RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 LOC110117498A0A087WWA1 95 aa10.78□□□□□ -0.68
PCDH1-203ENST00000394536 ELOF1P60002 83 aaKnown RBP10.78□□□□□ -0.68
PCDH1-203ENST00000394536 LRCOL1A6NCL2 159 aa10.78□□□□□ -0.68
PCDH1-203ENST00000394536 PKIGQ9Y2B9 76 aa10.78□□□□□ -0.68
PCDH1-203ENST00000394536 VPREB1P12018 145 aa10.77□□□□□ -0.68
PCDH1-203ENST00000394536 Q6ZRP5 223 aa10.77□□□□□ -0.68
PCDH1-203ENST00000394536 VWFP04275 2813 aa10.77□□□□□ -0.69
PCDH1-203ENST00000394536 NSD1Q96L73 2696 aaPredicted RBP10.77□□□□□ -0.69
PCDH1-203ENST00000394536 C1orf137Q5JT78 98 aa10.77□□□□□ -0.69
PCDH1-203ENST00000394536 BRK1Q8WUW1 75 aa10.77□□□□□ -0.69
PCDH1-203ENST00000394536 RPS28P62857 69 aaKnown RBP10.76□□□□□ -0.69
PCDH1-203ENST00000394536 CXCL6P80162 114 aa10.76□□□□□ -0.69
PCDH1-203ENST00000394536 DEFB116Q30KQ4 102 aa10.76□□□□□ -0.69
PCDH1-203ENST00000394536 C7orf33Q8WU49 177 aa10.76□□□□□ -0.69
PCDH1-203ENST00000394536 PRR34Q9NV39 138 aa10.76□□□□□ -0.69
PCDH1-203ENST00000394536 TMEM254Q8TBM7 123 aa10.76□□□□□ -0.69
PCDH1-203ENST00000394536 LINC00167Q96N53 147 aa10.75□□□□□ -0.69
PCDH1-203ENST00000394536 WFDC13Q8IUB5 93 aa10.74□□□□□ -0.69
PCDH1-203ENST00000394536 DHRS4-AS1Q9P1J3 65 aa10.73□□□□□ -0.69
PCDH1-203ENST00000394536 SERP1Q9Y6X1 66 aa10.73□□□□□ -0.69
PCDH1-203ENST00000394536 GVQW2A0A096LPI5 108 aaPredicted RBP10.71□□□□□ -0.69
PCDH1-203ENST00000394536 NDUFC1O43677 76 aa10.71□□□□□ -0.69
PCDH1-203ENST00000394536 A0A0U1RQV1 116 aa10.7□□□□□ -0.7
PCDH1-203ENST00000394536 ST20-AS1Q8NBB2 130 aa10.7□□□□□ -0.7
PCDH1-203ENST00000394536 SMIM26A0A096LP01 95 aa10.69□□□□□ -0.7
PCDH1-203ENST00000394536 FAM168BA1KXE4 195 aa10.69□□□□□ -0.7
PCDH1-203ENST00000394536 SERTAD4-AS1Q5TG53 156 aa10.69□□□□□ -0.7
PCDH1-203ENST00000394536 LINC00528Q8N1L1 170 aa10.68□□□□□ -0.7
PCDH1-203ENST00000394536 C15orf56Q8N910 161 aa10.67□□□□□ -0.7
PCDH1-203ENST00000394536 TENM1Q9UKZ4 2725 aa10.67□□□□□ -0.7
PCDH1-203ENST00000394536 UBE2AP49459 152 aa10.66□□□□□ -0.7
PCDH1-203ENST00000394536 LINC01556Q5JQF7 62 aa10.66□□□□□ -0.7
PCDH1-203ENST00000394536 TRBV7-6A0A0J9YX20 115 aa10.66□□□□□ -0.7
PCDH1-203ENST00000394536 TRBV7-4A0A0J9YYF1 115 aa10.66□□□□□ -0.7
PCDH1-203ENST00000394536 PRYO14603 147 aa10.66□□□□□ -0.7
PCDH1-203ENST00000394536 MP68P56378 58 aa10.65□□□□□ -0.7
PCDH1-203ENST00000394536 PRLHP81277 87 aa10.65□□□□□ -0.7
PCDH1-203ENST00000394536 SMIM29Q86T20 159 aa10.65□□□□□ -0.7
PCDH1-203ENST00000394536 H7BZZ5 65 aa10.65□□□□□ -0.71
PCDH1-203ENST00000394536 MRPL55Q7Z7F7 128 aaKnown RBP10.64□□□□□ -0.71
PCDH1-203ENST00000394536 H0Y9J4 135 aa10.63□□□□□ -0.71
PCDH1-203ENST00000394536 A0A0G2JQZ4 141 aa10.63□□□□□ -0.71
PCDH1-203ENST00000394536 A0A1W2PNN7 141 aa10.63□□□□□ -0.71
PCDH1-203ENST00000394536 A0A087WSZ3 146 aa10.61□□□□□ -0.71
PCDH1-203ENST00000394536 REG3GQ6UW15 175 aa10.6□□□□□ -0.71
PCDH1-203ENST00000394536 Q8N377 158 aa10.6□□□□□ -0.71
PCDH1-203ENST00000394536 PDZD2O15018 2839 aa10.59□□□□□ -0.71
PCDH1-203ENST00000394536 NDUFS5O43920 106 aa10.59□□□□□ -0.71
PCDH1-203ENST00000394536 OXTP01178 125 aa10.59□□□□□ -0.71
PCDH1-203ENST00000394536 KRTAP10-11P60412 298 aa10.59□□□□□ -0.71
PCDH1-203ENST00000394536 NBPF19A0A087WUL8 3843 aa10.59□□□□□ -0.71
PCDH1-203ENST00000394536 Q6ZRX8 168 aa10.59□□□□□ -0.71
PCDH1-203ENST00000394536 LINC00474Q9P2X8 69 aa10.59□□□□□ -0.71
PCDH1-203ENST00000394536 BCE1O60756 84 aa10.58□□□□□ -0.72
PCDH1-203ENST00000394536 KLKP1Q107X0 134 aa10.57□□□□□ -0.72
PCDH1-203ENST00000394536 CASC10Q5T4H9 136 aa10.57□□□□□ -0.72
PCDH1-203ENST00000394536 CDK2AP2O75956 126 aa10.57□□□□□ -0.72
PCDH1-203ENST00000394536 TENM4Q6N022 2769 aa10.57□□□□□ -0.72
PCDH1-203ENST00000394536 H3BNG1 76 aa10.56□□□□□ -0.72
PCDH1-203ENST00000394536 ATP5EP56381 51 aaPredicted RBP10.56□□□□□ -0.72
PCDH1-203ENST00000394536 LINC00588Q9Y4M8 146 aa10.56□□□□□ -0.72
PCDH1-203ENST00000394536 WIPF1O43516 503 aa10.55□□□□□ -0.72
PCDH1-203ENST00000394536 LINC00208Q96KT6 92 aa10.55□□□□□ -0.72
PCDH1-203ENST00000394536 KCNQ1DNQ9H478 68 aa10.55□□□□□ -0.72
PCDH1-203ENST00000394536 LINC00336Q6ZUF6 198 aa10.54□□□□□ -0.72
PCDH1-203ENST00000394536 Q8NBF4 154 aa10.53□□□□□ -0.72
PCDH1-203ENST00000394536 IGKV4-1P06312 121 aa10.53□□□□□ -0.72
PCDH1-203ENST00000394536 NDUFB1O75438 58 aa10.52□□□□□ -0.73
PCDH1-203ENST00000394536 ERC2-IT1O76042 136 aa10.51□□□□□ -0.73
PCDH1-203ENST00000394536 KRTAP24-1Q3LI83 254 aa10.51□□□□□ -0.73
PCDH1-203ENST00000394536 Q9BRP9 147 aa10.51□□□□□ -0.73
PCDH1-203ENST00000394536 OTOGQ6ZRI0 2925 aa10.51□□□□□ -0.73
PCDH1-203ENST00000394536 LINC00476Q8WZB0 136 aa10.5□□□□□ -0.73
PCDH1-203ENST00000394536 TENM3Q9P273 2699 aa10.5□□□□□ -0.73
PCDH1-203ENST00000394536 K7EQZ3 153 aa10.5□□□□□ -0.73
PCDH1-203ENST00000394536 Q5XG85 94 aa10.49□□□□□ -0.73
PCDH1-203ENST00000394536 PKD1L1Q8TDX9 2849 aa10.49□□□□□ -0.73
PCDH1-203ENST00000394536 A0A1W2PNM2 257 aa10.49□□□□□ -0.73
PCDH1-203ENST00000394536 PSPHP1O15172 72 aa10.49□□□□□ -0.73
PCDH1-203ENST00000394536 STAB2Q8WWQ8 2551 aa10.48□□□□□ -0.73
PCDH1-203ENST00000394536 F8WDY8 70 aa10.48□□□□□ -0.73
PCDH1-203ENST00000394536 B9D2Q9BPU9 175 aa10.48□□□□□ -0.73
PCDH1-203ENST00000394536 FBN1P35555 2871 aaKnown RBP10.48□□□□□ -0.73
PCDH1-203ENST00000394536 IGLV1-50A0A075B6I6 118 aa10.48□□□□□ -0.73
PCDH1-203ENST00000394536 HCG22E2RYF7 251 aa10.48□□□□□ -0.73
PCDH1-203ENST00000394536 DNAH10OSP0CZ25 163 aa10.48□□□□□ -0.73
PCDH1-203ENST00000394536 RPL37AP61513 92 aaKnown RBP10.48□□□□□ -0.73
PCDH1-203ENST00000394536 IGLV9-49A0A0B4J1Y8 123 aa10.47□□□□□ -0.73
PCDH1-203ENST00000394536 CHTF8P0CG12 524 aa10.46□□□□□ -0.73
PCDH1-203ENST00000394536 PRO0628Q9UI54 55 aa10.46□□□□□ -0.74
PCDH1-203ENST00000394536 KMT2BQ9UMN6 2715 aaPredicted RBP10.43□□□□□ -0.74
PCDH1-203ENST00000394536 CASC2Q6XLA1 102 aa10.42□□□□□ -0.74
PCDH1-203ENST00000394536 PHF5AQ7RTV0 110 aaKnown RBP10.42□□□□□ -0.74
PCDH1-203ENST00000394536 C14orf177Q52M58 125 aa10.41□□□□□ -0.74
PCDH1-203ENST00000394536 V9GYY9 64 aa10.41□□□□□ -0.74
PCDH1-203ENST00000394536 SEC61GP60059 68 aa10.4□□□□□ -0.75
PCDH1-203ENST00000394536 KRTAP26-1Q6PEX3 210 aa10.39□□□□□ -0.75
PCDH1-203ENST00000394536 OCR1Q9BZK8 76 aa10.38□□□□□ -0.75
PCDH1-203ENST00000394536 IGLV5-48A0A075B6I7 105 aa10.38□□□□□ -0.75
PCDH1-203ENST00000394536 C1orf195Q5TG92 126 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms