RNA–Protein interactions for RNA: ENST00000560349.1

CARMIL3-203, Transcript of capping protein regulator and myosin 1 linker 3, humanhuman

TSL 1 (best)

Gene CARMIL3, Length 2,664 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CARMIL3-203ENST00000560349 C22orf24Q9Y442 160 aa9.51□□□□□ -0.89
CARMIL3-203ENST00000560349 IGKV2-28A0A075B6P5 120 aa9.5□□□□□ -0.89
CARMIL3-203ENST00000560349 IGKV2D-28P01615 120 aa9.5□□□□□ -0.89
CARMIL3-203ENST00000560349 PRR34Q9NV39 138 aa9.5□□□□□ -0.89
CARMIL3-203ENST00000560349 IBA57-AS1B1ANH7 110 aa9.5□□□□□ -0.89
CARMIL3-203ENST00000560349 PRR3P79522 188 aaKnown RBP9.5□□□□□ -0.89
CARMIL3-203ENST00000560349 DNHD1Q96M86 4753 aa9.5□□□□□ -0.89
CARMIL3-203ENST00000560349 UNQ6190/PRO20217Q6UXQ8 127 aa9.49□□□□□ -0.89
CARMIL3-203ENST00000560349 TRACP01848 142 aa9.49□□□□□ -0.89
CARMIL3-203ENST00000560349 SPAG11BQ08648 103 aa9.49□□□□□ -0.89
CARMIL3-203ENST00000560349 FAM236AA0A1B0GUQ0 79 aa9.49□□□□□ -0.89
CARMIL3-203ENST00000560349 FAM236BA0A1B0GV22 79 aa9.49□□□□□ -0.89
CARMIL3-203ENST00000560349 BAALC-AS2P0C853 105 aa9.49□□□□□ -0.89
CARMIL3-203ENST00000560349 C3orf22Q8N5N4 141 aa9.49□□□□□ -0.89
CARMIL3-203ENST00000560349 TM2D3Q9BRN9 247 aa9.49□□□□□ -0.89
CARMIL3-203ENST00000560349 CSMD3Q7Z407 3707 aa9.48□□□□□ -0.89
CARMIL3-203ENST00000560349 C4orf26Q17RF5 130 aa9.48□□□□□ -0.89
CARMIL3-203ENST00000560349 HIGD2BQ4VC39 106 aa9.48□□□□□ -0.89
CARMIL3-203ENST00000560349 DNAH9Q9NYC9 4486 aa9.47□□□□□ -0.89
CARMIL3-203ENST00000560349 Q9HAA7 133 aa9.47□□□□□ -0.89
CARMIL3-203ENST00000560349 H3BNG1 76 aa9.47□□□□□ -0.89
CARMIL3-203ENST00000560349 F8WDY8 70 aa9.46□□□□□ -0.89
CARMIL3-203ENST00000560349 RPL28P46779 137 aaKnown RBP9.46□□□□□ -0.89
CARMIL3-203ENST00000560349 RPS28P62857 69 aaKnown RBP9.46□□□□□ -0.89
CARMIL3-203ENST00000560349 HRCT1Q6UXD1 115 aa9.46□□□□□ -0.89
CARMIL3-203ENST00000560349 SMCR5Q8TEV8 140 aa9.46□□□□□ -0.89
CARMIL3-203ENST00000560349 TRAV13-2A0A0B4J235 113 aa9.46□□□□□ -0.9
CARMIL3-203ENST00000560349 TRBV7-7A0A0K0K1E9 115 aa9.45□□□□□ -0.9
CARMIL3-203ENST00000560349 UQCRQO14949 82 aa9.45□□□□□ -0.9
CARMIL3-203ENST00000560349 ACYP1P07311 99 aa9.44□□□□□ -0.9
CARMIL3-203ENST00000560349 Q8NDZ9 215 aa9.44□□□□□ -0.9
CARMIL3-203ENST00000560349 DNAH7Q8WXX0 4024 aa9.44□□□□□ -0.9
CARMIL3-203ENST00000560349 IGKV2D-24A0A075B6R9 120 aa9.43□□□□□ -0.9
CARMIL3-203ENST00000560349 SMIM11BQ8TCY0 68 aa9.43□□□□□ -0.9
CARMIL3-203ENST00000560349 MEGF8Q7Z7M0 2845 aa9.42□□□□□ -0.9
CARMIL3-203ENST00000560349 TRAV10A0A0B4J240 114 aa9.42□□□□□ -0.9
CARMIL3-203ENST00000560349 PRKDCP78527 4128 aaKnown RBP9.42□□□□□ -0.9
CARMIL3-203ENST00000560349 A0A087WYN8 130 aa9.42□□□□□ -0.9
CARMIL3-203ENST00000560349 OXTP01178 125 aa9.42□□□□□ -0.9
CARMIL3-203ENST00000560349 LINC01561Q8N1V8 128 aa9.42□□□□□ -0.9
CARMIL3-203ENST00000560349 DNAH10Q8IVF4 4471 aa9.42□□□□□ -0.9
CARMIL3-203ENST00000560349 LINC00588Q9Y4M8 146 aa9.41□□□□□ -0.9
CARMIL3-203ENST00000560349 NCR3O14931 201 aa9.41□□□□□ -0.9
CARMIL3-203ENST00000560349 GAGE2AQ6NT46 116 aa9.4□□□□□ -0.9
CARMIL3-203ENST00000560349 SDIM1Q6ZPB5 146 aa9.4□□□□□ -0.9
CARMIL3-203ENST00000560349 CXCL5P42830 114 aa9.4□□□□□ -0.9
CARMIL3-203ENST00000560349 C9orf129Q5T035 196 aaKnown RBP9.4□□□□□ -0.9
CARMIL3-203ENST00000560349 Q5XG85 94 aa9.4□□□□□ -0.9
CARMIL3-203ENST00000560349 KRTAP26-1Q6PEX3 210 aa9.4□□□□□ -0.9
CARMIL3-203ENST00000560349 CYSTM1Q9H1C7 97 aa9.4□□□□□ -0.9
CARMIL3-203ENST00000560349 XAGE1AQ9HD64 81 aa9.4□□□□□ -0.9
CARMIL3-203ENST00000560349 C1orf43Q9BWL3 253 aa9.39□□□□□ -0.91
CARMIL3-203ENST00000560349 C6orf48Q9UBA6 75 aa9.39□□□□□ -0.91
CARMIL3-203ENST00000560349 LINC01556Q5JQF7 62 aa9.38□□□□□ -0.91
CARMIL3-203ENST00000560349 LINC00643Q86TS7 51 aa9.38□□□□□ -0.91
CARMIL3-203ENST00000560349 ZNF561-AS1K7EIQ3 104 aa9.38□□□□□ -0.91
CARMIL3-203ENST00000560349 C15orf56Q8N910 161 aa9.38□□□□□ -0.91
CARMIL3-203ENST00000560349 DPH3Q96FX2 82 aa9.38□□□□□ -0.91
CARMIL3-203ENST00000560349 IMUPQ9GZP8 106 aa9.38□□□□□ -0.91
CARMIL3-203ENST00000560349 INAFM2P0DMQ5 153 aa9.37□□□□□ -0.91
CARMIL3-203ENST00000560349 CASC10Q5T4H9 136 aa9.37□□□□□ -0.91
CARMIL3-203ENST00000560349 CAMK2N2Q96S95 79 aa9.37□□□□□ -0.91
CARMIL3-203ENST00000560349 hADV29S1A0JD25 119 aa9.36□□□□□ -0.91
CARMIL3-203ENST00000560349 DNAH1Q9P2D7 4330 aa9.36□□□□□ -0.91
CARMIL3-203ENST00000560349 H0YGX0 51 aa9.35□□□□□ -0.91
CARMIL3-203ENST00000560349 LECT2O14960 151 aa9.35□□□□□ -0.91
CARMIL3-203ENST00000560349 DNAL4O96015 105 aa9.35□□□□□ -0.91
CARMIL3-203ENST00000560349 CRYGAP11844 174 aa9.35□□□□□ -0.91
CARMIL3-203ENST00000560349 COX7CP15954 63 aa9.35□□□□□ -0.91
CARMIL3-203ENST00000560349 Q6ZRU5 148 aa9.35□□□□□ -0.91
CARMIL3-203ENST00000560349 DSCR8Q96T75 97 aa9.35□□□□□ -0.91
CARMIL3-203ENST00000560349 COX17Q14061 63 aa9.35□□□□□ -0.91
CARMIL3-203ENST00000560349 PLECQ15149 4684 aaKnown RBP9.34□□□□□ -0.91
CARMIL3-203ENST00000560349 C2orf48Q96LS8 159 aa9.34□□□□□ -0.91
CARMIL3-203ENST00000560349 DNAH10OSP0CZ25 163 aa9.33□□□□□ -0.92
CARMIL3-203ENST00000560349 C14orf132Q9NPU4 83 aa9.33□□□□□ -0.92
CARMIL3-203ENST00000560349 SLPIP03973 132 aa9.33□□□□□ -0.92
CARMIL3-203ENST00000560349 RPL18AQ02543 176 aaKnown RBP9.33□□□□□ -0.92
CARMIL3-203ENST00000560349 OBSCN-AS1Q96MR7 158 aa9.32□□□□□ -0.92
CARMIL3-203ENST00000560349 SEC61GP60059 68 aa9.3□□□□□ -0.92
CARMIL3-203ENST00000560349 PRO0628Q9UI54 55 aa9.3□□□□□ -0.92
CARMIL3-203ENST00000560349 STARD9Q9P2P6 4700 aa9.3□□□□□ -0.92
CARMIL3-203ENST00000560349 S100A7L2Q5SY68 101 aa9.29□□□□□ -0.92
CARMIL3-203ENST00000560349 LINC00336Q6ZUF6 198 aa9.29□□□□□ -0.92
CARMIL3-203ENST00000560349 PKIGQ9Y2B9 76 aa9.29□□□□□ -0.92
CARMIL3-203ENST00000560349 KRTAP1-5Q9BYS1 174 aa9.28□□□□□ -0.92
CARMIL3-203ENST00000560349 TMEM258P61165 79 aa9.28□□□□□ -0.92
CARMIL3-203ENST00000560349 C6orf99Q4VX62 202 aa9.28□□□□□ -0.92
CARMIL3-203ENST00000560349 LINC00846Q9NV44 126 aa9.28□□□□□ -0.92
CARMIL3-203ENST00000560349 TGP01266 2768 aa9.27□□□□□ -0.93
CARMIL3-203ENST00000560349 NDUFC2O95298 119 aa9.27□□□□□ -0.93
CARMIL3-203ENST00000560349 Q6ZRP5 223 aa9.27□□□□□ -0.93
CARMIL3-203ENST00000560349 B9D2Q9BPU9 175 aa9.27□□□□□ -0.93
CARMIL3-203ENST00000560349 GVQW2A0A096LPI5 108 aaPredicted RBP9.26□□□□□ -0.93
CARMIL3-203ENST00000560349 USP17L23D6RBM5 183 aa9.26□□□□□ -0.93
CARMIL3-203ENST00000560349 ORMDL1Q9P0S3 153 aa9.25□□□□□ -0.93
CARMIL3-203ENST00000560349 SYCNQ0VAF6 134 aa9.25□□□□□ -0.93
CARMIL3-203ENST00000560349 TRBV10-3A0A0K0K1G6 114 aa9.24□□□□□ -0.93
CARMIL3-203ENST00000560349 IGKV3D-7A0A0C4DH55 119 aa9.24□□□□□ -0.93
CARMIL3-203ENST00000560349 LINC00167Q96N53 147 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms