RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 A0A096LNJ9 63 aa5□□□□□ -1.61
LIMCH1-201ENST00000313860 P0C880 135 aa5□□□□□ -1.61
LIMCH1-201ENST00000313860 SPTA1P02549 2419 aa4.99□□□□□ -1.61
LIMCH1-201ENST00000313860 MKI67P46013 3256 aaKnown RBP4.99□□□□□ -1.61
LIMCH1-201ENST00000313860 VCANP13611 3396 aa4.99□□□□□ -1.61
LIMCH1-201ENST00000313860 TECTAO75443 2155 aa4.99□□□□□ -1.61
LIMCH1-201ENST00000313860 ODF3L2Q3SX64 289 aa4.98□□□□□ -1.61
LIMCH1-201ENST00000313860 PTPRBP23467 1997 aa4.98□□□□□ -1.61
LIMCH1-201ENST00000313860 PCNX1Q96RV3 2341 aa4.98□□□□□ -1.61
LIMCH1-201ENST00000313860 Q5XG85 94 aa4.98□□□□□ -1.61
LIMCH1-201ENST00000313860 RPL37P61927 97 aaKnown RBP4.98□□□□□ -1.61
LIMCH1-201ENST00000313860 ZDBF2Q9HCK1 2354 aa4.98□□□□□ -1.61
LIMCH1-201ENST00000313860 Q5VV11 94 aa4.97□□□□□ -1.61
LIMCH1-201ENST00000313860 SMR3BP02814 79 aaPredicted RBP4.97□□□□□ -1.61
LIMCH1-201ENST00000313860 FHL3Q13643 280 aa4.97□□□□□ -1.61
LIMCH1-201ENST00000313860 M0QZ58 72 aa4.96□□□□□ -1.61
LIMCH1-201ENST00000313860 ROS1P08922 2347 aa4.96□□□□□ -1.62
LIMCH1-201ENST00000313860 ADAMTS20P59510 1910 aa4.96□□□□□ -1.62
LIMCH1-201ENST00000313860 PTPRSQ13332 1948 aa4.96□□□□□ -1.62
LIMCH1-201ENST00000313860 Q8N377 158 aa4.96□□□□□ -1.62
LIMCH1-201ENST00000313860 Q8NDZ9 215 aa4.95□□□□□ -1.62
LIMCH1-201ENST00000313860 C10orf142B7Z368 130 aa4.95□□□□□ -1.62
LIMCH1-201ENST00000313860 CEP192Q8TEP8 1941 aa4.95□□□□□ -1.62
LIMCH1-201ENST00000313860 NBASA2RRP1 2371 aa4.94□□□□□ -1.62
LIMCH1-201ENST00000313860 WDR87Q6ZQQ6 2873 aa4.94□□□□□ -1.62
LIMCH1-201ENST00000313860 NBEAQ8NFP9 2946 aa4.94□□□□□ -1.62
LIMCH1-201ENST00000313860 LTBP2Q14767 1821 aa4.94□□□□□ -1.62
LIMCH1-201ENST00000313860 KRTAP25-1Q3LHN0 102 aa4.94□□□□□ -1.62
LIMCH1-201ENST00000313860 FBXL19-AS1Q494R0 122 aa4.94□□□□□ -1.62
LIMCH1-201ENST00000313860 SZT2Q5T011 3432 aa4.94□□□□□ -1.62
LIMCH1-201ENST00000313860 CHD9Q3L8U1 2897 aa4.93□□□□□ -1.62
LIMCH1-201ENST00000313860 CNFNQ9BYD5 112 aa4.93□□□□□ -1.62
LIMCH1-201ENST00000313860 ACACAQ13085 2346 aa4.93□□□□□ -1.62
LIMCH1-201ENST00000313860 CNOT1A5YKK6 2376 aaKnown RBP4.93□□□□□ -1.62
LIMCH1-201ENST00000313860 TRANK1O15050 2925 aa4.92□□□□□ -1.62
LIMCH1-201ENST00000313860 A0A1W2PNU3 283 aaPredicted RBP4.91□□□□□ -1.62
LIMCH1-201ENST00000313860 ADM2Q7Z4H4 148 aa4.91□□□□□ -1.62
LIMCH1-201ENST00000313860 CSPG4Q6UVK1 2322 aa4.91□□□□□ -1.62
LIMCH1-201ENST00000313860 GVQW2A0A096LPI5 108 aaPredicted RBP4.91□□□□□ -1.62
LIMCH1-201ENST00000313860 FRYQ5TBA9 3013 aa4.91□□□□□ -1.62
LIMCH1-201ENST00000313860 PCSK5Q92824 1860 aa4.91□□□□□ -1.62
LIMCH1-201ENST00000313860 NAV3Q8IVL0 2385 aa4.9□□□□□ -1.62
LIMCH1-201ENST00000313860 LMO4P61968 165 aa4.9□□□□□ -1.62
LIMCH1-201ENST00000313860 SMR3AQ99954 134 aa4.88□□□□□ -1.63
LIMCH1-201ENST00000313860 ZCCHC13Q8WW36 166 aaKnown RBP4.88□□□□□ -1.63
LIMCH1-201ENST00000313860 LAMA1P25391 3075 aa4.88□□□□□ -1.63
LIMCH1-201ENST00000313860 Q5VSD8 79 aa4.87□□□□□ -1.63
LIMCH1-201ENST00000313860 CFAP54Q96N23 3096 aa4.86□□□□□ -1.63
LIMCH1-201ENST00000313860 SPEGQ15772 3267 aa4.86□□□□□ -1.63
LIMCH1-201ENST00000313860 NBDYA0A0U1RRE5 68 aa4.85□□□□□ -1.63
LIMCH1-201ENST00000313860 COL6A3P12111 3177 aa4.85□□□□□ -1.63
LIMCH1-201ENST00000313860 CDH23Q9H251 3354 aa4.84□□□□□ -1.63
LIMCH1-201ENST00000313860 LINC01546A6NGU7 62 aa4.84□□□□□ -1.63
LIMCH1-201ENST00000313860 ZNF861PO60384 105 aa4.84□□□□□ -1.63
LIMCH1-201ENST00000313860 SPTAN1Q13813 2472 aaKnown RBP4.83□□□□□ -1.64
LIMCH1-201ENST00000313860 CACNA1HO95180 2353 aa4.83□□□□□ -1.64
LIMCH1-201ENST00000313860 KRTAP24-1Q3LI83 254 aa4.83□□□□□ -1.64
LIMCH1-201ENST00000313860 TRIOO75962 3097 aa4.83□□□□□ -1.64
LIMCH1-201ENST00000313860 REV3LO60673 3130 aa4.82□□□□□ -1.64
LIMCH1-201ENST00000313860 GVINP1Q7Z2Y8 2422 aa4.81□□□□□ -1.64
LIMCH1-201ENST00000313860 VPS13AQ96RL7 3174 aa4.81□□□□□ -1.64
LIMCH1-201ENST00000313860 FAM208BQ5VWN6 2430 aa4.8□□□□□ -1.64
LIMCH1-201ENST00000313860 KCNQ1DNQ9H478 68 aa4.8□□□□□ -1.64
LIMCH1-201ENST00000313860 PP632Q6XCG6 107 aa4.79□□□□□ -1.64
LIMCH1-201ENST00000313860 PRRC2CQ9Y520 2896 aaKnown RBP4.79□□□□□ -1.64
LIMCH1-201ENST00000313860 GPR179Q6PRD1 2367 aa4.79□□□□□ -1.64
LIMCH1-201ENST00000313860 FRYLO94915 3013 aa4.78□□□□□ -1.64
LIMCH1-201ENST00000313860 EYSQ5T1H1 3165 aa4.78□□□□□ -1.64
LIMCH1-201ENST00000313860 PRR34Q9NV39 138 aa4.77□□□□□ -1.65
LIMCH1-201ENST00000313860 FLG2Q5D862 2391 aaPredicted RBP4.76□□□□□ -1.65
LIMCH1-201ENST00000313860 SPRR4Q96PI1 79 aa4.76□□□□□ -1.65
LIMCH1-201ENST00000313860 FREM2Q5SZK8 3169 aa4.75□□□□□ -1.65
LIMCH1-201ENST00000313860 A8MU10 97 aa4.74□□□□□ -1.65
LIMCH1-201ENST00000313860 CNBPP62633 177 aaKnown RBP4.74□□□□□ -1.65
LIMCH1-201ENST00000313860 PRUNE2Q8WUY3 3088 aa4.74□□□□□ -1.65
LIMCH1-201ENST00000313860 DSPP15924 2871 aaKnown RBP4.74□□□□□ -1.65
LIMCH1-201ENST00000313860 TNP2Q05952 138 aa4.74□□□□□ -1.65
LIMCH1-201ENST00000313860 RAI1Q7Z5J4 1906 aaPredicted RBP4.74□□□□□ -1.65
LIMCH1-201ENST00000313860 CYSTM1Q9H1C7 97 aa4.73□□□□□ -1.65
LIMCH1-201ENST00000313860 MYO15AQ9UKN7 3530 aa4.73□□□□□ -1.65
LIMCH1-201ENST00000313860 LINC00612Q8N6U2 182 aa4.73□□□□□ -1.65
LIMCH1-201ENST00000313860 ASB16-AS1Q495Z4 193 aa4.73□□□□□ -1.65
LIMCH1-201ENST00000313860 WDFY3Q8IZQ1 3526 aa4.72□□□□□ -1.65
LIMCH1-201ENST00000313860 CASC10Q5T4H9 136 aa4.72□□□□□ -1.65
LIMCH1-201ENST00000313860 Q5W150 140 aa4.71□□□□□ -1.66
LIMCH1-201ENST00000313860 A6NN06 94 aa4.68□□□□□ -1.66
LIMCH1-201ENST00000313860 TNRC18O15417 2968 aaPredicted RBP4.68□□□□□ -1.66
LIMCH1-201ENST00000313860 DOPEY1Q5JWR5 2465 aa4.67□□□□□ -1.66
LIMCH1-201ENST00000313860 A8MUU9 505 aa4.67□□□□□ -1.66
LIMCH1-201ENST00000313860 OXTP01178 125 aa4.66□□□□□ -1.66
LIMCH1-201ENST00000313860 KALRNO60229 2985 aa4.66□□□□□ -1.66
LIMCH1-201ENST00000313860 CREBBPQ92793 2442 aa4.66□□□□□ -1.66
LIMCH1-201ENST00000313860 CELSR3Q9NYQ7 3312 aa4.65□□□□□ -1.66
LIMCH1-201ENST00000313860 F8P00451 2351 aa4.65□□□□□ -1.67
LIMCH1-201ENST00000313860 ZNF462Q96JM2 2506 aa4.64□□□□□ -1.67
LIMCH1-201ENST00000313860 MMP24-AS1A0A0U1RRL7 71 aa4.63□□□□□ -1.67
LIMCH1-201ENST00000313860 CFAP47Q6ZTR5 3102 aa4.63□□□□□ -1.67
LIMCH1-201ENST00000313860 SPTBN5Q9NRC6 3674 aaKnown RBP4.63□□□□□ -1.67
LIMCH1-201ENST00000313860 TNP1P09430 55 aa4.62□□□□□ -1.67
LIMCH1-201ENST00000313860 KRTAP10-9P60411 292 aa4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms