-0.76□□□□□ -2.53
SCFD1-218ENST00000556256 NIPBLQ6KC79 2804 aaeCLIP-0.77□□□□□ -2.53
SCFD1-218ENST00000556256 ZFYVE16Q7Z3T8 1539 aa-0.77□□□□□ -2.53
SCFD1-218ENST00000556256 CLIP1P30622 1438 aa-0.77□□□□□ -2.53
SCFD1-218ENST00000556256 TRGV9Q99603 122 aa-0.77□□□□□ -2.53
SCFD1-218ENST00000556256 LAMA3Q16787 3333 aa-0.77□□□□□ -2.53
SCFD1-218ENST00000556256 CMYA5Q8N3K9 4069 aa-0.77□□□□□ -2.53
SCFD1-218ENST00000556256 PRDM15P57071 1507 aaPredicted RBP-0.78□□□□□ -2.53
SCFD1-218ENST00000556256 MLH3Q9UHC1 1453 aa-0.78□□□□□ -2.53
SCFD1-218ENST00000556256 TRIOO75962 3097 aa-0.78□□□□□ -2.53
SCFD1-218ENST00000556256 C20orf202A1L168 122 aa-0.78□□□□□ -2.53
SCFD1-218ENST00000556256 GNGT2O14610 69 aa-0.78□□□□□ -2.53
SCFD1-218ENST00000556256 NDUFC1O43677 76 aa-0.78□□□□□ -2.53
SCFD1-218ENST00000556256 NDUFA3O95167 84 aa-0.78□□□□□ -2.53
SCFD1-218ENST00000556256 IGLC2P0DOY2 106 aa-0.78□□□□□ -2.53
SCFD1-218ENST00000556256 IGLC3P0DOY3 106 aa-0.78□□□□□ -2.53
SCFD1-218ENST00000556256 PMCHL1Q16048 86 aa-0.78□□□□□ -2.53
SCFD1-218ENST00000556256 PSENENQ9NZ42 101 aa-0.78□□□□□ -2.53
SCFD1-218ENST00000556256 CEP290O15078 2479 aa-0.78□□□□□ -2.53
SCFD1-218ENST00000556256 RGPD1P0DJD0 1748 aa-0.78□□□□□ -2.53
SCFD1-218ENST00000556256 COL12A1Q99715 3063 aa-0.78□□□□□ -2.53
SCFD1-218ENST00000556256 PREX1Q8TCU6 1659 aa-0.79□□□□□ -2.54
SCFD1-218ENST00000556256 ACACBO00763 2458 aa-0.79□□□□□ -2.54
SCFD1-218ENST00000556256 USP9XQ93008 2570 aaPredicted RBP-0.8□□□□□ -2.54
SCFD1-218ENST00000556256 MT-ATP8P03928 68 aa-0.8□□□□□ -2.54
SCFD1-218ENST00000556256 UQCRHP07919 91 aa-0.8□□□□□ -2.54
SCFD1-218ENST00000556256 RGPD3A6NKT7 1758 aaPredicted RBP-0.8□□□□□ -2.54
SCFD1-218ENST00000556256 RGPD4Q7Z3J3 1758 aa-0.8□□□□□ -2.54
SCFD1-218ENST00000556256 RANBP2P49792 3224 aaKnown RBP-0.81□□□□□ -2.54
SCFD1-218ENST00000556256 DYNC1H1Q14204 4646 aaKnown RBP-0.81□□□□□ -2.54
SCFD1-218ENST00000556256 F8WEM9 126 aa-0.81□□□□□ -2.54
SCFD1-218ENST00000556256 PMCHL2Q9BQD1 86 aa-0.81□□□□□ -2.54
SCFD1-218ENST00000556256 SPTBN5Q9NRC6 3674 aaKnown RBP-0.81□□□□□ -2.54
SCFD1-218ENST00000556256 MAGI2Q86UL8 1455 aa-0.81□□□□□ -2.54
SCFD1-218ENST00000556256 RAPGEF2Q9Y4G8 1499 aa-0.81□□□□□ -2.54
SCFD1-218ENST00000556256 ANKRD36BQ8N2N9 1353 aa-0.82□□□□□ -2.54
SCFD1-218ENST00000556256 SRCAPQ6ZRS2 3230 aa-0.82□□□□□ -2.54
SCFD1-218ENST00000556256 RGPD8O14715 1765 aaPredicted RBP-0.82□□□□□ -2.54
SCFD1-218ENST00000556256 RGPD5Q99666 1765 aa-0.82□□□□□ -2.54
SCFD1-218ENST00000556256 TMEM218A2RU14 115 aa-0.82□□□□□ -2.54
SCFD1-218ENST00000556256 D6R8Y8 96 aa-0.82□□□□□ -2.54
SCFD1-218ENST00000556256 LEPROTL1O95214 131 aa-0.82□□□□□ -2.54
SCFD1-218ENST00000556256 MPC2O95563 127 aa-0.82□□□□□ -2.54
SCFD1-218ENST00000556256 COX7BP24311 80 aa-0.82□□□□□ -2.54
SCFD1-218ENST00000556256 MUSTN1Q8IVN3 82 aa-0.82□□□□□ -2.54
SCFD1-218ENST00000556256 AP4S1Q9Y587 144 aa-0.82□□□□□ -2.54
SCFD1-218ENST00000556256 SUPT6HQ7KZ85 1726 aaKnown RBP-0.82□□□□□ -2.54
SCFD1-218ENST00000556256 TNRC6CQ9HCJ0 1690 aaKnown RBP-0.82□□□□□ -2.54
SCFD1-218ENST00000556256 SPENQ96T58 3664 aaKnown RBP-0.82□□□□□ -2.54
SCFD1-218ENST00000556256 TIAM2Q8IVF5 1701 aa-0.83□□□□□ -2.54
SCFD1-218ENST00000556256 UBR1Q8IWV7 1749 aa-0.83□□□□□ -2.54
SCFD1-218ENST00000556256 CLTCQ00610 1675 aaKnown RBP-0.83□□□□□ -2.54
SCFD1-218ENST00000556256 C9orf92A6NGG3 77 aa-0.83□□□□□ -2.54
SCFD1-218ENST00000556256 ETDBQ3ZM63 59 aa-0.83□□□□□ -2.54
SCFD1-218ENST00000556256 NMSQ5H8A3 153 aa-0.83□□□□□ -2.54
SCFD1-218ENST00000556256 SERP2Q8N6R1 65 aa-0.83□□□□□ -2.54
SCFD1-218ENST00000556256 DYNC2H1Q8NCM8 4307 aaKnown RBP-0.83□□□□□ -2.54
SCFD1-218ENST00000556256 ABCC2Q92887 1545 aa-0.84□□□□□ -2.54
SCFD1-218ENST00000556256 C14orf144Q96I85 54 aa-0.84□□□□□ -2.54
SCFD1-218ENST00000556256 UBE2D4Q9Y2X8 147 aa-0.84□□□□□ -2.54
SCFD1-218ENST00000556256 DNAH7Q8WXX0 4024 aa-0.84□□□□□ -2.54
SCFD1-218ENST00000556256 C5orf42Q9H799 3197 aa-0.84□□□□□ -2.54
SCFD1-218ENST00000556256 FRYQ5TBA9 3013 aa-0.85□□□□□ -2.55
SCFD1-218ENST00000556256 ALKQ9UM73 1620 aa-0.85□□□□□ -2.55
SCFD1-218ENST00000556256 LTN1O94822 1766 aa-0.85□□□□□ -2.55
SCFD1-218ENST00000556256 ATOX1O00244 68 aa-0.85□□□□□ -2.55
SCFD1-218ENST00000556256 POLR1AO95602 1720 aaPredicted RBP-0.85□□□□□ -2.55
SCFD1-218ENST00000556256 S100PP25815 95 aa-0.85□□□□□ -2.55
SCFD1-218ENST00000556256 S100A10P60903 97 aa-0.85□□□□□ -2.55
SCFD1-218ENST00000556256 HMGN3Q15651 99 aa-0.85□□□□□ -2.55
SCFD1-218ENST00000556256 ALKAL2Q6UX46 152 aa-0.85□□□□□ -2.55
SCFD1-218ENST00000556256 DOT1LQ8TEK3 1739 aa-0.85□□□□□ -2.55
SCFD1-218ENST00000556256 ANKRD50Q9ULJ7 1429 aa-0.85□□□□□ -2.55
SCFD1-218ENST00000556256 BPTFQ12830 3046 aa-0.85□□□□□ -2.55
SCFD1-218ENST00000556256 LRRC7Q96NW7 1537 aa-0.85□□□□□ -2.55
SCFD1-218ENST00000556256 TLN2Q9Y4G6 2542 aa-0.86□□□□□ -2.55
SCFD1-218ENST00000556256 FAUP35544 74 aaKnown RBP-0.86□□□□□ -2.55
SCFD1-218ENST00000556256 COL5A1-AS1Q5SY13 56 aa-0.86□□□□□ -2.55
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms