RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 M0R143 59 aa9.52□□□□□ -0.89
CHMP4A-207ENST00000533523 BVES-AS1Q5T3Y7 98 aa9.52□□□□□ -0.89
CHMP4A-207ENST00000533523 Q8NDZ9 215 aa9.52□□□□□ -0.89
CHMP4A-207ENST00000533523 VPREB1P12018 145 aa9.5□□□□□ -0.89
CHMP4A-207ENST00000533523 LBHQ53QV2 105 aaPredicted RBP9.5□□□□□ -0.89
CHMP4A-207ENST00000533523 KRTAP7-1Q8IUC3 87 aa9.5□□□□□ -0.89
CHMP4A-207ENST00000533523 TMEM238LA0A1B0GVL6 79 aa9.49□□□□□ -0.89
CHMP4A-207ENST00000533523 A6NJY4 79 aa9.49□□□□□ -0.89
CHMP4A-207ENST00000533523 NDUFC2O95298 119 aa9.49□□□□□ -0.89
CHMP4A-207ENST00000533523 KRTAP11-1Q8IUC1 163 aa9.49□□□□□ -0.89
CHMP4A-207ENST00000533523 IGLV1-50A0A075B6I6 118 aa9.48□□□□□ -0.89
CHMP4A-207ENST00000533523 NCR3O14931 201 aa9.48□□□□□ -0.89
CHMP4A-207ENST00000533523 PRR4Q16378 134 aa9.47□□□□□ -0.89
CHMP4A-207ENST00000533523 BATFQ16520 125 aa9.47□□□□□ -0.89
CHMP4A-207ENST00000533523 C22orf24Q9Y442 160 aa9.47□□□□□ -0.89
CHMP4A-207ENST00000533523 IGLV5-37A0A075B6J1 123 aa9.46□□□□□ -0.9
CHMP4A-207ENST00000533523 IGKV2-28A0A075B6P5 120 aa9.46□□□□□ -0.9
CHMP4A-207ENST00000533523 IGKV2D-28P01615 120 aa9.46□□□□□ -0.9
CHMP4A-207ENST00000533523 CFC1BP0CG36 223 aa9.46□□□□□ -0.9
CHMP4A-207ENST00000533523 CFC1P0CG37 223 aa9.46□□□□□ -0.9
CHMP4A-207ENST00000533523 NKAPP1Q8N9T2 125 aa9.46□□□□□ -0.9
CHMP4A-207ENST00000533523 NHP2Q9NX24 153 aaKnown RBP9.46□□□□□ -0.9
CHMP4A-207ENST00000533523 A0A0B4J2C4 111 aa9.44□□□□□ -0.9
CHMP4A-207ENST00000533523 TRBV10-2A0A0K0K1G8 114 aa9.44□□□□□ -0.9
CHMP4A-207ENST00000533523 M0R378 163 aa9.44□□□□□ -0.9
CHMP4A-207ENST00000533523 KRTAP1-4P0C5Y4 121 aa9.44□□□□□ -0.9
CHMP4A-207ENST00000533523 MRPL55Q7Z7F7 128 aaKnown RBP9.44□□□□□ -0.9
CHMP4A-207ENST00000533523 LINC00337Q8N6G1 96 aa9.44□□□□□ -0.9
CHMP4A-207ENST00000533523 SNHG12Q9BXW3 62 aa9.44□□□□□ -0.9
CHMP4A-207ENST00000533523 A0A1B0GWB2 263 aa9.43□□□□□ -0.9
CHMP4A-207ENST00000533523 A6NDN8 102 aa9.43□□□□□ -0.9
CHMP4A-207ENST00000533523 K7ERJ3 54 aa9.43□□□□□ -0.9
CHMP4A-207ENST00000533523 RAB37Q96AX2 223 aa9.43□□□□□ -0.9
CHMP4A-207ENST00000533523 TRAV13-2A0A0B4J235 113 aa9.42□□□□□ -0.9
CHMP4A-207ENST00000533523 RPL13AP40429 203 aaKnown RBP9.42□□□□□ -0.9
CHMP4A-207ENST00000533523 MUC17Q685J3 4493 aa9.42□□□□□ -0.9
CHMP4A-207ENST00000533523 GAGE10A6NGK3 116 aa9.41□□□□□ -0.9
CHMP4A-207ENST00000533523 OR13C6PQ8NH95 151 aa9.41□□□□□ -0.9
CHMP4A-207ENST00000533523 LINC00167Q96N53 147 aa9.4□□□□□ -0.9
CHMP4A-207ENST00000533523 PRO1854Q9UHT4 67 aa9.4□□□□□ -0.9
CHMP4A-207ENST00000533523 TRBV10-3A0A0K0K1G6 114 aa9.39□□□□□ -0.91
CHMP4A-207ENST00000533523 A0A0U1RQV1 116 aa9.39□□□□□ -0.91
CHMP4A-207ENST00000533523 S100A7L2Q5SY68 101 aa9.39□□□□□ -0.91
CHMP4A-207ENST00000533523 IGLV6-57P01721 117 aa9.38□□□□□ -0.91
CHMP4A-207ENST00000533523 H7C2G1 150 aa9.37□□□□□ -0.91
CHMP4A-207ENST00000533523 ZNF861PO60384 105 aa9.37□□□□□ -0.91
CHMP4A-207ENST00000533523 TMEM126AQ9H061 195 aa9.37□□□□□ -0.91
CHMP4A-207ENST00000533523 RPL37AP8A6NKH3 93 aa9.36□□□□□ -0.91
CHMP4A-207ENST00000533523 BCE1O60756 84 aa9.36□□□□□ -0.91
CHMP4A-207ENST00000533523 RPL28P46779 137 aaKnown RBP9.35□□□□□ -0.91
CHMP4A-207ENST00000533523 TSPAN13O95857 204 aa9.34□□□□□ -0.91
CHMP4A-207ENST00000533523 Q1RN00 199 aa9.34□□□□□ -0.91
CHMP4A-207ENST00000533523 COL5A1-AS1Q5SY13 56 aa9.34□□□□□ -0.91
CHMP4A-207ENST00000533523 TRAV23DV6A0A075B6W5 121 aa9.33□□□□□ -0.92
CHMP4A-207ENST00000533523 SMIM11BQ8TCY0 68 aa9.33□□□□□ -0.92
CHMP4A-207ENST00000533523 PRYO14603 147 aa9.32□□□□□ -0.92
CHMP4A-207ENST00000533523 TAX1BP3O14907 124 aa9.32□□□□□ -0.92
CHMP4A-207ENST00000533523 KCNQ1DNQ9H478 68 aa9.32□□□□□ -0.92
CHMP4A-207ENST00000533523 CBY1Q9Y3M2 126 aa9.32□□□□□ -0.92
CHMP4A-207ENST00000533523 FSIP2Q5CZC0 6907 aa9.31□□□□□ -0.92
CHMP4A-207ENST00000533523 UBE2AP49459 152 aa9.29□□□□□ -0.92
CHMP4A-207ENST00000533523 NAA38Q9BRA0 125 aaKnown RBP9.29□□□□□ -0.92
CHMP4A-207ENST00000533523 ZNF73O43830 326 aaPredicted RBP9.28□□□□□ -0.92
CHMP4A-207ENST00000533523 PSMB2P49721 201 aa9.28□□□□□ -0.92
CHMP4A-207ENST00000533523 C6orf99Q4VX62 202 aa9.28□□□□□ -0.92
CHMP4A-207ENST00000533523 C9orf118A6NHY6 69 aa9.27□□□□□ -0.93
CHMP4A-207ENST00000533523 TRIAP1O43715 76 aa9.27□□□□□ -0.93
CHMP4A-207ENST00000533523 A0A087X002 238 aa9.26□□□□□ -0.93
CHMP4A-207ENST00000533523 H3BUT2 72 aa9.26□□□□□ -0.93
CHMP4A-207ENST00000533523 SPRR1AP35321 89 aa9.26□□□□□ -0.93
CHMP4A-207ENST00000533523 KRTAP13-1Q8IUC0 172 aa9.25□□□□□ -0.93
CHMP4A-207ENST00000533523 TYMSOSQ8TAI1 123 aa9.25□□□□□ -0.93
CHMP4A-207ENST00000533523 ETDCA0A1B0GVM5 59 aa9.24□□□□□ -0.93
CHMP4A-207ENST00000533523 KRTAP4-16G5E9R7 235 aaPredicted RBP9.24□□□□□ -0.93
CHMP4A-207ENST00000533523 CRYGAP11844 174 aa9.24□□□□□ -0.93
CHMP4A-207ENST00000533523 FAM19A1Q7Z5A9 133 aa9.24□□□□□ -0.93
CHMP4A-207ENST00000533523 COX7BP24311 80 aa9.23□□□□□ -0.93
CHMP4A-207ENST00000533523 VAMP3Q15836 100 aa9.23□□□□□ -0.93
CHMP4A-207ENST00000533523 TRBV7-6A0A0J9YX20 115 aa9.22□□□□□ -0.93
CHMP4A-207ENST00000533523 COX6CP09669 75 aa9.22□□□□□ -0.93
CHMP4A-207ENST00000533523 B5MCH6 92 aa9.21□□□□□ -0.94
CHMP4A-207ENST00000533523 SCGB1C2P0DMR2 95 aa9.21□□□□□ -0.94
CHMP4A-207ENST00000533523 ELOF1P60002 83 aaKnown RBP9.21□□□□□ -0.94
CHMP4A-207ENST00000533523 PRLHP81277 87 aa9.21□□□□□ -0.94
CHMP4A-207ENST00000533523 RETNLBQ9BQ08 111 aa9.21□□□□□ -0.94
CHMP4A-207ENST00000533523 A0A1W2PPM0 123 aa9.2□□□□□ -0.94
CHMP4A-207ENST00000533523 ANAPC11Q9NYG5 84 aa9.2□□□□□ -0.94
CHMP4A-207ENST00000533523 H0YGX0 51 aa9.19□□□□□ -0.94
CHMP4A-207ENST00000533523 LYRM7Q5U5X0 104 aa9.19□□□□□ -0.94
CHMP4A-207ENST00000533523 Q6ZRX8 168 aa9.19□□□□□ -0.94
CHMP4A-207ENST00000533523 CLEC2BQ92478 149 aa9.19□□□□□ -0.94
CHMP4A-207ENST00000533523 FABP2P12104 132 aa9.18□□□□□ -0.94
CHMP4A-207ENST00000533523 FAM229BQ4G0N7 80 aa9.17□□□□□ -0.94
CHMP4A-207ENST00000533523 FAM218AQ96MZ4 157 aa9.17□□□□□ -0.94
CHMP4A-207ENST00000533523 KRTAP13-2Q52LG2 175 aa9.16□□□□□ -0.94
CHMP4A-207ENST00000533523 LINC00575Q6W349 94 aa9.16□□□□□ -0.94
CHMP4A-207ENST00000533523 Q9BRP9 147 aa9.16□□□□□ -0.94
CHMP4A-207ENST00000533523 LINC00304Q8N9R0 145 aa9.15□□□□□ -0.94
CHMP4A-207ENST00000533523 HIGD2AQ9BW72 106 aa9.15□□□□□ -0.94
CHMP4A-207ENST00000533523 SLC25A20O43772 301 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 118 ms