RNA–Protein interactions for RNA: ENST00000511628.1

CHD1-207, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

TSL 3

Gene CHD1, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-207ENST00000511628 AKAP12Q02952 1782 aa-0.15□□□□□ -2.43
CHD1-207ENST00000511628 PCLOQ9Y6V0 5065 aa-0.16□□□□□ -2.43
CHD1-207ENST00000511628 NEXMIFQ5QGS0 1516 aa-0.16□□□□□ -2.43
CHD1-207ENST00000511628 C3orf79P0CE67 100 aa-0.16□□□□□ -2.44
CHD1-207ENST00000511628 HMGA1P17096 107 aaKnown RBP-0.16□□□□□ -2.44
CHD1-207ENST00000511628 KRTAP20-1Q3LI63 56 aa-0.16□□□□□ -2.44
CHD1-207ENST00000511628 WFDC9Q8NEX5 89 aa-0.16□□□□□ -2.44
CHD1-207ENST00000511628 HECTD4Q9Y4D8 3996 aa-0.16□□□□□ -2.44
CHD1-207ENST00000511628 ANKHD1Q8IWZ3 2542 aaKnown RBP-0.16□□□□□ -2.44
CHD1-207ENST00000511628 LRP1BQ9NZR2 4599 aa-0.16□□□□□ -2.44
CHD1-207ENST00000511628 SRRM2Q9UQ35 2752 aaKnown RBP-0.17□□□□□ -2.44
CHD1-207ENST00000511628 NBASA2RRP1 2371 aa-0.17□□□□□ -2.44
CHD1-207ENST00000511628 ABCC3O15438 1527 aa-0.17□□□□□ -2.44
CHD1-207ENST00000511628 TRAV21A0A0B4J279 112 aa-0.17□□□□□ -2.44
CHD1-207ENST00000511628 SPRR2AP35326 72 aa-0.17□□□□□ -2.44
CHD1-207ENST00000511628 QSER1Q2KHR3 1735 aa-0.17□□□□□ -2.44
CHD1-207ENST00000511628 TTC37Q6PGP7 1564 aa-0.17□□□□□ -2.44
CHD1-207ENST00000511628 REV3LO60673 3130 aa-0.17□□□□□ -2.44
CHD1-207ENST00000511628 RGPD4Q7Z3J3 1758 aa-0.17□□□□□ -2.44
CHD1-207ENST00000511628 MYO3AQ8NEV4 1616 aa-0.17□□□□□ -2.44
CHD1-207ENST00000511628 ALKQ9UM73 1620 aa-0.17□□□□□ -2.44
CHD1-207ENST00000511628 KMT2CQ8NEZ4 4911 aaKnown RBP-0.18□□□□□ -2.44
CHD1-207ENST00000511628 RGPD2P0DJD1 1756 aa-0.18□□□□□ -2.44
CHD1-207ENST00000511628 LRRC7Q96NW7 1537 aa-0.18□□□□□ -2.44
CHD1-207ENST00000511628 NBEAL1Q6ZS30 2694 aa-0.19□□□□□ -2.44
CHD1-207ENST00000511628 UACAQ9BZF9 1416 aa-0.19□□□□□ -2.44
CHD1-207ENST00000511628 NDUFA3O95167 84 aa-0.19□□□□□ -2.44
CHD1-207ENST00000511628 IFI27P40305 119 aaPredicted RBP-0.19□□□□□ -2.44
CHD1-207ENST00000511628 GNG2P59768 71 aa-0.19□□□□□ -2.44
CHD1-207ENST00000511628 RGPD3A6NKT7 1758 aaPredicted RBP-0.19□□□□□ -2.44
CHD1-207ENST00000511628 SPG11Q96JI7 2443 aa-0.19□□□□□ -2.44
CHD1-207ENST00000511628 PRKDCP78527 4128 aaKnown RBP-0.19□□□□□ -2.44
CHD1-207ENST00000511628 CICQ96RK0 1608 aaPredicted RBP-0.2□□□□□ -2.44
CHD1-207ENST00000511628 PREX1Q8TCU6 1659 aa-0.2□□□□□ -2.44
CHD1-207ENST00000511628 UMAD1C9J7I0 102 aa-0.2□□□□□ -2.44
CHD1-207ENST00000511628 LELP1Q5T871 98 aa-0.2□□□□□ -2.44
CHD1-207ENST00000511628 URB2Q14146 1524 aaKnown RBP-0.2□□□□□ -2.44
CHD1-207ENST00000511628 PTPN23Q9H3S7 1636 aa-0.2□□□□□ -2.44
CHD1-207ENST00000511628 ADIRFQ15847 76 aa-0.21□□□□□ -2.44
CHD1-207ENST00000511628 KRTAP19-7Q3SYF9 63 aa-0.21□□□□□ -2.44
CHD1-207ENST00000511628 ATP5EP2Q5VTU8 51 aa-0.21□□□□□ -2.44
CHD1-207ENST00000511628 S100A13Q99584 98 aa-0.21□□□□□ -2.44
CHD1-207ENST00000511628 PRO3102Q9H379 93 aa-0.21□□□□□ -2.44
CHD1-207ENST00000511628 CREBBPQ92793 2442 aa-0.22□□□□□ -2.44
CHD1-207ENST00000511628 PDZD2O15018 2839 aa-0.22□□□□□ -2.44
CHD1-207ENST00000511628 TIAM2Q8IVF5 1701 aa-0.22□□□□□ -2.44
CHD1-207ENST00000511628 PPLO60437 1756 aa-0.22□□□□□ -2.45
CHD1-207ENST00000511628 SPTBN4Q9H254 2564 aa-0.22□□□□□ -2.45
CHD1-207ENST00000511628 CCDC88BA6NC98 1476 aa-0.22□□□□□ -2.45
CHD1-207ENST00000511628 ADAMTS12P58397 1594 aa-0.23□□□□□ -2.45
CHD1-207ENST00000511628 SETD2Q9BYW2 2564 aaPredicted RBP-0.23□□□□□ -2.45
CHD1-207ENST00000511628 LINC00158P58513 81 aa-0.23□□□□□ -2.45
CHD1-207ENST00000511628 ST20Q9HBF5 79 aa-0.23□□□□□ -2.45
CHD1-207ENST00000511628 TRANK1O15050 2925 aa-0.23□□□□□ -2.45
CHD1-207ENST00000511628 MAP3K4Q9Y6R4 1608 aa-0.24□□□□□ -2.45
CHD1-207ENST00000511628 RGPD1P0DJD0 1748 aa-0.24□□□□□ -2.45
CHD1-207ENST00000511628 SUPT6HQ7KZ85 1726 aaKnown RBP-0.24□□□□□ -2.45
CHD1-207ENST00000511628 UBR1Q8IWV7 1749 aa-0.24□□□□□ -2.45
CHD1-207ENST00000511628 LTN1O94822 1766 aa-0.24□□□□□ -2.45
CHD1-207ENST00000511628 EPG5Q9HCE0 2579 aa-0.24□□□□□ -2.45
CHD1-207ENST00000511628 C9orf92A6NGG3 77 aa-0.24□□□□□ -2.45
CHD1-207ENST00000511628 SPRR2EP22531 72 aa-0.24□□□□□ -2.45
CHD1-207ENST00000511628 TDRG1Q3Y452 100 aa-0.24□□□□□ -2.45
CHD1-207ENST00000511628 RYR2Q92736 4967 aa-0.24□□□□□ -2.45
CHD1-207ENST00000511628 SONP18583 2426 aaKnown RBP-0.24□□□□□ -2.45
CHD1-207ENST00000511628 NCOA2Q15596 1464 aa-0.24□□□□□ -2.45
CHD1-207ENST00000511628 HECTD1Q9ULT8 2610 aa-0.24□□□□□ -2.45
CHD1-207ENST00000511628 KIF14Q15058 1648 aa-0.24□□□□□ -2.45
CHD1-207ENST00000511628 MAP1AP78559 2803 aaPredicted RBP-0.24□□□□□ -2.45
CHD1-207ENST00000511628 A0A087WXM4 84 aa-0.25□□□□□ -2.45
CHD1-207ENST00000511628 LCE6AA0A183 80 aa-0.25□□□□□ -2.45
CHD1-207ENST00000511628 IFI6P09912 130 aa-0.25□□□□□ -2.45
CHD1-207ENST00000511628 KRTAP6-2Q3LI66 62 aa-0.25□□□□□ -2.45
CHD1-207ENST00000511628 DEFB121Q5J5C9 76 aa-0.25□□□□□ -2.45
CHD1-207ENST00000511628 NWD1Q149M9 1564 aa-0.25□□□□□ -2.45
CHD1-207ENST00000511628 TNRC6CQ9HCJ0 1690 aaKnown RBP-0.25□□□□□ -2.45
CHD1-207ENST00000511628 NF1P21359 2839 aa-0.26□□□□□ -2.45
CHD1-207ENST00000511628 RYR1P21817 5038 aa-0.26□□□□□ -2.45
CHD1-207ENST00000511628 CEP170BQ9Y4F5 1589 aaPredicted RBP-0.26□□□□□ -2.45
CHD1-207ENST00000511628 MRPL33O75394 65 aaKnown RBP-0.26□□□□□ -2.45
CHD1-207ENST00000511628 DOPEY1Q5JWR5 2465 aa-0.26□□□□□ -2.45
CHD1-207ENST00000511628 USH2AO75445 5202 aa-0.26□□□□□ -2.45
CHD1-207ENST00000511628 SVEP1Q4LDE5 3571 aa-0.26□□□□□ -2.45
CHD1-207ENST00000511628 RYR3Q15413 4870 aa-0.26□□□□□ -2.45
CHD1-207ENST00000511628 USP32Q8NFA0 1604 aa-0.27□□□□□ -2.45
CHD1-207ENST00000511628 MAGI3Q5TCQ9 1506 aa-0.27□□□□□ -2.45
CHD1-207ENST00000511628 LYNX1G3V0Z9 82 aa-0.27□□□□□ -2.45
CHD1-207ENST00000511628 MXRA5Q9NR99 2828 aa-0.27□□□□□ -2.45
CHD1-207ENST00000511628 TGP01266 2768 aa-0.27□□□□□ -2.45
CHD1-207ENST00000511628 POLR1AO95602 1720 aaPredicted RBP-0.27□□□□□ -2.45
CHD1-207ENST00000511628 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-0.28□□□□□ -2.45
CHD1-207ENST00000511628 DEFB131BA0A096LNP1 70 aa-0.28□□□□□ -2.45
CHD1-207ENST00000511628 H3BNG1 76 aa-0.28□□□□□ -2.45
CHD1-207ENST00000511628 NDUFA4O00483 81 aa-0.28□□□□□ -2.45
CHD1-207ENST00000511628 NREPQ16612 68 aa-0.28□□□□□ -2.45
CHD1-207ENST00000511628 C4AP0C0L4 1744 aa-0.28□□□□□ -2.45
CHD1-207ENST00000511628 C4BP0C0L5 1744 aa-0.28□□□□□ -2.45
CHD1-207ENST00000511628 WIZO95785 1651 aa-0.28□□□□□ -2.45
CHD1-207ENST00000511628 TMEM131LA2VDJ0 1609 aa-0.28□□□□□ -2.45
CHD1-207ENST00000511628 DEPDC5O75140 1603 aa-0.28□□□□□ -2.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms