RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 A0A0G2JMZ2 1700 aa-0.07□□□□□ -2.42
SCFD1-217ENST00000555953 SHPRHQ149N8 1683 aa-0.08□□□□□ -2.42
SCFD1-217ENST00000555953 SYNE2Q8WXH0 6885 aaKnown RBP-0.08□□□□□ -2.42
SCFD1-217ENST00000555953 GYPAP02724 150 aa-0.08□□□□□ -2.42
SCFD1-217ENST00000555953 HMGN2P05204 90 aaKnown RBP-0.08□□□□□ -2.42
SCFD1-217ENST00000555953 PYY3Q5JQD4 70 aa-0.08□□□□□ -2.42
SCFD1-217ENST00000555953 ALKAL2Q6UX46 152 aa-0.08□□□□□ -2.42
SCFD1-217ENST00000555953 BAZ1AQ9NRL2 1556 aaPredicted RBP-0.08□□□□□ -2.42
SCFD1-217ENST00000555953 BSNQ9UPA5 3926 aa-0.08□□□□□ -2.42
SCFD1-217ENST00000555953 EPRSP07814 1512 aaKnown RBP-0.08□□□□□ -2.42
SCFD1-217ENST00000555953 C5P01031 1676 aa-0.08□□□□□ -2.42
SCFD1-217ENST00000555953 CLTCQ00610 1675 aaKnown RBP-0.08□□□□□ -2.42
SCFD1-217ENST00000555953 PKD1L1Q8TDX9 2849 aa-0.09□□□□□ -2.42
SCFD1-217ENST00000555953 DNAJC13O75165 2243 aa-0.09□□□□□ -2.42
SCFD1-217ENST00000555953 FANCAO15360 1455 aa-0.09□□□□□ -2.42
SCFD1-217ENST00000555953 TTC37Q6PGP7 1564 aa-0.09□□□□□ -2.42
SCFD1-217ENST00000555953 NMSQ5H8A3 153 aa-0.09□□□□□ -2.42
SCFD1-217ENST00000555953 MRPL34Q9BQ48 92 aaKnown RBP-0.09□□□□□ -2.42
SCFD1-217ENST00000555953 V9GYS6 101 aa-0.09□□□□□ -2.42
SCFD1-217ENST00000555953 ZNF831Q5JPB2 1677 aa-0.09□□□□□ -2.42
SCFD1-217ENST00000555953 LRP2P98164 4655 aa-0.09□□□□□ -2.42
SCFD1-217ENST00000555953 GOLGA4Q13439 2230 aaKnown RBP-0.1□□□□□ -2.43
SCFD1-217ENST00000555953 PRKDCP78527 4128 aaKnown RBP-0.1□□□□□ -2.43
SCFD1-217ENST00000555953 I3L3M4 83 aa-0.1□□□□□ -2.43
SCFD1-217ENST00000555953 HMGN3Q15651 99 aa-0.1□□□□□ -2.43
SCFD1-217ENST00000555953 S100A16Q96FQ6 103 aaKnown RBP-0.1□□□□□ -2.43
SCFD1-217ENST00000555953 USMG5Q96IX5 58 aa-0.1□□□□□ -2.43
SCFD1-217ENST00000555953 ABCC2Q92887 1545 aa-0.1□□□□□ -2.43
SCFD1-217ENST00000555953 URB1O60287 2271 aaKnown RBP-0.1□□□□□ -2.43
SCFD1-217ENST00000555953 RGPD1P0DJD0 1748 aa-0.1□□□□□ -2.43
SCFD1-217ENST00000555953 MAGI2Q86UL8 1455 aa-0.1□□□□□ -2.43
SCFD1-217ENST00000555953 ATRQ13535 2644 aa-0.11□□□□□ -2.43
SCFD1-217ENST00000555953 HECTD4Q9Y4D8 3996 aa-0.11□□□□□ -2.43
SCFD1-217ENST00000555953 MYO3AQ8NEV4 1616 aa-0.11□□□□□ -2.43
SCFD1-217ENST00000555953 CYB5AP00167 134 aa-0.11□□□□□ -2.43
SCFD1-217ENST00000555953 COX8AP10176 69 aa-0.11□□□□□ -2.43
SCFD1-217ENST00000555953 GNG2P59768 71 aa-0.11□□□□□ -2.43
SCFD1-217ENST00000555953 PEA15Q15121 130 aa-0.11□□□□□ -2.43
SCFD1-217ENST00000555953 LRRC7Q96NW7 1537 aa-0.12□□□□□ -2.43
SCFD1-217ENST00000555953 TMEM131LA2VDJ0 1609 aa-0.12□□□□□ -2.43
SCFD1-217ENST00000555953 USP32Q8NFA0 1604 aa-0.12□□□□□ -2.43
SCFD1-217ENST00000555953 LOC730098B7Z3J9 87 aa-0.12□□□□□ -2.43
SCFD1-217ENST00000555953 RGPD2P0DJD1 1756 aa-0.12□□□□□ -2.43
SCFD1-217ENST00000555953 CRYBG1Q9Y4K1 1723 aa-0.13□□□□□ -2.43
SCFD1-217ENST00000555953 FSIP2Q5CZC0 6907 aa-0.13□□□□□ -2.43
SCFD1-217ENST00000555953 ATP7BP35670 1465 aa-0.13□□□□□ -2.43
SCFD1-217ENST00000555953 SPTY2D1-AS1A0A0U1RR47 76 aa-0.13□□□□□ -2.43
SCFD1-217ENST00000555953 MYMXA0A1B0GTQ4 84 aa-0.13□□□□□ -2.43
SCFD1-217ENST00000555953 COX7BP24311 80 aa-0.13□□□□□ -2.43
SCFD1-217ENST00000555953 LRP1BQ9NZR2 4599 aa-0.13□□□□□ -2.43
SCFD1-217ENST00000555953 PLIN4Q96Q06 1357 aa-0.14□□□□□ -2.43
SCFD1-217ENST00000555953 TRAV21A0A0B4J279 112 aa-0.14□□□□□ -2.43
SCFD1-217ENST00000555953 SPINK4O60575 86 aa-0.14□□□□□ -2.43
SCFD1-217ENST00000555953 HEPN1Q6WQI6 88 aa-0.14□□□□□ -2.43
SCFD1-217ENST00000555953 GAFA1Q96PS6 74 aa-0.14□□□□□ -2.43
SCFD1-217ENST00000555953 KIAA1551Q9HCM1 1747 aa-0.14□□□□□ -2.43
SCFD1-217ENST00000555953 REV3LO60673 3130 aa-0.14□□□□□ -2.43
SCFD1-217ENST00000555953 NSD1Q96L73 2696 aaPredicted RBP-0.14□□□□□ -2.43
SCFD1-217ENST00000555953 LRRC37AA6NMS7 1700 aa-0.15□□□□□ -2.43
SCFD1-217ENST00000555953 ALKQ9UM73 1620 aa-0.15□□□□□ -2.43
SCFD1-217ENST00000555953 A0A1B0GUT8 65 aa-0.15□□□□□ -2.43
SCFD1-217ENST00000555953 PVALEFA0A1B0GWK0 134 aa-0.15□□□□□ -2.43
SCFD1-217ENST00000555953 M0R2T5 61 aa-0.15□□□□□ -2.43
SCFD1-217ENST00000555953 PLGLAQ15195 96 aa-0.15□□□□□ -2.43
SCFD1-217ENST00000555953 WFDC13Q8IUB5 93 aa-0.15□□□□□ -2.43
SCFD1-217ENST00000555953 ABCC3O15438 1527 aa-0.16□□□□□ -2.43
SCFD1-217ENST00000555953 NDUFA3O95167 84 aa-0.16□□□□□ -2.44
SCFD1-217ENST00000555953 LINC00643Q86TS7 51 aa-0.16□□□□□ -2.44
SCFD1-217ENST00000555953 MUC2Q02817 5179 aa-0.16□□□□□ -2.44
SCFD1-217ENST00000555953 SPTA1P02549 2419 aa-0.16□□□□□ -2.44
SCFD1-217ENST00000555953 MED14O60244 1454 aa-0.16□□□□□ -2.44
SCFD1-217ENST00000555953 NCOA2Q15596 1464 aa-0.16□□□□□ -2.44
SCFD1-217ENST00000555953 KIF14Q15058 1648 aa-0.16□□□□□ -2.44
SCFD1-217ENST00000555953 ANKRD36A6QL64 1941 aa-0.17□□□□□ -2.44
SCFD1-217ENST00000555953 CEBPZOSA8MTT3 80 aa-0.17□□□□□ -2.44
SCFD1-217ENST00000555953 SMIM11AP58511 58 aa-0.17□□□□□ -2.44
SCFD1-217ENST00000555953 SNRPFP62306 86 aaKnown RBP-0.17□□□□□ -2.44
SCFD1-217ENST00000555953 CSPG4Q6UVK1 2322 aa-0.17□□□□□ -2.44
SCFD1-217ENST00000555953 WFDC9Q8NEX5 89 aa-0.17□□□□□ -2.44
SCFD1-217ENST00000555953 DIP2BQ9P265 1576 aa-0.17□□□□□ -2.44
SCFD1-217ENST00000555953 SSPOA2VEC9 5147 aa-0.17□□□□□ -2.44
SCFD1-217ENST00000555953 RGPD4Q7Z3J3 1758 aa-0.17□□□□□ -2.44
SCFD1-217ENST00000555953 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-0.18□□□□□ -2.443e-6■■■□□ 19.1
SCFD1-217ENST00000555953 MYH4Q9Y623 1939 aa-0.18□□□□□ -2.44
SCFD1-217ENST00000555953 SPRR2BP35325 72 aa-0.18□□□□□ -2.44
SCFD1-217ENST00000555953 SETXQ7Z333 2677 aaKnown RBP-0.18□□□□□ -2.44
SCFD1-217ENST00000555953 CCDC141Q6ZP82 1450 aa-0.18□□□□□ -2.44
SCFD1-217ENST00000555953 COL6A3P12111 3177 aa-0.18□□□□□ -2.44
SCFD1-217ENST00000555953 RGPD3A6NKT7 1758 aaPredicted RBP-0.19□□□□□ -2.44
SCFD1-217ENST00000555953 STAB1Q9NY15 2570 aa-0.19□□□□□ -2.44
SCFD1-217ENST00000555953 EP300Q09472 2414 aaPredicted RBP-0.19□□□□□ -2.44
SCFD1-217ENST00000555953 IFI6P09912 130 aa-0.19□□□□□ -2.44
SCFD1-217ENST00000555953 KRTAP6-2Q3LI66 62 aa-0.19□□□□□ -2.44
SCFD1-217ENST00000555953 RABAC1Q9UI14 185 aa-0.19□□□□□ -2.44
SCFD1-217ENST00000555953 CEP170BQ9Y4F5 1589 aaPredicted RBP-0.19□□□□□ -2.44
SCFD1-217ENST00000555953 DCHS2Q6V1P9 2916 aa-0.2□□□□□ -2.44
SCFD1-217ENST00000555953 CLIP1P30622 1438 aa-0.2□□□□□ -2.44
SCFD1-217ENST00000555953 FLNAP21333 2647 aaKnown RBP-0.2□□□□□ -2.44
SCFD1-217ENST00000555953 PKD1L3Q7Z443 1732 aa-0.2□□□□□ -2.44
SCFD1-217ENST00000555953 DOT1LQ8TEK3 1739 aa-0.2□□□□□ -2.44
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms