RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 RGPD5Q99666 1765 aa-0.75□□□□□ -2.53
CCDC88A-212ENST00000474059 PKD1P98161 4303 aa-0.75□□□□□ -2.53
CCDC88A-212ENST00000474059 NMSQ5H8A3 153 aa-0.75□□□□□ -2.53
CCDC88A-212ENST00000474059 LRRC9Q6ZRR7 1453 aa-0.75□□□□□ -2.53
CCDC88A-212ENST00000474059 FAT1Q14517 4588 aa-0.75□□□□□ -2.53
CCDC88A-212ENST00000474059 TIAM2Q8IVF5 1701 aa-0.75□□□□□ -2.53
CCDC88A-212ENST00000474059 H0YGG7 62 aa-0.76□□□□□ -2.53
CCDC88A-212ENST00000474059 HMGN2P05204 90 aaKnown RBP-0.76□□□□□ -2.53
CCDC88A-212ENST00000474059 SNHG12Q9BXW3 62 aa-0.76□□□□□ -2.53
CCDC88A-212ENST00000474059 ATP7BP35670 1465 aa-0.76□□□□□ -2.53
CCDC88A-212ENST00000474059 RGPD4Q7Z3J3 1758 aa-0.77□□□□□ -2.53
CCDC88A-212ENST00000474059 TNRC6CQ9HCJ0 1690 aaKnown RBP-0.77□□□□□ -2.53
CCDC88A-212ENST00000474059 C20orf78Q9BR46 151 aa-0.77□□□□□ -2.53
CCDC88A-212ENST00000474059 CEP162Q5TB80 1403 aa-0.78□□□□□ -2.53
CCDC88A-212ENST00000474059 A0A1B0GUT8 65 aa-0.78□□□□□ -2.53
CCDC88A-212ENST00000474059 GYPAP02724 150 aa-0.78□□□□□ -2.53
CCDC88A-212ENST00000474059 SPTBN4Q9H254 2564 aa-0.78□□□□□ -2.53
CCDC88A-212ENST00000474059 RGPD3A6NKT7 1758 aaPredicted RBP-0.78□□□□□ -2.53
CCDC88A-212ENST00000474059 POLR1AO95602 1720 aaPredicted RBP-0.78□□□□□ -2.53
CCDC88A-212ENST00000474059 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-0.78□□□□□ -2.538e-10■■■■□ 20.2
CCDC88A-212ENST00000474059 TGP01266 2768 aa-0.79□□□□□ -2.54
CCDC88A-212ENST00000474059 NEXMIFQ5QGS0 1516 aa-0.79□□□□□ -2.54
CCDC88A-212ENST00000474059 NDUFA3O95167 84 aa-0.79□□□□□ -2.54
CCDC88A-212ENST00000474059 S100A8P05109 93 aa-0.79□□□□□ -2.54
CCDC88A-212ENST00000474059 SMIM11AP58511 58 aa-0.79□□□□□ -2.54
CCDC88A-212ENST00000474059 PKIAP61925 76 aa-0.79□□□□□ -2.54
CCDC88A-212ENST00000474059 RPL38P63173 70 aaKnown RBP-0.79□□□□□ -2.54
CCDC88A-212ENST00000474059 PEA15Q15121 130 aa-0.79□□□□□ -2.54
CCDC88A-212ENST00000474059 PLGLAQ15195 96 aa-0.79□□□□□ -2.54
CCDC88A-212ENST00000474059 COX6B2Q6YFQ2 88 aa-0.79□□□□□ -2.54
CCDC88A-212ENST00000474059 GAFA1Q96PS6 74 aa-0.79□□□□□ -2.54
CCDC88A-212ENST00000474059 TROQ12816 1431 aaPredicted RBP-0.8□□□□□ -2.54
CCDC88A-212ENST00000474059 IQCF6A8MYZ5 107 aa-0.8□□□□□ -2.54
CCDC88A-212ENST00000474059 NF1P21359 2839 aa-0.8□□□□□ -2.54
CCDC88A-212ENST00000474059 AKAP13Q12802 2813 aa-0.81□□□□□ -2.54
CCDC88A-212ENST00000474059 TMEM131LA2VDJ0 1609 aa-0.81□□□□□ -2.54
CCDC88A-212ENST00000474059 FAT3Q8TDW7 4589 aa-0.81□□□□□ -2.54
CCDC88A-212ENST00000474059 KNL1Q8NG31 2342 aa-0.81□□□□□ -2.54
CCDC88A-212ENST00000474059 LTN1O94822 1766 aa-0.81□□□□□ -2.54
CCDC88A-212ENST00000474059 DOPEY1Q5JWR5 2465 aa-0.82□□□□□ -2.54
CCDC88A-212ENST00000474059 RYR3Q15413 4870 aa-0.82□□□□□ -2.54
CCDC88A-212ENST00000474059 MXRA5Q9NR99 2828 aa-0.83□□□□□ -2.54
CCDC88A-212ENST00000474059 TRANK1O15050 2925 aa-0.83□□□□□ -2.54
CCDC88A-212ENST00000474059 CYB5AP00167 134 aa-0.83□□□□□ -2.54
CCDC88A-212ENST00000474059 LYSTQ99698 3801 aa-0.83□□□□□ -2.54
CCDC88A-212ENST00000474059 DNAH6Q9C0G6 4158 aa-0.83□□□□□ -2.54
CCDC88A-212ENST00000474059 TNRC18O15417 2968 aaPredicted RBP-0.84□□□□□ -2.54
CCDC88A-212ENST00000474059 NESP48681 1621 aa-0.84□□□□□ -2.54
CCDC88A-212ENST00000474059 SONP18583 2426 aaKnown RBP-0.84□□□□□ -2.54
CCDC88A-212ENST00000474059 DOT1LQ8TEK3 1739 aa-0.84□□□□□ -2.54
CCDC88A-212ENST00000474059 USP32Q8NFA0 1604 aa-0.85□□□□□ -2.55
CCDC88A-212ENST00000474059 SCN11AQ9UI33 1791 aa-0.85□□□□□ -2.55
CCDC88A-212ENST00000474059 NBASA2RRP1 2371 aa-0.85□□□□□ -2.55
CCDC88A-212ENST00000474059 TRAV21A0A0B4J279 112 aa-0.85□□□□□ -2.55
CCDC88A-212ENST00000474059 NWD1Q149M9 1564 aa-0.85□□□□□ -2.55
CCDC88A-212ENST00000474059 SPRR2FQ96RM1 72 aa-0.85□□□□□ -2.55
CCDC88A-212ENST00000474059 CEP170BQ9Y4F5 1589 aaPredicted RBP-0.86□□□□□ -2.55
CCDC88A-212ENST00000474059 MYMXA0A1B0GTQ4 84 aa-0.86□□□□□ -2.55
CCDC88A-212ENST00000474059 WFDC9Q8NEX5 89 aa-0.86□□□□□ -2.55
CCDC88A-212ENST00000474059 ZNF831Q5JPB2 1677 aa-0.86□□□□□ -2.55
CCDC88A-212ENST00000474059 STARD9Q9P2P6 4700 aa-0.86□□□□□ -2.55
CCDC88A-212ENST00000474059 HYDINQ4G0P3 5121 aa-0.86□□□□□ -2.55
CCDC88A-212ENST00000474059 HTTP42858 3142 aa-0.87□□□□□ -2.55
CCDC88A-212ENST00000474059 PLXNC1O60486 1568 aa-0.87□□□□□ -2.55
CCDC88A-212ENST00000474059 PRRC2CQ9Y520 2896 aaKnown RBP-0.88□□□□□ -2.55
CCDC88A-212ENST00000474059 H3BNG1 76 aa-0.88□□□□□ -2.55
CCDC88A-212ENST00000474059 MT1AP04731 61 aa-0.88□□□□□ -2.55
CCDC88A-212ENST00000474059 ABCC3O15438 1527 aa-0.89□□□□□ -2.55
CCDC88A-212ENST00000474059 CCNB3Q8WWL7 1395 aa-0.89□□□□□ -2.55
CCDC88A-212ENST00000474059 RYR1P21817 5038 aa-0.89□□□□□ -2.55
CCDC88A-212ENST00000474059 NBPF19A0A087WUL8 3843 aa-0.89□□□□□ -2.55
CCDC88A-212ENST00000474059 HIVEP1P15822 2718 aa-0.89□□□□□ -2.55
CCDC88A-212ENST00000474059 K7EP34 96 aa-0.9□□□□□ -2.55
CCDC88A-212ENST00000474059 SNRPFP62306 86 aaKnown RBP-0.9□□□□□ -2.55
CCDC88A-212ENST00000474059 PYY3Q5JQD4 70 aa-0.9□□□□□ -2.55
CCDC88A-212ENST00000474059 MAP3K4Q9Y6R4 1608 aa-0.9□□□□□ -2.55
CCDC88A-212ENST00000474059 USH2AO75445 5202 aa-0.9□□□□□ -2.55
CCDC88A-212ENST00000474059 CUBNO60494 3623 aa-0.9□□□□□ -2.55
CCDC88A-212ENST00000474059 DNAH9Q9NYC9 4486 aa-0.91□□□□□ -2.55
CCDC88A-212ENST00000474059 TTC37Q6PGP7 1564 aa-0.91□□□□□ -2.55
CCDC88A-212ENST00000474059 PLIN4Q96Q06 1357 aa-0.91□□□□□ -2.55
CCDC88A-212ENST00000474059 PRO3102Q9H379 93 aa-0.91□□□□□ -2.56
CCDC88A-212ENST00000474059 Q9H521 79 aa-0.91□□□□□ -2.56
CCDC88A-212ENST00000474059 KIF14Q15058 1648 aa-0.91□□□□□ -2.56
CCDC88A-212ENST00000474059 PDE4DIPQ5VU43 2346 aa-0.91□□□□□ -2.56
CCDC88A-212ENST00000474059 PPLO60437 1756 aa-0.91□□□□□ -2.56
CCDC88A-212ENST00000474059 WIZO95785 1651 aa-0.91□□□□□ -2.56
CCDC88A-212ENST00000474059 UBR4Q5T4S7 5183 aa-0.91□□□□□ -2.56
CCDC88A-212ENST00000474059 NCOA2Q15596 1464 aa-0.92□□□□□ -2.56
CCDC88A-212ENST00000474059 CEBPZOSA8MTT3 80 aa-0.92□□□□□ -2.56
CCDC88A-212ENST00000474059 C3orf79P0CE67 100 aa-0.92□□□□□ -2.56
CCDC88A-212ENST00000474059 LINC00158P58513 81 aa-0.92□□□□□ -2.56
CCDC88A-212ENST00000474059 S100A16Q96FQ6 103 aaKnown RBP-0.92□□□□□ -2.56
CCDC88A-212ENST00000474059 RABAC1Q9UI14 185 aa-0.92□□□□□ -2.56
CCDC88A-212ENST00000474059 AKAP9Q99996 3911 aa-0.93□□□□□ -2.56
CCDC88A-212ENST00000474059 PKHD1L1Q86WI1 4243 aa-0.93□□□□□ -2.56
CCDC88A-212ENST00000474059 ARFGEF2Q9Y6D5 1785 aa-0.93□□□□□ -2.56
CCDC88A-212ENST00000474059 URB2Q14146 1524 aaKnown RBP-0.93□□□□□ -2.56
CCDC88A-212ENST00000474059 MAGI3Q5TCQ9 1506 aa-0.93□□□□□ -2.56
CCDC88A-212ENST00000474059 NDUFB1O75438 58 aa-0.93□□□□□ -2.56
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms