RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 LOC107984156A0A0G2JMH3 177 aa1.77□□□□□ -2.13
VPS41-210ENST00000462429 K7EP13 123 aa1.77□□□□□ -2.13
VPS41-210ENST00000462429 NDUFA1O15239 70 aa1.77□□□□□ -2.13
VPS41-210ENST00000462429 IGHV3-30P01768 117 aa1.77□□□□□ -2.13
VPS41-210ENST00000462429 IGHV3-30-5P0DP03 117 aa1.77□□□□□ -2.13
VPS41-210ENST00000462429 FXYD2P54710 66 aa1.77□□□□□ -2.13
VPS41-210ENST00000462429 KRTAP12-4P60329 112 aa1.77□□□□□ -2.13
VPS41-210ENST00000462429 CKS1BP61024 79 aa1.77□□□□□ -2.13
VPS41-210ENST00000462429 COX17Q14061 63 aa1.77□□□□□ -2.13
VPS41-210ENST00000462429 ATXN8Q156A1 80 aa1.77□□□□□ -2.13
VPS41-210ENST00000462429 MIAQ16674 131 aa1.77□□□□□ -2.13
VPS41-210ENST00000462429 DEFB135Q30KP9 77 aa1.77□□□□□ -2.13
VPS41-210ENST00000462429 ARL17AQ8IVW1 177 aa1.77□□□□□ -2.13
VPS41-210ENST00000462429 CDKN2A-AS1Q9UH64 79 aa1.77□□□□□ -2.13
VPS41-210ENST00000462429 CENPEQ02224 2701 aa1.77□□□□□ -2.13
VPS41-210ENST00000462429 FLNAP21333 2647 aaKnown RBP1.77□□□□□ -2.13
VPS41-210ENST00000462429 MAP1AP78559 2803 aaPredicted RBP1.76□□□□□ -2.13
VPS41-210ENST00000462429 KMT2BQ9UMN6 2715 aaPredicted RBP1.76□□□□□ -2.13
VPS41-210ENST00000462429 IGHV3-64A0A075B6Q5 118 aa1.76□□□□□ -2.13
VPS41-210ENST00000462429 TRBV30A0A0K0K1B3 111 aa1.76□□□□□ -2.13
VPS41-210ENST00000462429 IBA57-AS1B1ANH7 110 aa1.76□□□□□ -2.13
VPS41-210ENST00000462429 LST1O00453 97 aa1.76□□□□□ -2.13
VPS41-210ENST00000462429 CRPP02741 224 aa1.76□□□□□ -2.13
VPS41-210ENST00000462429 ANGP03950 147 aaKnown RBP1.76□□□□□ -2.13
VPS41-210ENST00000462429 PRM2P04554 102 aa1.76□□□□□ -2.13
VPS41-210ENST00000462429 SPINK8P0C7L1 97 aa1.76□□□□□ -2.13
VPS41-210ENST00000462429 LELP1Q5T871 98 aa1.76□□□□□ -2.13
VPS41-210ENST00000462429 KRTAP5-7Q6L8G8 165 aa1.76□□□□□ -2.13
VPS41-210ENST00000462429 Q6ZUT4 128 aa1.76□□□□□ -2.13
VPS41-210ENST00000462429 MUSTN1Q8IVN3 82 aa1.76□□□□□ -2.13
VPS41-210ENST00000462429 SBSPONQ8IVN8 264 aa1.76□□□□□ -2.13
VPS41-210ENST00000462429 C15orf53Q8NAA6 179 aa1.76□□□□□ -2.13
VPS41-210ENST00000462429 COX7B2Q8TF08 81 aa1.76□□□□□ -2.13
VPS41-210ENST00000462429 DEFB104AQ8WTQ1 72 aa1.76□□□□□ -2.13
VPS41-210ENST00000462429 VPS25Q9BRG1 176 aa1.76□□□□□ -2.13
VPS41-210ENST00000462429 WFDC10AQ9H1F0 79 aa1.76□□□□□ -2.13
VPS41-210ENST00000462429 C11orf68Q9H3H3 251 aaKnown RBP1.76□□□□□ -2.13
VPS41-210ENST00000462429 HELZ2Q9BYK8 2649 aaKnown RBP1.76□□□□□ -2.13
VPS41-210ENST00000462429 FBN2P35556 2912 aa1.75□□□□□ -2.13
VPS41-210ENST00000462429 ACANP16112 2415 aa1.75□□□□□ -2.13
VPS41-210ENST00000462429 IGKV3OR2-268A0A0C4DH90 116 aa1.75□□□□□ -2.13
VPS41-210ENST00000462429 A0A0G2JQZ4 141 aa1.75□□□□□ -2.13
VPS41-210ENST00000462429 LINC00959A0A1B0GUT2 108 aa1.75□□□□□ -2.13
VPS41-210ENST00000462429 A8MUN3 132 aa1.75□□□□□ -2.13
VPS41-210ENST00000462429 H0YGX0 51 aa1.75□□□□□ -2.13
VPS41-210ENST00000462429 H3BMG7 143 aa1.75□□□□□ -2.13
VPS41-210ENST00000462429 DNAL4O96015 105 aa1.75□□□□□ -2.13
VPS41-210ENST00000462429 LINC00158P58513 81 aa1.75□□□□□ -2.13
VPS41-210ENST00000462429 OCIAD2Q56VL3 154 aa1.75□□□□□ -2.13
VPS41-210ENST00000462429 Q8IZM0 81 aa1.75□□□□□ -2.13
VPS41-210ENST00000462429 SMCR5Q8TEV8 140 aa1.75□□□□□ -2.13
VPS41-210ENST00000462429 CARD19Q96LW7 228 aa1.75□□□□□ -2.13
VPS41-210ENST00000462429 TOMM7Q9P0U1 55 aa1.75□□□□□ -2.13
VPS41-210ENST00000462429 PKIGQ9Y2B9 76 aa1.75□□□□□ -2.13
VPS41-210ENST00000462429 CHD6Q8TD26 2715 aa1.75□□□□□ -2.13
VPS41-210ENST00000462429 CELSR1Q9NYQ6 3014 aa1.75□□□□□ -2.13
VPS41-210ENST00000462429 BAHCC1Q9P281 2608 aa1.75□□□□□ -2.13
VPS41-210ENST00000462429 CSMD1Q96PZ7 3565 aa1.75□□□□□ -2.13
VPS41-210ENST00000462429 MXRA5Q9NR99 2828 aa1.75□□□□□ -2.13
VPS41-210ENST00000462429 FN1P02751 2386 aaKnown RBP1.74□□□□□ -2.13
VPS41-210ENST00000462429 UNC79Q9P2D8 2635 aa1.74□□□□□ -2.13
VPS41-210ENST00000462429 SVEP1Q4LDE5 3571 aa1.74□□□□□ -2.13
VPS41-210ENST00000462429 H3BT86 120 aa1.74□□□□□ -2.13
VPS41-210ENST00000462429 NDUFC2O95298 119 aa1.74□□□□□ -2.13
VPS41-210ENST00000462429 IGHV3-33P01772 117 aa1.74□□□□□ -2.13
VPS41-210ENST00000462429 LINC00694P0DN24 101 aa1.74□□□□□ -2.13
VPS41-210ENST00000462429 HTN3P15516 51 aa1.74□□□□□ -2.13
VPS41-210ENST00000462429 CCL18P55774 89 aa1.74□□□□□ -2.13
VPS41-210ENST00000462429 COX6A2Q02221 97 aa1.74□□□□□ -2.13
VPS41-210ENST00000462429 DEFB121Q5J5C9 76 aa1.74□□□□□ -2.13
VPS41-210ENST00000462429 TEN1Q86WV5 123 aa1.74□□□□□ -2.13
VPS41-210ENST00000462429 LINC00269Q8N2A0 174 aa1.74□□□□□ -2.13
VPS41-210ENST00000462429 LINC00308Q8TCZ7 52 aa1.74□□□□□ -2.13
VPS41-210ENST00000462429 ZNF625Q96I27 306 aaPredicted RBP1.74□□□□□ -2.13
VPS41-210ENST00000462429 TMEM126AQ9H061 195 aa1.74□□□□□ -2.13
VPS41-210ENST00000462429 PSORS1C2Q9UIG4 136 aa1.74□□□□□ -2.13
VPS41-210ENST00000462429 KLK5Q9Y337 293 aaPredicted RBP1.74□□□□□ -2.13
VPS41-210ENST00000462429 PDZD2O15018 2839 aa1.74□□□□□ -2.13
VPS41-210ENST00000462429 ZANQ9Y493 2812 aa1.74□□□□□ -2.13
VPS41-210ENST00000462429 MTORP42345 2549 aa1.74□□□□□ -2.13
VPS41-210ENST00000462429 FASNP49327 2511 aaKnown RBP1.74□□□□□ -2.13
VPS41-210ENST00000462429 ITPR2Q14571 2701 aa1.73□□□□□ -2.13
VPS41-210ENST00000462429 DEFB131BA0A096LNP1 70 aa1.73□□□□□ -2.13
VPS41-210ENST00000462429 A0A096LPF7 62 aa1.73□□□□□ -2.13
VPS41-210ENST00000462429 TRAV10A0A0B4J240 114 aa1.73□□□□□ -2.13
VPS41-210ENST00000462429 TRBV10-2A0A0K0K1G8 114 aa1.73□□□□□ -2.13
VPS41-210ENST00000462429 A0A1B0GX51 115 aa1.73□□□□□ -2.13
VPS41-210ENST00000462429 H7C2G1 150 aa1.73□□□□□ -2.13
VPS41-210ENST00000462429 K7ERJ3 54 aa1.73□□□□□ -2.13
VPS41-210ENST00000462429 TRACP01848 142 aa1.73□□□□□ -2.13
VPS41-210ENST00000462429 ACYP1P07311 99 aa1.73□□□□□ -2.13
VPS41-210ENST00000462429 PMAIP1Q13794 54 aa1.73□□□□□ -2.13
VPS41-210ENST00000462429 ETDBQ3ZM63 59 aa1.73□□□□□ -2.13
VPS41-210ENST00000462429 S100A7L2Q5SY68 101 aa1.73□□□□□ -2.13
VPS41-210ENST00000462429 LYPD5Q6UWN5 251 aa1.73□□□□□ -2.13
VPS41-210ENST00000462429 C2orf82Q6UX34 121 aa1.73□□□□□ -2.13
VPS41-210ENST00000462429 C5orf38Q86SI9 138 aa1.73□□□□□ -2.13
VPS41-210ENST00000462429 ANKRD29Q8N6D5 301 aa1.73□□□□□ -2.13
VPS41-210ENST00000462429 OR13C6PQ8NH95 151 aa1.73□□□□□ -2.13
VPS41-210ENST00000462429 PPDPFLQ8WWR9 84 aa1.73□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms