RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 WDFY4Q6ZS81 3184 aa7.49□□□□□ -1.21
LIMCH1-217ENST00000512946 CDSNQ15517 529 aa7.48□□□□□ -1.21
LIMCH1-217ENST00000512946 LINC01558Q9Y6Z2 57 aa7.48□□□□□ -1.21
LIMCH1-217ENST00000512946 TRANK1O15050 2925 aa7.48□□□□□ -1.21
LIMCH1-217ENST00000512946 OCR1Q9BZK8 76 aa7.48□□□□□ -1.21
LIMCH1-217ENST00000512946 CEP295Q9C0D2 2601 aa7.48□□□□□ -1.21
LIMCH1-217ENST00000512946 Q8N377 158 aa7.48□□□□□ -1.21
LIMCH1-217ENST00000512946 IGLV7-46A0A075B6I9 117 aa7.47□□□□□ -1.21
LIMCH1-217ENST00000512946 ASB16-AS1Q495Z4 193 aa7.47□□□□□ -1.21
LIMCH1-217ENST00000512946 LINC00483Q53H64 154 aa7.47□□□□□ -1.21
LIMCH1-217ENST00000512946 MYO15AQ9UKN7 3530 aa7.47□□□□□ -1.21
LIMCH1-217ENST00000512946 DNAH10OSP0CZ25 163 aa7.46□□□□□ -1.21
LIMCH1-217ENST00000512946 HIVEP3Q5T1R4 2406 aa7.46□□□□□ -1.22
LIMCH1-217ENST00000512946 C10orf142B7Z368 130 aa7.46□□□□□ -1.22
LIMCH1-217ENST00000512946 TNRC18O15417 2968 aaPredicted RBP7.46□□□□□ -1.22
LIMCH1-217ENST00000512946 TLX1NBP0CAT3 122 aa7.45□□□□□ -1.22
LIMCH1-217ENST00000512946 CEP192Q8TEP8 1941 aa7.44□□□□□ -1.22
LIMCH1-217ENST00000512946 CHD8Q9HCK8 2581 aa7.43□□□□□ -1.22
LIMCH1-217ENST00000512946 IGLV5-48A0A075B6I7 105 aa7.43□□□□□ -1.22
LIMCH1-217ENST00000512946 CHTF8P0CG12 524 aa7.43□□□□□ -1.22
LIMCH1-217ENST00000512946 Q5XG85 94 aa7.43□□□□□ -1.22
LIMCH1-217ENST00000512946 RTL8CO15255 209 aa7.42□□□□□ -1.22
LIMCH1-217ENST00000512946 C9orf163Q8N9P6 203 aa7.42□□□□□ -1.22
LIMCH1-217ENST00000512946 COL4A4P53420 1690 aaPredicted RBP7.42□□□□□ -1.22
LIMCH1-217ENST00000512946 IGF2RP11717 2491 aa7.41□□□□□ -1.22
LIMCH1-217ENST00000512946 SPTBN5Q9NRC6 3674 aaKnown RBP7.41□□□□□ -1.22
LIMCH1-217ENST00000512946 PRR34Q9NV39 138 aa7.41□□□□□ -1.22
LIMCH1-217ENST00000512946 NBDYA0A0U1RRE5 68 aa7.41□□□□□ -1.22
LIMCH1-217ENST00000512946 DSCR10P59022 87 aa7.41□□□□□ -1.22
LIMCH1-217ENST00000512946 CSNK1G2-AS1Q8NCQ2 148 aa7.41□□□□□ -1.22
LIMCH1-217ENST00000512946 CCDC168Q8NDH2 2452 aa7.4□□□□□ -1.22
LIMCH1-217ENST00000512946 Q8N9P0 234 aaPredicted RBP7.4□□□□□ -1.23
LIMCH1-217ENST00000512946 PTPRSQ13332 1948 aa7.39□□□□□ -1.23
LIMCH1-217ENST00000512946 A0A1B0GU33 70 aa7.39□□□□□ -1.23
LIMCH1-217ENST00000512946 PIEZO2Q9H5I5 2752 aa7.39□□□□□ -1.23
LIMCH1-217ENST00000512946 ZNF861PO60384 105 aa7.39□□□□□ -1.23
LIMCH1-217ENST00000512946 MUC3AQ02505 3323 aa7.38□□□□□ -1.23
LIMCH1-217ENST00000512946 A0A1W2PNM2 257 aa7.38□□□□□ -1.23
LIMCH1-217ENST00000512946 F8P00451 2351 aa7.37□□□□□ -1.23
LIMCH1-217ENST00000512946 LAMA1P25391 3075 aa7.37□□□□□ -1.23
LIMCH1-217ENST00000512946 Q8NAQ8 132 aa7.36□□□□□ -1.23
LIMCH1-217ENST00000512946 FRYLO94915 3013 aa7.36□□□□□ -1.23
LIMCH1-217ENST00000512946 PTPRBP23467 1997 aa7.35□□□□□ -1.23
LIMCH1-217ENST00000512946 PRRC2CQ9Y520 2896 aaKnown RBP7.35□□□□□ -1.23
LIMCH1-217ENST00000512946 PRR26Q8N8Z3 221 aa7.35□□□□□ -1.23
LIMCH1-217ENST00000512946 LINC00588Q9Y4M8 146 aa7.35□□□□□ -1.23
LIMCH1-217ENST00000512946 EIF4EBP3O60516 100 aaPredicted RBP7.34□□□□□ -1.23
LIMCH1-217ENST00000512946 SPRR4Q96PI1 79 aa7.34□□□□□ -1.23
LIMCH1-217ENST00000512946 CFAP54Q96N23 3096 aa7.34□□□□□ -1.23
LIMCH1-217ENST00000512946 LINC00304Q8N9R0 145 aa7.34□□□□□ -1.23
LIMCH1-217ENST00000512946 FP248Q71RG6 208 aaPredicted RBP7.33□□□□□ -1.24
LIMCH1-217ENST00000512946 IGLV5-37A0A075B6J1 123 aa7.32□□□□□ -1.24
LIMCH1-217ENST00000512946 LTBP2Q14767 1821 aa7.32□□□□□ -1.24
LIMCH1-217ENST00000512946 CELSR3Q9NYQ7 3312 aa7.31□□□□□ -1.24
LIMCH1-217ENST00000512946 A0A0D9SG42 100 aa7.3□□□□□ -1.24
LIMCH1-217ENST00000512946 TNP2Q05952 138 aa7.3□□□□□ -1.24
LIMCH1-217ENST00000512946 ZFYVE26Q68DK2 2539 aa7.3□□□□□ -1.24
LIMCH1-217ENST00000512946 Q5VV11 94 aa7.29□□□□□ -1.24
LIMCH1-217ENST00000512946 ANKRD11Q6UB99 2663 aaPredicted RBP7.29□□□□□ -1.24
LIMCH1-217ENST00000512946 FAM168BA1KXE4 195 aa7.29□□□□□ -1.24
LIMCH1-217ENST00000512946 LRP4O75096 1905 aa7.28□□□□□ -1.24
LIMCH1-217ENST00000512946 A0A1W2PPR1 153 aa7.28□□□□□ -1.24
LIMCH1-217ENST00000512946 COX6B2Q6YFQ2 88 aa7.28□□□□□ -1.24
LIMCH1-217ENST00000512946 TET2Q6N021 2002 aaPredicted RBP7.27□□□□□ -1.25
LIMCH1-217ENST00000512946 CPAMD8Q8IZJ3 1885 aa7.27□□□□□ -1.25
LIMCH1-217ENST00000512946 LINC00612Q8N6U2 182 aa7.27□□□□□ -1.25
LIMCH1-217ENST00000512946 EPG5Q9HCE0 2579 aa7.26□□□□□ -1.25
LIMCH1-217ENST00000512946 CSAG1Q6PB30 78 aa7.26□□□□□ -1.25
LIMCH1-217ENST00000512946 MUC22E2RYF6 1773 aaPredicted RBP7.26□□□□□ -1.25
LIMCH1-217ENST00000512946 FN1P02751 2386 aaKnown RBP7.26□□□□□ -1.25
LIMCH1-217ENST00000512946 RAI1Q7Z5J4 1906 aaPredicted RBP7.26□□□□□ -1.25
LIMCH1-217ENST00000512946 CAMK2N1Q7Z7J9 78 aa7.26□□□□□ -1.25
LIMCH1-217ENST00000512946 PRAC1Q96KF2 57 aa7.25□□□□□ -1.25
LIMCH1-217ENST00000512946 KRTAP16-1A8MUX0 517 aa7.23□□□□□ -1.25
LIMCH1-217ENST00000512946 HRES1P13985 223 aa7.23□□□□□ -1.25
LIMCH1-217ENST00000512946 Q8N1X5 172 aa7.22□□□□□ -1.25
LIMCH1-217ENST00000512946 CNBPP62633 177 aaKnown RBP7.22□□□□□ -1.25
LIMCH1-217ENST00000512946 KRTAP10-9P60411 292 aa7.21□□□□□ -1.25
LIMCH1-217ENST00000512946 IGLV7-43P04211 117 aa7.21□□□□□ -1.26
LIMCH1-217ENST00000512946 TLN1Q9Y490 2541 aaKnown RBP7.2□□□□□ -1.26
LIMCH1-217ENST00000512946 WDFY3Q8IZQ1 3526 aa7.2□□□□□ -1.26
LIMCH1-217ENST00000512946 FREM2Q5SZK8 3169 aa7.18□□□□□ -1.26
LIMCH1-217ENST00000512946 SPINK7P58062 85 aa7.18□□□□□ -1.26
LIMCH1-217ENST00000512946 SMR3AQ99954 134 aa7.18□□□□□ -1.26
LIMCH1-217ENST00000512946 FAM229BQ4G0N7 80 aa7.18□□□□□ -1.26
LIMCH1-217ENST00000512946 ROMO1P60602 79 aa7.17□□□□□ -1.26
LIMCH1-217ENST00000512946 DMDP11532 3685 aa7.16□□□□□ -1.26
LIMCH1-217ENST00000512946 FASNP49327 2511 aaKnown RBP7.15□□□□□ -1.26
LIMCH1-217ENST00000512946 PKD1L2Q7Z442 2459 aa7.15□□□□□ -1.26
LIMCH1-217ENST00000512946 ZNF575Q86XF7 245 aa7.14□□□□□ -1.27
LIMCH1-217ENST00000512946 TLN2Q9Y4G6 2542 aa7.14□□□□□ -1.27
LIMCH1-217ENST00000512946 MMP24-AS1A0A0U1RRL7 71 aa7.13□□□□□ -1.27
LIMCH1-217ENST00000512946 C19orf73Q9NVV2 129 aa7.13□□□□□ -1.27
LIMCH1-217ENST00000512946 RPL37P61927 97 aaKnown RBP7.13□□□□□ -1.27
LIMCH1-217ENST00000512946 C9orf92A6NGG3 77 aa7.12□□□□□ -1.27
LIMCH1-217ENST00000512946 ABCA12Q86UK0 2595 aa7.12□□□□□ -1.27
LIMCH1-217ENST00000512946 PSORS1C2Q9UIG4 136 aa7.11□□□□□ -1.27
LIMCH1-217ENST00000512946 USP9XQ93008 2570 aaPredicted RBP7.11□□□□□ -1.27
LIMCH1-217ENST00000512946 A0A087WTM6 91 aa7.1□□□□□ -1.27
LIMCH1-217ENST00000512946 A0A0G2JQZ4 141 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms