RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 COX6CP09669 75 aa4.35□□□□□ -1.71
YBX3-209ENST00000540747 RPL18AQ02543 176 aaKnown RBP4.35□□□□□ -1.71
YBX3-209ENST00000540747 COPS9Q8WXC6 57 aa4.35□□□□□ -1.71
YBX3-209ENST00000540747 SPANXDQ9BXN6 97 aa4.35□□□□□ -1.71
YBX3-209ENST00000540747 SPANXCQ9NY87 97 aa4.35□□□□□ -1.71
YBX3-209ENST00000540747 F8WDY8 70 aa4.34□□□□□ -1.71
YBX3-209ENST00000540747 MALP21145 153 aa4.34□□□□□ -1.71
YBX3-209ENST00000540747 SPAG11BQ08648 103 aa4.34□□□□□ -1.71
YBX3-209ENST00000540747 ATXN8Q156A1 80 aa4.34□□□□□ -1.71
YBX3-209ENST00000540747 PRR4Q16378 134 aa4.34□□□□□ -1.71
YBX3-209ENST00000540747 C10orf25Q5T742 122 aa4.34□□□□□ -1.71
YBX3-209ENST00000540747 C5orf38Q86SI9 138 aa4.34□□□□□ -1.71
YBX3-209ENST00000540747 MTURNQ8N3F0 131 aa4.34□□□□□ -1.71
YBX3-209ENST00000540747 PPDPFLQ8WWR9 84 aa4.34□□□□□ -1.71
YBX3-209ENST00000540747 CDKN2A-AS1Q9UH64 79 aa4.34□□□□□ -1.71
YBX3-209ENST00000540747 IGLV5-45A0A087WSX0 123 aa4.33□□□□□ -1.72
YBX3-209ENST00000540747 A0A087WZ39 114 aa4.33□□□□□ -1.72
YBX3-209ENST00000540747 TRAV13-1A0A0B4J241 112 aa4.33□□□□□ -1.72
YBX3-209ENST00000540747 IGHV3OR16-9A0A0B4J2B5 98 aa4.33□□□□□ -1.72
YBX3-209ENST00000540747 NDUFA1O15239 70 aa4.33□□□□□ -1.72
YBX3-209ENST00000540747 RPL13AP40429 203 aaKnown RBP4.33□□□□□ -1.72
YBX3-209ENST00000540747 FAM19A3Q7Z5A8 133 aa4.33□□□□□ -1.72
YBX3-209ENST00000540747 C6orf48Q9UBA6 75 aa4.33□□□□□ -1.72
YBX3-209ENST00000540747 TRBV30A0A0K0K1B3 111 aa4.32□□□□□ -1.72
YBX3-209ENST00000540747 C9JAW5 83 aa4.32□□□□□ -1.72
YBX3-209ENST00000540747 M0QXV9 152 aa4.32□□□□□ -1.72
YBX3-209ENST00000540747 SCGB1A1P11684 91 aa4.32□□□□□ -1.72
YBX3-209ENST00000540747 SMCPP49901 116 aaPredicted RBP4.32□□□□□ -1.72
YBX3-209ENST00000540747 HERV-K104P63124 156 aa4.32□□□□□ -1.72
YBX3-209ENST00000540747 KIAA0087Q14695 138 aa4.32□□□□□ -1.72
YBX3-209ENST00000540747 MEIG1Q5JSS6 88 aa4.32□□□□□ -1.72
YBX3-209ENST00000540747 ADAMTSL4-AS1Q5T5F5 129 aa4.32□□□□□ -1.72
YBX3-209ENST00000540747 LINC00242Q5T6M2 205 aa4.32□□□□□ -1.72
YBX3-209ENST00000540747 FAM19A5Q7Z5A7 132 aaPredicted RBP4.32□□□□□ -1.72
YBX3-209ENST00000540747 TEN1Q86WV5 123 aa4.32□□□□□ -1.72
YBX3-209ENST00000540747 LITAFQ99732 161 aa4.32□□□□□ -1.72
YBX3-209ENST00000540747 IGLV5-39A0A0G2JS06 123 aa4.31□□□□□ -1.72
YBX3-209ENST00000540747 SLC25A20O43772 301 aa4.31□□□□□ -1.72
YBX3-209ENST00000540747 NPC2P61916 151 aa4.31□□□□□ -1.72
YBX3-209ENST00000540747 UNQ6190/PRO20217Q6UXQ8 127 aa4.31□□□□□ -1.72
YBX3-209ENST00000540747 EIF4EBP3O60516 100 aaPredicted RBP4.3□□□□□ -1.72
YBX3-209ENST00000540747 C9orf129Q5T035 196 aaKnown RBP4.3□□□□□ -1.72
YBX3-209ENST00000540747 LINC00308Q8TCZ7 52 aa4.3□□□□□ -1.72
YBX3-209ENST00000540747 A0A087X002 238 aa4.29□□□□□ -1.72
YBX3-209ENST00000540747 TRBV10-2A0A0K0K1G8 114 aa4.29□□□□□ -1.72
YBX3-209ENST00000540747 A0A0U1RRA0 63 aa4.29□□□□□ -1.72
YBX3-209ENST00000540747 SMIM1B2RUZ4 78 aa4.29□□□□□ -1.72
YBX3-209ENST00000540747 TRIAP1O43715 76 aa4.29□□□□□ -1.72
YBX3-209ENST00000540747 ZNF861PO60384 105 aa4.29□□□□□ -1.72
YBX3-209ENST00000540747 C2orf82Q6UX34 121 aa4.29□□□□□ -1.72
YBX3-209ENST00000540747 ANKRD29Q8N6D5 301 aa4.29□□□□□ -1.72
YBX3-209ENST00000540747 COX7B2Q8TF08 81 aa4.29□□□□□ -1.72
YBX3-209ENST00000540747 ZNF625Q96I27 306 aaPredicted RBP4.29□□□□□ -1.72
YBX3-209ENST00000540747 NDUFC2-KCTD14E9PQ53 114 aa4.28□□□□□ -1.72
YBX3-209ENST00000540747 GAGE2EQ4V326 116 aa4.28□□□□□ -1.72
YBX3-209ENST00000540747 DAND5Q8N907 189 aa4.28□□□□□ -1.72
YBX3-209ENST00000540747 GAGE2DQ9UEU5 116 aa4.28□□□□□ -1.72
YBX3-209ENST00000540747 H3BT86 120 aa4.27□□□□□ -1.73
YBX3-209ENST00000540747 UBE2BP63146 152 aa4.27□□□□□ -1.73
YBX3-209ENST00000540747 TOMM7Q9P0U1 55 aa4.27□□□□□ -1.73
YBX3-209ENST00000540747 TRAV13-2A0A0B4J235 113 aa4.26□□□□□ -1.73
YBX3-209ENST00000540747 LST1O00453 97 aa4.26□□□□□ -1.73
YBX3-209ENST00000540747 LINC00158P58513 81 aa4.26□□□□□ -1.73
YBX3-209ENST00000540747 CLEC2BQ92478 149 aa4.26□□□□□ -1.73
YBX3-209ENST00000540747 PPDPFQ9H3Y8 114 aa4.26□□□□□ -1.73
YBX3-209ENST00000540747 TPRXLQ17RH7 258 aa4.25□□□□□ -1.73
YBX3-209ENST00000540747 KRTAP13-2Q52LG2 175 aa4.25□□□□□ -1.73
YBX3-209ENST00000540747 C6orf226Q5I0X4 101 aa4.25□□□□□ -1.73
YBX3-209ENST00000540747 LINC01561Q8N1V8 128 aa4.25□□□□□ -1.73
YBX3-209ENST00000540747 CDIP1Q9H305 208 aa4.25□□□□□ -1.73
YBX3-209ENST00000540747 A0A1B0GV72 72 aa4.24□□□□□ -1.73
YBX3-209ENST00000540747 CRYGAP11844 174 aa4.24□□□□□ -1.73
YBX3-209ENST00000540747 LCE2DQ5TA82 110 aaPredicted RBP4.24□□□□□ -1.73
YBX3-209ENST00000540747 SOSTDC1Q6X4U4 206 aa4.24□□□□□ -1.73
YBX3-209ENST00000540747 KRTAP13-1Q8IUC0 172 aa4.24□□□□□ -1.73
YBX3-209ENST00000540747 MIR7-3HGQ8N6C7 128 aa4.24□□□□□ -1.73
YBX3-209ENST00000540747 C22orf24Q9Y442 160 aa4.24□□□□□ -1.73
YBX3-209ENST00000540747 BCE1O60756 84 aa4.23□□□□□ -1.73
YBX3-209ENST00000540747 SNCGO76070 127 aa4.23□□□□□ -1.73
YBX3-209ENST00000540747 MT-ATP8P03928 68 aa4.23□□□□□ -1.73
YBX3-209ENST00000540747 CKS1BP61024 79 aa4.23□□□□□ -1.73
YBX3-209ENST00000540747 TYMSOSQ8TAI1 123 aa4.23□□□□□ -1.73
YBX3-209ENST00000540747 SND1-IT1Q9HBX3 110 aa4.23□□□□□ -1.73
YBX3-209ENST00000540747 FSIP2Q5CZC0 6907 aa4.22□□□□□ -1.73
YBX3-209ENST00000540747 TEX49A0A1B0GTD5 131 aa4.22□□□□□ -1.73
YBX3-209ENST00000540747 H0YGX0 51 aa4.22□□□□□ -1.73
YBX3-209ENST00000540747 TRACP01848 142 aa4.22□□□□□ -1.73
YBX3-209ENST00000540747 BAALC-AS2P0C853 105 aa4.22□□□□□ -1.73
YBX3-209ENST00000540747 PFN2P35080 140 aa4.22□□□□□ -1.73
YBX3-209ENST00000540747 RPL28P46779 137 aaKnown RBP4.22□□□□□ -1.73
YBX3-209ENST00000540747 OR13C6PQ8NH95 151 aa4.22□□□□□ -1.73
YBX3-209ENST00000540747 RETNLBQ9BQ08 111 aa4.22□□□□□ -1.73
YBX3-209ENST00000540747 ACYP1P07311 99 aa4.21□□□□□ -1.74
YBX3-209ENST00000540747 FAM229BQ4G0N7 80 aa4.21□□□□□ -1.74
YBX3-209ENST00000540747 MRPL55Q7Z7F7 128 aaKnown RBP4.21□□□□□ -1.74
YBX3-209ENST00000540747 Q8IZM0 81 aa4.21□□□□□ -1.74
YBX3-209ENST00000540747 XAGE1AQ9HD64 81 aa4.21□□□□□ -1.74
YBX3-209ENST00000540747 ANAPC11Q9NYG5 84 aa4.21□□□□□ -1.74
YBX3-209ENST00000540747 LINC00304Q8N9R0 145 aa4.2□□□□□ -1.74
YBX3-209ENST00000540747 IGLV7-46A0A075B6I9 117 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 95 ms