RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 ST20-AS1Q8NBB2 130 aa9.08□□□□□ -0.96
VPS29-204ENST00000548259 IFI27L1Q96BM0 104 aa9.08□□□□□ -0.96
VPS29-204ENST00000548259 LAMTOR3Q9UHA4 124 aa9.08□□□□□ -0.96
VPS29-204ENST00000548259 NDUFC2O95298 119 aa9.07□□□□□ -0.96
VPS29-204ENST00000548259 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.04□□□□□ -0.96
VPS29-204ENST00000548259 CD164Q04900 197 aa9.04□□□□□ -0.96
VPS29-204ENST00000548259 SPRR1BP22528 89 aa9.03□□□□□ -0.96
VPS29-204ENST00000548259 CLLU1Q5K131 121 aa9.03□□□□□ -0.96
VPS29-204ENST00000548259 RPL37P61927 97 aaKnown RBP9.02□□□□□ -0.97
VPS29-204ENST00000548259 RHEBQ15382 184 aa9.02□□□□□ -0.97
VPS29-204ENST00000548259 DHRS4-AS1Q9P1J3 65 aa9.02□□□□□ -0.97
VPS29-204ENST00000548259 LEPROTO15243 131 aa9.01□□□□□ -0.97
VPS29-204ENST00000548259 CHCHD1Q96BP2 118 aaKnown RBP9.01□□□□□ -0.97
VPS29-204ENST00000548259 PRO1933Q9H354 126 aa9.01□□□□□ -0.97
VPS29-204ENST00000548259 RPS10P5Q9NQ39 176 aa9.01□□□□□ -0.97
VPS29-204ENST00000548259 H7C2G1 150 aa9□□□□□ -0.97
VPS29-204ENST00000548259 NMUP48645 174 aa9□□□□□ -0.97
VPS29-204ENST00000548259 HERVK_113P61574 105 aa8.98□□□□□ -0.97
VPS29-204ENST00000548259 J3QQQ9 107 aa8.97□□□□□ -0.97
VPS29-204ENST00000548259 LGALS3P17931 250 aaKnown RBP8.97□□□□□ -0.97
VPS29-204ENST00000548259 Q5XG85 94 aa8.97□□□□□ -0.97
VPS29-204ENST00000548259 H0Y8G0 127 aa8.96□□□□□ -0.98
VPS29-204ENST00000548259 PLNP26678 52 aa8.96□□□□□ -0.98
VPS29-204ENST00000548259 TSPEAR-AS2P59090 65 aa8.96□□□□□ -0.98
VPS29-204ENST00000548259 TAL2Q16559 108 aa8.96□□□□□ -0.98
VPS29-204ENST00000548259 CFC1P0CG37 223 aa8.95□□□□□ -0.98
VPS29-204ENST00000548259 AKR1D1P51857 326 aa8.95□□□□□ -0.98
VPS29-204ENST00000548259 C1orf195Q5TG92 126 aa8.94□□□□□ -0.98
VPS29-204ENST00000548259 OR13C6PQ8NH95 151 aa8.94□□□□□ -0.98
VPS29-204ENST00000548259 FLGP20930 4061 aaPredicted RBP8.94□□□□□ -0.98
VPS29-204ENST00000548259 HSBP1O75506 76 aa8.93□□□□□ -0.98
VPS29-204ENST00000548259 Q1RN00 199 aa8.93□□□□□ -0.98
VPS29-204ENST00000548259 Q6Q795 121 aa8.93□□□□□ -0.98
VPS29-204ENST00000548259 NPC2P61916 151 aa8.92□□□□□ -0.98
VPS29-204ENST00000548259 DEFB105AQ8NG35 78 aa8.92□□□□□ -0.98
VPS29-204ENST00000548259 TEX49A0A1B0GTD5 131 aa8.91□□□□□ -0.98
VPS29-204ENST00000548259 COX7BP24311 80 aa8.9□□□□□ -0.98
VPS29-204ENST00000548259 TCL1BO95988 128 aa8.89□□□□□ -0.99
VPS29-204ENST00000548259 SOSTDC1Q6X4U4 206 aa8.89□□□□□ -0.99
VPS29-204ENST00000548259 SPANXCQ9NY87 97 aa8.89□□□□□ -0.99
VPS29-204ENST00000548259 DPM2O94777 84 aa8.88□□□□□ -0.99
VPS29-204ENST00000548259 SMIM29Q86T20 159 aa8.88□□□□□ -0.99
VPS29-204ENST00000548259 LEPROTL1O95214 131 aa8.87□□□□□ -0.99
VPS29-204ENST00000548259 ELOF1P60002 83 aaKnown RBP8.87□□□□□ -0.99
VPS29-204ENST00000548259 C10orf91Q5T1B1 145 aa8.87□□□□□ -0.99
VPS29-204ENST00000548259 SPANXDQ9BXN6 97 aa8.87□□□□□ -0.99
VPS29-204ENST00000548259 A0A0J9YXY3 114 aa8.86□□□□□ -0.99
VPS29-204ENST00000548259 ATP11AUNQ6ZP68 121 aa8.86□□□□□ -0.99
VPS29-204ENST00000548259 ADAMTSL4-AS1Q5T5F5 129 aa8.85□□□□□ -0.99
VPS29-204ENST00000548259 EIF4EBP3O60516 100 aaPredicted RBP8.84□□□□□ -0.99
VPS29-204ENST00000548259 IGKCP01834 107 aa8.84□□□□□ -0.99
VPS29-204ENST00000548259 HSPB8Q9UJY1 196 aa8.84□□□□□ -0.99
VPS29-204ENST00000548259 C6orf99Q4VX62 202 aa8.83□□□□□ -1
VPS29-204ENST00000548259 LINC00518Q8N0U6 118 aa8.83□□□□□ -1
VPS29-204ENST00000548259 LINC00308Q8TCZ7 52 aa8.82□□□□□ -1
VPS29-204ENST00000548259 TRBV7-6A0A0J9YX20 115 aa8.79□□□□□ -1
VPS29-204ENST00000548259 C20orf202A1L168 122 aa8.78□□□□□ -1
VPS29-204ENST00000548259 E9PLD3 99 aa8.78□□□□□ -1
VPS29-204ENST00000548259 SNAPINO95295 136 aa8.78□□□□□ -1
VPS29-204ENST00000548259 NDUFA5Q16718 116 aa8.78□□□□□ -1
VPS29-204ENST00000548259 PCP2Q8IVA1 136 aa8.78□□□□□ -1
VPS29-204ENST00000548259 PMCHL2Q9BQD1 86 aa8.78□□□□□ -1
VPS29-204ENST00000548259 TIMM17BO60830 172 aa8.77□□□□□ -1.01
VPS29-204ENST00000548259 IGLV5-48A0A075B6I7 105 aa8.76□□□□□ -1.01
VPS29-204ENST00000548259 A0A1B0GWB2 263 aa8.76□□□□□ -1.01
VPS29-204ENST00000548259 APOC3P02656 99 aa8.76□□□□□ -1.01
VPS29-204ENST00000548259 Q75L30 129 aa8.76□□□□□ -1.01
VPS29-204ENST00000548259 SVBPQ8N300 66 aa8.76□□□□□ -1.01
VPS29-204ENST00000548259 A0A0G2JQZ4 141 aa8.75□□□□□ -1.01
VPS29-204ENST00000548259 F8WEM9 126 aa8.75□□□□□ -1.01
VPS29-204ENST00000548259 FABP4P15090 132 aa8.75□□□□□ -1.01
VPS29-204ENST00000548259 SSPOA2VEC9 5147 aa8.74□□□□□ -1.01
VPS29-204ENST00000548259 TRBV20-1A0A075B6N2 111 aa8.74□□□□□ -1.01
VPS29-204ENST00000548259 KRTAP9-8Q9BYQ0 159 aa8.74□□□□□ -1.01
VPS29-204ENST00000548259 NHP2Q9NX24 153 aaKnown RBP8.74□□□□□ -1.01
VPS29-204ENST00000548259 USH2AO75445 5202 aa8.73□□□□□ -1.01
VPS29-204ENST00000548259 SERF1AO75920 110 aa8.73□□□□□ -1.01
VPS29-204ENST00000548259 OBSCN-AS1Q96MR7 158 aa8.73□□□□□ -1.01
VPS29-204ENST00000548259 A4D1N5 150 aa8.72□□□□□ -1.01
VPS29-204ENST00000548259 LITAFQ99732 161 aa8.72□□□□□ -1.01
VPS29-204ENST00000548259 COPS9Q8WXC6 57 aa8.71□□□□□ -1.02
VPS29-204ENST00000548259 ZNF815PA8K554 130 aa8.68□□□□□ -1.02
VPS29-204ENST00000548259 YPEL4Q96NS1 127 aa8.68□□□□□ -1.02
VPS29-204ENST00000548259 FCGBPQ9Y6R7 5405 aaPredicted RBP8.67□□□□□ -1.02
VPS29-204ENST00000548259 A6NDN8 102 aa8.67□□□□□ -1.02
VPS29-204ENST00000548259 Q6JHZ5 121 aa8.66□□□□□ -1.02
VPS29-204ENST00000548259 TRGC2P03986 189 aa8.65□□□□□ -1.02
VPS29-204ENST00000548259 LINC00846Q9NV44 126 aa8.65□□□□□ -1.02
VPS29-204ENST00000548259 LINC00310P59036 64 aa8.64□□□□□ -1.03
VPS29-204ENST00000548259 KRTAP19-1Q8IUB9 90 aa8.64□□□□□ -1.03
VPS29-204ENST00000548259 Q96NJ1 140 aa8.64□□□□□ -1.03
VPS29-204ENST00000548259 TRBV7-7A0A0K0K1E9 115 aa8.63□□□□□ -1.03
VPS29-204ENST00000548259 CLEC2BQ92478 149 aa8.63□□□□□ -1.03
VPS29-204ENST00000548259 TRAV13-2A0A0B4J235 113 aa8.61□□□□□ -1.03
VPS29-204ENST00000548259 SCGB1D4Q6XE38 83 aa8.61□□□□□ -1.03
VPS29-204ENST00000548259 SLC7A5P1Q8MH63 180 aa8.61□□□□□ -1.03
VPS29-204ENST00000548259 IFITM1P13164 125 aa8.6□□□□□ -1.03
VPS29-204ENST00000548259 LST1O00453 97 aa8.59□□□□□ -1.03
VPS29-204ENST00000548259 VAMP3Q15836 100 aa8.59□□□□□ -1.03
VPS29-204ENST00000548259 MACF1Q9UPN3 7388 aaKnown RBP8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms