RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 LINC01561Q8N1V8 128 aa10.6□□□□□ -0.71
UPF1-204ENST00000596842 FAM222AQ5U5X8 452 aa10.6□□□□□ -0.71
UPF1-204ENST00000596842 ORMDL1Q9P0S3 153 aa10.6□□□□□ -0.71
UPF1-204ENST00000596842 UNC79Q9P2D8 2635 aa10.6□□□□□ -0.71
UPF1-204ENST00000596842 CSNK1G2-AS1Q8NCQ2 148 aa10.59□□□□□ -0.71
UPF1-204ENST00000596842 C19orf73Q9NVV2 129 aa10.58□□□□□ -0.72
UPF1-204ENST00000596842 NDUFC2-KCTD14E9PQ53 114 aa10.58□□□□□ -0.72
UPF1-204ENST00000596842 TENM4Q6N022 2769 aa10.58□□□□□ -0.72
UPF1-204ENST00000596842 OVOL2Q9BRP0 275 aa10.58□□□□□ -0.72
UPF1-204ENST00000596842 SMIM26A0A096LP01 95 aa10.57□□□□□ -0.72
UPF1-204ENST00000596842 F8P00451 2351 aa10.57□□□□□ -0.72
UPF1-204ENST00000596842 TEP1Q99973 2627 aaKnown RBP10.57□□□□□ -0.72
UPF1-204ENST00000596842 CMC4P56277 68 aaPredicted RBP10.57□□□□□ -0.72
UPF1-204ENST00000596842 Q5XG85 94 aa10.57□□□□□ -0.72
UPF1-204ENST00000596842 PRR4Q16378 134 aa10.56□□□□□ -0.72
UPF1-204ENST00000596842 C6orf99Q4VX62 202 aa10.55□□□□□ -0.72
UPF1-204ENST00000596842 CHCHD10Q8WYQ3 142 aaPredicted RBP10.55□□□□□ -0.72
UPF1-204ENST00000596842 SERP1Q9Y6X1 66 aa10.55□□□□□ -0.72
UPF1-204ENST00000596842 C6orf223Q8N319 242 aa10.54□□□□□ -0.72
UPF1-204ENST00000596842 PRO0255Q9UI72 69 aa10.54□□□□□ -0.72
UPF1-204ENST00000596842 SPTSSBQ8NFR3 76 aa10.53□□□□□ -0.72
UPF1-204ENST00000596842 Q6JHZ5 121 aa10.53□□□□□ -0.72
UPF1-204ENST00000596842 REG3AQ06141 175 aa10.52□□□□□ -0.73
UPF1-204ENST00000596842 SPATA3Q8NHX4 192 aa10.52□□□□□ -0.73
UPF1-204ENST00000596842 F8WDY8 70 aa10.52□□□□□ -0.73
UPF1-204ENST00000596842 TENM1Q9UKZ4 2725 aa10.52□□□□□ -0.73
UPF1-204ENST00000596842 TRBV7-6A0A0J9YX20 115 aa10.51□□□□□ -0.73
UPF1-204ENST00000596842 NANOS2P60321 138 aaKnown RBP10.5□□□□□ -0.73
UPF1-204ENST00000596842 UNQ6190/PRO20217Q6UXQ8 127 aa10.5□□□□□ -0.73
UPF1-204ENST00000596842 KLK12Q9UKR0 248 aa10.5□□□□□ -0.73
UPF1-204ENST00000596842 PSPHP1O15172 72 aa10.49□□□□□ -0.73
UPF1-204ENST00000596842 Q8IZM0 81 aa10.49□□□□□ -0.73
UPF1-204ENST00000596842 XAGE1AQ9HD64 81 aa10.49□□□□□ -0.73
UPF1-204ENST00000596842 C10orf25Q5T742 122 aa10.49□□□□□ -0.73
UPF1-204ENST00000596842 Q8N814 137 aa10.48□□□□□ -0.73
UPF1-204ENST00000596842 HIVEP1P15822 2718 aa10.47□□□□□ -0.73
UPF1-204ENST00000596842 X6R8D5 127 aa10.47□□□□□ -0.73
UPF1-204ENST00000596842 SPAG11BQ08648 103 aa10.46□□□□□ -0.73
UPF1-204ENST00000596842 CD164L2Q6UWJ8 174 aa10.46□□□□□ -0.74
UPF1-204ENST00000596842 Q8NDZ9 215 aa10.46□□□□□ -0.74
UPF1-204ENST00000596842 IGHV4-28A0A0C4DH34 117 aa10.44□□□□□ -0.74
UPF1-204ENST00000596842 KRTAP10-3P60369 221 aa10.44□□□□□ -0.74
UPF1-204ENST00000596842 CELA1Q9UNI1 258 aa10.44□□□□□ -0.74
UPF1-204ENST00000596842 TMEM256-PLSCR3K7ERE1 68 aa10.44□□□□□ -0.74
UPF1-204ENST00000596842 CCKP06307 115 aa10.44□□□□□ -0.74
UPF1-204ENST00000596842 TRRAPQ9Y4A5 3859 aa10.43□□□□□ -0.74
UPF1-204ENST00000596842 A0A1B0GUV1 79 aa10.43□□□□□ -0.74
UPF1-204ENST00000596842 MRPL55Q7Z7F7 128 aaKnown RBP10.43□□□□□ -0.74
UPF1-204ENST00000596842 PMAIP1Q13794 54 aa10.42□□□□□ -0.74
UPF1-204ENST00000596842 PDZD2O15018 2839 aa10.42□□□□□ -0.74
UPF1-204ENST00000596842 TRAV10A0A0B4J240 114 aa10.42□□□□□ -0.74
UPF1-204ENST00000596842 HIGD2BQ4VC39 106 aa10.42□□□□□ -0.74
UPF1-204ENST00000596842 CYSRT1A8MQ03 144 aa10.42□□□□□ -0.74
UPF1-204ENST00000596842 KRTAP1-1Q07627 177 aa10.42□□□□□ -0.74
UPF1-204ENST00000596842 KIAA0087Q14695 138 aa10.42□□□□□ -0.74
UPF1-204ENST00000596842 PKD1L1Q8TDX9 2849 aa10.42□□□□□ -0.74
UPF1-204ENST00000596842 JMJD7-PLA2G4BH0Y9G9 81 aa10.41□□□□□ -0.74
UPF1-204ENST00000596842 Q6ZQY7 126 aa10.41□□□□□ -0.74
UPF1-204ENST00000596842 OTOGQ6ZRI0 2925 aa10.41□□□□□ -0.74
UPF1-204ENST00000596842 MIFP14174 115 aa10.4□□□□□ -0.74
UPF1-204ENST00000596842 FUSP35637 526 aaKnown RBP eCLIP10.4□□□□□ -0.74
UPF1-204ENST00000596842 LY6G6DO95868 133 aa10.39□□□□□ -0.75
UPF1-204ENST00000596842 Q8N9L7 120 aa10.39□□□□□ -0.75
UPF1-204ENST00000596842 C16orf95Q9H693 158 aa10.39□□□□□ -0.75
UPF1-204ENST00000596842 M0R2N4 97 aa10.39□□□□□ -0.75
UPF1-204ENST00000596842 TRAV7A0A075B6U4 112 aa10.38□□□□□ -0.75
UPF1-204ENST00000596842 OBSCN-AS1Q96MR7 158 aa10.37□□□□□ -0.75
UPF1-204ENST00000596842 H7BZZ5 65 aa10.36□□□□□ -0.75
UPF1-204ENST00000596842 TRBV10-3A0A0K0K1G6 114 aa10.35□□□□□ -0.75
UPF1-204ENST00000596842 TM2D3Q9BRN9 247 aa10.35□□□□□ -0.75
UPF1-204ENST00000596842 LYRM9A8MSI8 78 aa10.35□□□□□ -0.75
UPF1-204ENST00000596842 LINC00575Q6W349 94 aa10.35□□□□□ -0.75
UPF1-204ENST00000596842 NOTCH1P46531 2555 aa10.34□□□□□ -0.75
UPF1-204ENST00000596842 ANK3Q12955 4377 aaKnown RBP10.33□□□□□ -0.76
UPF1-204ENST00000596842 INAFM1C9JVW0 142 aa10.33□□□□□ -0.76
UPF1-204ENST00000596842 ZNF561-AS1K7EIQ3 104 aa10.33□□□□□ -0.76
UPF1-204ENST00000596842 COX17Q14061 63 aa10.33□□□□□ -0.76
UPF1-204ENST00000596842 APOC4P55056 127 aa10.33□□□□□ -0.76
UPF1-204ENST00000596842 FP248Q71RG6 208 aaPredicted RBP10.32□□□□□ -0.76
UPF1-204ENST00000596842 FLNBO75369 2602 aaKnown RBP10.32□□□□□ -0.76
UPF1-204ENST00000596842 SPART-AS1P0CW21 52 aa10.32□□□□□ -0.76
UPF1-204ENST00000596842 NSD1Q96L73 2696 aaPredicted RBP10.32□□□□□ -0.76
UPF1-204ENST00000596842 LINC00612Q8N6U2 182 aa10.32□□□□□ -0.76
UPF1-204ENST00000596842 C9orf66Q5T8R8 295 aa10.31□□□□□ -0.76
UPF1-204ENST00000596842 CAMK2N2Q96S95 79 aa10.31□□□□□ -0.76
UPF1-204ENST00000596842 NREPQ16612 68 aa10.3□□□□□ -0.76
UPF1-204ENST00000596842 DEFB105AQ8NG35 78 aa10.3□□□□□ -0.76
UPF1-204ENST00000596842 BAHCC1Q9P281 2608 aa10.29□□□□□ -0.76
UPF1-204ENST00000596842 TMEM254Q8TBM7 123 aa10.29□□□□□ -0.76
UPF1-204ENST00000596842 DIRC1Q969H9 104 aa10.29□□□□□ -0.76
UPF1-204ENST00000596842 ATP5EP2Q5VTU8 51 aa10.29□□□□□ -0.76
UPF1-204ENST00000596842 LINC01547P58512 204 aaPredicted RBP10.28□□□□□ -0.76
UPF1-204ENST00000596842 C6orf48Q9UBA6 75 aa10.28□□□□□ -0.76
UPF1-204ENST00000596842 STAB1Q9NY15 2570 aa10.28□□□□□ -0.76
UPF1-204ENST00000596842 WFDC10BQ8IUB3 73 aa10.28□□□□□ -0.76
UPF1-204ENST00000596842 MAST4O15021 2626 aa10.28□□□□□ -0.76
UPF1-204ENST00000596842 LYPD5Q6UWN5 251 aa10.28□□□□□ -0.76
UPF1-204ENST00000596842 LELP1Q5T871 98 aa10.27□□□□□ -0.76
UPF1-204ENST00000596842 C3orf84H3BNL1 204 aa10.27□□□□□ -0.77
UPF1-204ENST00000596842 BPY2O14599 106 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms