RNA–Protein interactions for RNA: ENST00000466288.1

CXCR4-203, Transcript of C-X-C motif chemokine receptor 4, humanhuman

TSL 1 (best)

Gene CXCR4, Length 1,485 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-203ENST00000466288 COX7B2Q8TF08 81 aa8.55□□□□□ -1.04
CXCR4-203ENST00000466288 PRO1854Q9UHT4 67 aa8.55□□□□□ -1.04
CXCR4-203ENST00000466288 MUSTN1Q8IVN3 82 aa8.54□□□□□ -1.04
CXCR4-203ENST00000466288 SPCS1Q9Y6A9 102 aa8.54□□□□□ -1.04
CXCR4-203ENST00000466288 A4D1N5 150 aa8.53□□□□□ -1.04
CXCR4-203ENST00000466288 K7ERJ3 54 aa8.53□□□□□ -1.04
CXCR4-203ENST00000466288 CFC1BP0CG36 223 aa8.53□□□□□ -1.04
CXCR4-203ENST00000466288 CFC1P0CG37 223 aa8.53□□□□□ -1.04
CXCR4-203ENST00000466288 SPAG11BQ08648 103 aa8.53□□□□□ -1.04
CXCR4-203ENST00000466288 FAM19A5Q7Z5A7 132 aaPredicted RBP8.53□□□□□ -1.04
CXCR4-203ENST00000466288 C5orf38Q86SI9 138 aa8.53□□□□□ -1.04
CXCR4-203ENST00000466288 PRSS2P07478 247 aa8.52□□□□□ -1.05
CXCR4-203ENST00000466288 CXCL5P42830 114 aa8.52□□□□□ -1.05
CXCR4-203ENST00000466288 TLX1NBP0CAT3 122 aa8.51□□□□□ -1.05
CXCR4-203ENST00000466288 Q8IZM0 81 aa8.51□□□□□ -1.05
CXCR4-203ENST00000466288 TRBV20-1A0A075B6N2 111 aa8.51□□□□□ -1.05
CXCR4-203ENST00000466288 CRCT1Q9UGL9 99 aa8.51□□□□□ -1.05
CXCR4-203ENST00000466288 UBE2BP63146 152 aa8.5□□□□□ -1.05
CXCR4-203ENST00000466288 MEIG1Q5JSS6 88 aa8.5□□□□□ -1.05
CXCR4-203ENST00000466288 ADAMTSL4-AS1Q5T5F5 129 aa8.5□□□□□ -1.05
CXCR4-203ENST00000466288 C10orf25Q5T742 122 aa8.5□□□□□ -1.05
CXCR4-203ENST00000466288 ERG28Q9UKR5 140 aa8.5□□□□□ -1.05
CXCR4-203ENST00000466288 M0QXV9 152 aa8.49□□□□□ -1.05
CXCR4-203ENST00000466288 F8WDY8 70 aa8.48□□□□□ -1.05
CXCR4-203ENST00000466288 ZNF861PO60384 105 aa8.48□□□□□ -1.05
CXCR4-203ENST00000466288 C6orf226Q5I0X4 101 aa8.48□□□□□ -1.05
CXCR4-203ENST00000466288 LINC00308Q8TCZ7 52 aa8.48□□□□□ -1.05
CXCR4-203ENST00000466288 A0A087X002 238 aa8.47□□□□□ -1.05
CXCR4-203ENST00000466288 F8W1H4 67 aa8.47□□□□□ -1.05
CXCR4-203ENST00000466288 GAGE2EQ4V326 116 aa8.47□□□□□ -1.05
CXCR4-203ENST00000466288 C6orf48Q9UBA6 75 aa8.47□□□□□ -1.05
CXCR4-203ENST00000466288 GAGE2DQ9UEU5 116 aa8.47□□□□□ -1.05
CXCR4-203ENST00000466288 COX17Q14061 63 aa8.46□□□□□ -1.05
CXCR4-203ENST00000466288 UNQ6190/PRO20217Q6UXQ8 127 aa8.46□□□□□ -1.05
CXCR4-203ENST00000466288 TOMM7Q9P0U1 55 aa8.46□□□□□ -1.05
CXCR4-203ENST00000466288 TRBV30A0A0K0K1B3 111 aa8.45□□□□□ -1.06
CXCR4-203ENST00000466288 NAA38Q9BRA0 125 aaKnown RBP8.45□□□□□ -1.06
CXCR4-203ENST00000466288 COX6CP09669 75 aa8.45□□□□□ -1.06
CXCR4-203ENST00000466288 RETNLBQ9BQ08 111 aa8.45□□□□□ -1.06
CXCR4-203ENST00000466288 CDIP1Q9H305 208 aa8.45□□□□□ -1.06
CXCR4-203ENST00000466288 CKS1BP61024 79 aa8.44□□□□□ -1.06
CXCR4-203ENST00000466288 TPRXLQ17RH7 258 aa8.44□□□□□ -1.06
CXCR4-203ENST00000466288 LOC107984156A0A0G2JMH3 177 aa8.43□□□□□ -1.06
CXCR4-203ENST00000466288 ARL17AQ8IVW1 177 aa8.43□□□□□ -1.06
CXCR4-203ENST00000466288 TYMSOSQ8TAI1 123 aa8.43□□□□□ -1.06
CXCR4-203ENST00000466288 TRAV13-2A0A0B4J235 113 aa8.42□□□□□ -1.06
CXCR4-203ENST00000466288 SCGB1C2P0DMR2 95 aa8.42□□□□□ -1.06
CXCR4-203ENST00000466288 PSMB2P49721 201 aa8.42□□□□□ -1.06
CXCR4-203ENST00000466288 KIAA0087Q14695 138 aa8.42□□□□□ -1.06
CXCR4-203ENST00000466288 C9orf129Q5T035 196 aaKnown RBP8.42□□□□□ -1.06
CXCR4-203ENST00000466288 CRYGAP11844 174 aa8.41□□□□□ -1.06
CXCR4-203ENST00000466288 LINC00158P58513 81 aa8.41□□□□□ -1.06
CXCR4-203ENST00000466288 EIF4EBP3O60516 100 aaPredicted RBP8.4□□□□□ -1.06
CXCR4-203ENST00000466288 Q1RN00 199 aa8.4□□□□□ -1.06
CXCR4-203ENST00000466288 MIR7-3HGQ8N6C7 128 aa8.4□□□□□ -1.06
CXCR4-203ENST00000466288 LOC100996750A0A140TA64 210 aa8.39□□□□□ -1.07
CXCR4-203ENST00000466288 KRTAP4-6Q9BYQ5 205 aa8.39□□□□□ -1.07
CXCR4-203ENST00000466288 NDUFC2-KCTD14E9PQ53 114 aa8.38□□□□□ -1.07
CXCR4-203ENST00000466288 H3BMG7 143 aa8.38□□□□□ -1.07
CXCR4-203ENST00000466288 K7ERU9 68 aa8.38□□□□□ -1.07
CXCR4-203ENST00000466288 ATXN8Q156A1 80 aa8.38□□□□□ -1.07
CXCR4-203ENST00000466288 SOSTDC1Q6X4U4 206 aa8.38□□□□□ -1.07
CXCR4-203ENST00000466288 DAND5Q8N907 189 aa8.38□□□□□ -1.07
CXCR4-203ENST00000466288 IGLV7-46A0A075B6I9 117 aa8.38□□□□□ -1.07
CXCR4-203ENST00000466288 NDUFC2O95298 119 aa8.38□□□□□ -1.07
CXCR4-203ENST00000466288 SND1-IT1Q9HBX3 110 aa8.38□□□□□ -1.07
CXCR4-203ENST00000466288 NPC2P61916 151 aa8.37□□□□□ -1.07
CXCR4-203ENST00000466288 KRTAP13-2Q52LG2 175 aa8.37□□□□□ -1.07
CXCR4-203ENST00000466288 ANAPC11Q9NYG5 84 aa8.37□□□□□ -1.07
CXCR4-203ENST00000466288 A0A0U1RRA0 63 aa8.36□□□□□ -1.07
CXCR4-203ENST00000466288 TCL1BO95988 128 aa8.36□□□□□ -1.07
CXCR4-203ENST00000466288 OCIAD2Q56VL3 154 aa8.36□□□□□ -1.07
CXCR4-203ENST00000466288 PRO0461Q9UI25 63 aa8.36□□□□□ -1.07
CXCR4-203ENST00000466288 C22orf24Q9Y442 160 aa8.36□□□□□ -1.07
CXCR4-203ENST00000466288 J3QR89 54 aa8.35□□□□□ -1.07
CXCR4-203ENST00000466288 TRIAP1O43715 76 aa8.35□□□□□ -1.07
CXCR4-203ENST00000466288 C2orf82Q6UX34 121 aa8.35□□□□□ -1.07
CXCR4-203ENST00000466288 H7C2G1 150 aa8.34□□□□□ -1.07
CXCR4-203ENST00000466288 PFN2P35080 140 aa8.34□□□□□ -1.07
CXCR4-203ENST00000466288 RPL28P46779 137 aaKnown RBP8.34□□□□□ -1.07
CXCR4-203ENST00000466288 LINC01547P58512 204 aaPredicted RBP8.34□□□□□ -1.07
CXCR4-203ENST00000466288 LINC00304Q8N9R0 145 aa8.33□□□□□ -1.08
CXCR4-203ENST00000466288 BCE1O60756 84 aa8.32□□□□□ -1.08
CXCR4-203ENST00000466288 H0YGX0 51 aa8.31□□□□□ -1.08
CXCR4-203ENST00000466288 LST1O00453 97 aa8.31□□□□□ -1.08
CXCR4-203ENST00000466288 IGKV2-28A0A075B6P5 120 aa8.3□□□□□ -1.08
CXCR4-203ENST00000466288 H3BT86 120 aa8.3□□□□□ -1.08
CXCR4-203ENST00000466288 IGKV2D-28P01615 120 aa8.3□□□□□ -1.08
CXCR4-203ENST00000466288 TRBV10-2A0A0K0K1G8 114 aa8.29□□□□□ -1.08
CXCR4-203ENST00000466288 TRACP01848 142 aa8.29□□□□□ -1.08
CXCR4-203ENST00000466288 KRTAP4-1Q9BYQ7 146 aa8.29□□□□□ -1.08
CXCR4-203ENST00000466288 XAGE1AQ9HD64 81 aa8.29□□□□□ -1.08
CXCR4-203ENST00000466288 SLC25A20O43772 301 aa8.28□□□□□ -1.08
CXCR4-203ENST00000466288 FAM229BQ4G0N7 80 aa8.28□□□□□ -1.08
CXCR4-203ENST00000466288 MRPL55Q7Z7F7 128 aaKnown RBP8.28□□□□□ -1.08
CXCR4-203ENST00000466288 TEN1Q86WV5 123 aa8.28□□□□□ -1.08
CXCR4-203ENST00000466288 LINC00337Q8N6G1 96 aa8.28□□□□□ -1.08
CXCR4-203ENST00000466288 TMEM126AQ9H061 195 aa8.28□□□□□ -1.08
CXCR4-203ENST00000466288 KRTAP13-1Q8IUC0 172 aa8.27□□□□□ -1.09
CXCR4-203ENST00000466288 ANKRD29Q8N6D5 301 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms