RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 CFAP43Q8NDM7 1665 aa0.45□□□□□ -2.34
CHD3-217ENST00000574022 UBR3Q6ZT12 1888 aa0.45□□□□□ -2.34
CHD3-217ENST00000574022 IQGAP3Q86VI3 1631 aa0.45□□□□□ -2.34
CHD3-217ENST00000574022 USP32Q8NFA0 1604 aa0.45□□□□□ -2.34
CHD3-217ENST00000574022 BCORQ6W2J9 1755 aa0.45□□□□□ -2.34
CHD3-217ENST00000574022 PREX1Q8TCU6 1659 aa0.44□□□□□ -2.34
CHD3-217ENST00000574022 FBN2P35556 2912 aa0.44□□□□□ -2.34
CHD3-217ENST00000574022 TRAV21A0A0B4J279 112 aa0.44□□□□□ -2.34
CHD3-217ENST00000574022 I3L3M4 83 aa0.44□□□□□ -2.34
CHD3-217ENST00000574022 CFDP00746 253 aaPredicted RBP0.44□□□□□ -2.34
CHD3-217ENST00000574022 COX7BP24311 80 aa0.44□□□□□ -2.34
CHD3-217ENST00000574022 Q5VSD8 79 aa0.44□□□□□ -2.34
CHD3-217ENST00000574022 C18orf32Q8TCD1 76 aa0.44□□□□□ -2.34
CHD3-217ENST00000574022 UGGT2Q9NYU1 1516 aa0.43□□□□□ -2.34
CHD3-217ENST00000574022 ARFGEF2Q9Y6D5 1785 aa0.43□□□□□ -2.34
CHD3-217ENST00000574022 NOTCH1P46531 2555 aa0.43□□□□□ -2.34
CHD3-217ENST00000574022 A0A087WXM4 84 aa0.43□□□□□ -2.34
CHD3-217ENST00000574022 PRH1P02810 166 aa0.43□□□□□ -2.34
CHD3-217ENST00000574022 RPL38P63173 70 aaKnown RBP0.43□□□□□ -2.34
CHD3-217ENST00000574022 DEFB121Q5J5C9 76 aa0.43□□□□□ -2.34
CHD3-217ENST00000574022 DOT1LQ8TEK3 1739 aa0.43□□□□□ -2.34
CHD3-217ENST00000574022 CPSF4LA6NMK7 179 aaKnown RBP0.42□□□□□ -2.34
CHD3-217ENST00000574022 KRTAP5-8O75690 187 aa0.42□□□□□ -2.34
CHD3-217ENST00000574022 KRTAP2-3P0C7H8 128 aa0.42□□□□□ -2.34
CHD3-217ENST00000574022 SMIM13P0DJ93 91 aa0.42□□□□□ -2.34
CHD3-217ENST00000574022 Q5BKY6 102 aa0.42□□□□□ -2.34
CHD3-217ENST00000574022 SMR3AQ99954 134 aa0.42□□□□□ -2.34
CHD3-217ENST00000574022 KRTAP2-4Q9BYR9 128 aa0.42□□□□□ -2.34
CHD3-217ENST00000574022 KRTAP2-1Q9BYU5 128 aa0.42□□□□□ -2.34
CHD3-217ENST00000574022 SMCO4Q9NRQ5 59 aa0.42□□□□□ -2.34
CHD3-217ENST00000574022 PIEZO2Q9H5I5 2752 aa0.41□□□□□ -2.34
CHD3-217ENST00000574022 BDP1A6H8Y1 2624 aa0.41□□□□□ -2.34
CHD3-217ENST00000574022 SPRR1BP22528 89 aa0.41□□□□□ -2.34
CHD3-217ENST00000574022 SPRR1AP35321 89 aa0.41□□□□□ -2.34
CHD3-217ENST00000574022 IFI27P40305 119 aaPredicted RBP0.41□□□□□ -2.34
CHD3-217ENST00000574022 FXYD6Q9H0Q3 95 aa0.41□□□□□ -2.34
CHD3-217ENST00000574022 URB1O60287 2271 aaKnown RBP0.41□□□□□ -2.34
CHD3-217ENST00000574022 GOLGA4Q13439 2230 aaKnown RBP0.41□□□□□ -2.34
CHD3-217ENST00000574022 ABCA12Q86UK0 2595 aa0.41□□□□□ -2.34
CHD3-217ENST00000574022 PLCE1Q9P212 2302 aa0.41□□□□□ -2.34
CHD3-217ENST00000574022 NWD1Q149M9 1564 aa0.4□□□□□ -2.34
CHD3-217ENST00000574022 DNMBPQ6XZF7 1577 aa0.4□□□□□ -2.34
CHD3-217ENST00000574022 PIEZO1Q92508 2521 aa0.4□□□□□ -2.34
CHD3-217ENST00000574022 ZC3H13Q5T200 1668 aaKnown RBP0.4□□□□□ -2.34
CHD3-217ENST00000574022 TNRC6CQ9HCJ0 1690 aaKnown RBP0.4□□□□□ -2.34
CHD3-217ENST00000574022 CLIP1P30622 1438 aa0.4□□□□□ -2.34
CHD3-217ENST00000574022 NESP48681 1621 aa0.4□□□□□ -2.35
CHD3-217ENST00000574022 EIF2AK4Q9P2K8 1649 aaKnown RBP0.4□□□□□ -2.35
CHD3-217ENST00000574022 UMAD1C9J7I0 102 aa0.4□□□□□ -2.35
CHD3-217ENST00000574022 SPINK1P00995 79 aa0.4□□□□□ -2.35
CHD3-217ENST00000574022 DEFA5Q01523 94 aa0.4□□□□□ -2.35
CHD3-217ENST00000574022 DEFB109BQ30KR1 87 aa0.4□□□□□ -2.35
CHD3-217ENST00000574022 DEFB105AQ8NG35 78 aa0.4□□□□□ -2.35
CHD3-217ENST00000574022 MRPL34Q9BQ48 92 aaKnown RBP0.4□□□□□ -2.35
CHD3-217ENST00000574022 KRTAP4-1Q9BYQ7 146 aa0.4□□□□□ -2.35
CHD3-217ENST00000574022 C2CD3Q4AC94 2353 aa0.4□□□□□ -2.35
CHD3-217ENST00000574022 PLCH1Q4KWH8 1693 aa0.4□□□□□ -2.35
CHD3-217ENST00000574022 APCP25054 2843 aa0.39□□□□□ -2.35
CHD3-217ENST00000574022 CICQ96RK0 1608 aaPredicted RBP0.39□□□□□ -2.35
CHD3-217ENST00000574022 CELSR2Q9HCU4 2923 aa0.39□□□□□ -2.35
CHD3-217ENST00000574022 RICTORQ6R327 1708 aa0.39□□□□□ -2.35
CHD3-217ENST00000574022 CCL22O00626 93 aa0.39□□□□□ -2.35
CHD3-217ENST00000574022 PDCD5O14737 125 aa0.39□□□□□ -2.35
CHD3-217ENST00000574022 IFI6P09912 130 aa0.39□□□□□ -2.35
CHD3-217ENST00000574022 NREPQ16612 68 aa0.39□□□□□ -2.35
CHD3-217ENST00000574022 USF3Q68DE3 2245 aa0.39□□□□□ -2.35
CHD3-217ENST00000574022 ADAMTS12P58397 1594 aa0.39□□□□□ -2.35
CHD3-217ENST00000574022 SPTBN2O15020 2390 aa0.39□□□□□ -2.35
CHD3-217ENST00000574022 DUOX2Q9NRD8 1548 aa0.38□□□□□ -2.35
CHD3-217ENST00000574022 PARP4Q9UKK3 1724 aaKnown RBP0.38□□□□□ -2.35
CHD3-217ENST00000574022 ZNF292O60281 2723 aa0.38□□□□□ -2.35
CHD3-217ENST00000574022 DOPEY2Q9Y3R5 2298 aa0.38□□□□□ -2.35
CHD3-217ENST00000574022 WIZO95785 1651 aa0.38□□□□□ -2.35
CHD3-217ENST00000574022 CD163L1Q9NR16 1453 aa0.38□□□□□ -2.35
CHD3-217ENST00000574022 APLNQ9ULZ1 77 aa0.38□□□□□ -2.35
CHD3-217ENST00000574022 CACNA1EQ15878 2313 aa0.38□□□□□ -2.35
CHD3-217ENST00000574022 TNCP24821 2201 aa0.38□□□□□ -2.35
CHD3-217ENST00000574022 ITSN1Q15811 1721 aa0.38□□□□□ -2.35
CHD3-217ENST00000574022 CHD9Q3L8U1 2897 aa0.38□□□□□ -2.35
CHD3-217ENST00000574022 DDX60LQ5H9U9 1706 aaKnown RBP0.38□□□□□ -2.35
CHD3-217ENST00000574022 LMTK2Q8IWU2 1503 aa0.38□□□□□ -2.35
CHD3-217ENST00000574022 F8P00451 2351 aa0.38□□□□□ -2.35
CHD3-217ENST00000574022 ZNF469Q96JG9 3925 aaPredicted RBP0.37□□□□□ -2.35
CHD3-217ENST00000574022 H3BVH4 76 aa0.37□□□□□ -2.35
CHD3-217ENST00000574022 SPINK4O60575 86 aa0.37□□□□□ -2.35
CHD3-217ENST00000574022 HEPN1Q6WQI6 88 aa0.37□□□□□ -2.35
CHD3-217ENST00000574022 MROH1Q8NDA8 1641 aa0.37□□□□□ -2.35
CHD3-217ENST00000574022 ANKRD50Q9ULJ7 1429 aa0.37□□□□□ -2.35
CHD3-217ENST00000574022 TPRP12270 2363 aaKnown RBP0.37□□□□□ -2.35
CHD3-217ENST00000574022 PTPRQQ9UMZ3 2332 aa0.36□□□□□ -2.35
CHD3-217ENST00000574022 ABCA9Q8IUA7 1624 aa0.36□□□□□ -2.35
CHD3-217ENST00000574022 LCE6AA0A183 80 aa0.36□□□□□ -2.35
CHD3-217ENST00000574022 NDUFA4O00483 81 aa0.36□□□□□ -2.35
CHD3-217ENST00000574022 KLK9Q2XQG4 91 aa0.36□□□□□ -2.35
CHD3-217ENST00000574022 H1FX-AS1Q4G0G2 97 aa0.36□□□□□ -2.35
CHD3-217ENST00000574022 PTPRZ1P23471 2315 aaPredicted RBP0.36□□□□□ -2.35
CHD3-217ENST00000574022 CDC42BPGQ6DT37 1551 aa0.36□□□□□ -2.35
CHD3-217ENST00000574022 C4AP0C0L4 1744 aa0.35□□□□□ -2.35
CHD3-217ENST00000574022 C4BP0C0L5 1744 aa0.35□□□□□ -2.35
CHD3-217ENST00000574022 NRAPQ86VF7 1730 aa0.35□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms