RNA–Protein interactions for RNA: ENST00000637285.1

SCN1A-215, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 100 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-215ENST00000637285 PDCD11Q14690 1871 aaKnown RBP-3.43□□□□□ -2.96
SCN1A-215ENST00000637285 LSM10Q969L4 123 aaKnown RBP-3.43□□□□□ -2.96
SCN1A-215ENST00000637285 PSENENQ9NZ42 101 aa-3.43□□□□□ -2.96
SCN1A-215ENST00000637285 TRBV7-7A0A0K0K1E9 115 aa-3.44□□□□□ -2.96
SCN1A-215ENST00000637285 SFTA2Q6UW10 78 aa-3.44□□□□□ -2.96
SCN1A-215ENST00000637285 SNRNP25Q9BV90 132 aaKnown RBP-3.44□□□□□ -2.96
SCN1A-215ENST00000637285 SPANXDQ9BXN6 97 aa-3.44□□□□□ -2.96
SCN1A-215ENST00000637285 LINC00474Q9P2X8 69 aa-3.44□□□□□ -2.96
SCN1A-215ENST00000637285 ANKRD36A6QL64 1941 aa-3.44□□□□□ -2.96
SCN1A-215ENST00000637285 CPSF1Q10570 1443 aaKnown RBP-3.44□□□□□ -2.96
SCN1A-215ENST00000637285 A0A0G2JND7 137 aa-3.45□□□□□ -2.96
SCN1A-215ENST00000637285 M0R2Z0 102 aa-3.45□□□□□ -2.96
SCN1A-215ENST00000637285 NDUFA3O95167 84 aa-3.45□□□□□ -2.96
SCN1A-215ENST00000637285 ARL11Q969Q4 196 aa-3.45□□□□□ -2.96
SCN1A-215ENST00000637285 NEFHP12036 1026 aa-3.46□□□□□ -2.96
SCN1A-215ENST00000637285 DPH3Q96FX2 82 aa-3.46□□□□□ -2.96
SCN1A-215ENST00000637285 PDCD10Q9BUL8 212 aa-3.46□□□□□ -2.96
SCN1A-215ENST00000637285 CENPHQ9H3R5 247 aa-3.46□□□□□ -2.96
SCN1A-215ENST00000637285 ITPR2Q14571 2701 aa-3.47□□□□□ -2.96
SCN1A-215ENST00000637285 RGPD2P0DJD1 1756 aa-3.47□□□□□ -2.96
SCN1A-215ENST00000637285 TRAPPC2P0DI81 140 aa-3.47□□□□□ -2.96
SCN1A-215ENST00000637285 TRAPPC2BP0DI82 140 aa-3.47□□□□□ -2.96
SCN1A-215ENST00000637285 CLPSL2Q6UWE3 100 aa-3.47□□□□□ -2.96
SCN1A-215ENST00000637285 PP6455Q8WZ26 134 aa-3.47□□□□□ -2.96
SCN1A-215ENST00000637285 DDA1Q9BW61 102 aa-3.47□□□□□ -2.96
SCN1A-215ENST00000637285 C4AP0C0L4 1744 aa-3.47□□□□□ -2.97
SCN1A-215ENST00000637285 C4BP0C0L5 1744 aa-3.47□□□□□ -2.97
SCN1A-215ENST00000637285 MAPKBP1O60336 1514 aa-3.48□□□□□ -2.97
SCN1A-215ENST00000637285 ARMS2P0C7Q2 107 aa-3.48□□□□□ -2.97
SCN1A-215ENST00000637285 SCGB1A1P11684 91 aa-3.48□□□□□ -2.97
SCN1A-215ENST00000637285 GNGT1P63211 74 aa-3.48□□□□□ -2.97
SCN1A-215ENST00000637285 SMCO1Q147U7 214 aa-3.48□□□□□ -2.97
SCN1A-215ENST00000637285 UBE2D4Q9Y2X8 147 aa-3.48□□□□□ -2.97
SCN1A-215ENST00000637285 DNAH5Q8TE73 4624 aa-3.48□□□□□ -2.97
SCN1A-215ENST00000637285 PBRM1Q86U86 1689 aa-3.49□□□□□ -2.97
SCN1A-215ENST00000637285 H3BQF6 201 aa-3.49□□□□□ -2.97
SCN1A-215ENST00000637285 COMMD6Q7Z4G1 85 aa-3.49□□□□□ -2.97
SCN1A-215ENST00000637285 DEFB107AQ8IZN7 70 aa-3.49□□□□□ -2.97
SCN1A-215ENST00000637285 MT1MQ8N339 61 aa-3.49□□□□□ -2.97
SCN1A-215ENST00000637285 COPS9Q8WXC6 57 aa-3.49□□□□□ -2.97
SCN1A-215ENST00000637285 PPP3R2Q96LZ3 170 aa-3.49□□□□□ -2.97
SCN1A-215ENST00000637285 GSKIPQ9P0R6 139 aa-3.49□□□□□ -2.97
SCN1A-215ENST00000637285 DNAH17Q9UFH2 4485 aa-3.49□□□□□ -2.97
SCN1A-215ENST00000637285 CFTRP13569 1480 aa-3.49□□□□□ -2.97
SCN1A-215ENST00000637285 H0Y9P7 68 aa-3.5□□□□□ -2.97
SCN1A-215ENST00000637285 Q56UQ5 140 aa-3.5□□□□□ -2.97
SCN1A-215ENST00000637285 MANBALQ9NQG1 85 aa-3.5□□□□□ -2.97
SCN1A-215ENST00000637285 SERP1Q9Y6X1 66 aa-3.5□□□□□ -2.97
SCN1A-215ENST00000637285 TCHHQ07283 1943 aa-3.5□□□□□ -2.97
SCN1A-215ENST00000637285 TLN1Q9Y490 2541 aaKnown RBP-3.51□□□□□ -2.97
SCN1A-215ENST00000637285 COX6B2Q6YFQ2 88 aa-3.51□□□□□ -2.97
SCN1A-215ENST00000637285 TCEAL4Q96EI5 215 aa-3.51□□□□□ -2.97
SCN1A-215ENST00000637285 SPANXA1Q9NS26 97 aa-3.51□□□□□ -2.97
SCN1A-215ENST00000637285 CCDC167Q9P0B6 97 aa-3.51□□□□□ -2.97
SCN1A-215ENST00000637285 CUX1P39880 1505 aa-3.51□□□□□ -2.97
SCN1A-215ENST00000637285 FHAD1B1AJZ9 1412 aa-3.52□□□□□ -2.97
SCN1A-215ENST00000637285 COPZ1P61923 177 aa-3.52□□□□□ -2.97
SCN1A-215ENST00000637285 MT2AP02795 61 aa-3.53□□□□□ -2.97
SCN1A-215ENST00000637285 COX6CP09669 75 aa-3.53□□□□□ -2.97
SCN1A-215ENST00000637285 HSD52Q0P140 79 aa-3.53□□□□□ -2.97
SCN1A-215ENST00000637285 RERGLQ9H628 205 aa-3.53□□□□□ -2.97
SCN1A-215ENST00000637285 SHROOM2Q13796 1616 aa-3.53□□□□□ -2.97
SCN1A-215ENST00000637285 A2ML1A8K2U0 1454 aa-3.54□□□□□ -2.98
SCN1A-215ENST00000637285 DMXL2Q8TDJ6 3036 aa-3.54□□□□□ -2.98
SCN1A-215ENST00000637285 FABP1P07148 127 aa-3.54□□□□□ -2.98
SCN1A-215ENST00000637285 SPTBN5Q9NRC6 3674 aaKnown RBP-3.55□□□□□ -2.98
SCN1A-215ENST00000637285 MT1BP07438 61 aa-3.55□□□□□ -2.98
SCN1A-215ENST00000637285 Q0VG73 95 aa-3.55□□□□□ -2.98
SCN1A-215ENST00000637285 TSTD1Q8NFU3 115 aa-3.55□□□□□ -2.98
SCN1A-215ENST00000637285 CDC26Q8NHZ8 85 aa-3.55□□□□□ -2.98
SCN1A-215ENST00000637285 C12orf57Q99622 126 aa-3.55□□□□□ -2.98
SCN1A-215ENST00000637285 SCN11AQ9UI33 1791 aa-3.56□□□□□ -2.98
SCN1A-215ENST00000637285 MIF4GDA9UHW6 222 aaKnown RBP-3.56□□□□□ -2.98
SCN1A-215ENST00000637285 KRTAP20-1Q3LI63 56 aa-3.56□□□□□ -2.98
SCN1A-215ENST00000637285 DIP2CQ9Y2E4 1556 aa-3.56□□□□□ -2.98
SCN1A-215ENST00000637285 TARBP1Q13395 1621 aaKnown RBP-3.56□□□□□ -2.98
SCN1A-215ENST00000637285 C7orf77A4D0Y5 90 aa-3.57□□□□□ -2.98
SCN1A-215ENST00000637285 GNG11P61952 73 aa-3.57□□□□□ -2.98
SCN1A-215ENST00000637285 RPS25P62851 125 aaKnown RBP-3.57□□□□□ -2.98
SCN1A-215ENST00000637285 PREX1Q8TCU6 1659 aa-3.57□□□□□ -2.98
SCN1A-215ENST00000637285 MRC2Q9UBG0 1479 aa-3.57□□□□□ -2.98
SCN1A-215ENST00000637285 ABCC5O15440 1437 aa-3.58□□□□□ -2.98
SCN1A-215ENST00000637285 CKS1BP61024 79 aa-3.58□□□□□ -2.98
SCN1A-215ENST00000637285 SMIM21Q3B7S5 101 aa-3.58□□□□□ -2.98
SCN1A-215ENST00000637285 SMIM15Q7Z3B0 74 aa-3.58□□□□□ -2.98
SCN1A-215ENST00000637285 C8orf59Q8N0T1 100 aaPredicted RBP-3.58□□□□□ -2.98
SCN1A-215ENST00000637285 PRO1854Q9UHT4 67 aa-3.58□□□□□ -2.98
SCN1A-215ENST00000637285 NBEAP1P0C6P0 100 aa-3.59□□□□□ -2.98
SCN1A-215ENST00000637285 CEP152O94986 1710 aa-3.59□□□□□ -2.98
SCN1A-215ENST00000637285 TOP2BQ02880 1626 aa-3.59□□□□□ -2.98
SCN1A-215ENST00000637285 DNAH10Q8IVF4 4471 aa-3.6□□□□□ -2.99
SCN1A-215ENST00000637285 F6UZH7 168 aa-3.6□□□□□ -2.99
SCN1A-215ENST00000637285 UBE2L3P68036 154 aaKnown RBP-3.6□□□□□ -2.99
SCN1A-215ENST00000637285 CATR1Q13166 79 aa-3.6□□□□□ -2.99
SCN1A-215ENST00000637285 VAMP8Q9BV40 100 aa-3.6□□□□□ -2.99
SCN1A-215ENST00000637285 PSMG4Q5JS54 123 aa-3.61□□□□□ -2.99
SCN1A-215ENST00000637285 DEFB106AQ8N104 65 aa-3.62□□□□□ -2.99
SCN1A-215ENST00000637285 AP4S1Q9Y587 144 aa-3.62□□□□□ -2.99
SCN1A-215ENST00000637285 ADGRG4Q8IZF6 3080 aa-3.63□□□□□ -2.99
SCN1A-215ENST00000637285 CDC42BPAQ5VT25 1732 aa-3.63□□□□□ -2.99
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms