RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 CSPG4Q6UVK1 2322 aa6.54□□□□□ -1.36
CLIP1-214ENST00000540539 TLN2Q9Y4G6 2542 aa6.54□□□□□ -1.36
CLIP1-214ENST00000540539 DIRC1Q969H9 104 aa6.53□□□□□ -1.36
CLIP1-214ENST00000540539 ACANP16112 2415 aa6.53□□□□□ -1.36
CLIP1-214ENST00000540539 CHKB-CPT1BH3BT56 60 aa6.53□□□□□ -1.36
CLIP1-214ENST00000540539 Q6ZSN1 163 aa6.53□□□□□ -1.36
CLIP1-214ENST00000540539 C7orf65Q6ZTY9 151 aa6.53□□□□□ -1.36
CLIP1-214ENST00000540539 PRR26Q8N8Z3 221 aa6.53□□□□□ -1.36
CLIP1-214ENST00000540539 Q8N9L7 120 aa6.53□□□□□ -1.36
CLIP1-214ENST00000540539 MAPK1IP1LQ8NDC0 245 aa6.53□□□□□ -1.36
CLIP1-214ENST00000540539 CELSR1Q9NYQ6 3014 aa6.52□□□□□ -1.37
CLIP1-214ENST00000540539 AKAP9Q99996 3911 aa6.52□□□□□ -1.37
CLIP1-214ENST00000540539 HCG22E2RYF7 251 aa6.52□□□□□ -1.37
CLIP1-214ENST00000540539 NANOS2P60321 138 aaKnown RBP6.52□□□□□ -1.37
CLIP1-214ENST00000540539 COX7B2Q8TF08 81 aa6.52□□□□□ -1.37
CLIP1-214ENST00000540539 ODF3BA8MYP8 253 aa6.52□□□□□ -1.37
CLIP1-214ENST00000540539 OTOGQ6ZRI0 2925 aa6.51□□□□□ -1.37
CLIP1-214ENST00000540539 LCA10Q71F78 164 aa6.51□□□□□ -1.37
CLIP1-214ENST00000540539 ZNF469Q96JG9 3925 aaPredicted RBP6.51□□□□□ -1.37
CLIP1-214ENST00000540539 B4DSR2 109 aa6.51□□□□□ -1.37
CLIP1-214ENST00000540539 C9orf66Q5T8R8 295 aa6.51□□□□□ -1.37
CLIP1-214ENST00000540539 LINC01006Q8NI28 216 aa6.51□□□□□ -1.37
CLIP1-214ENST00000540539 G3V318 75 aa6.5□□□□□ -1.37
CLIP1-214ENST00000540539 ATP6V0E1O15342 81 aa6.5□□□□□ -1.37
CLIP1-214ENST00000540539 MSMBP08118 114 aa6.5□□□□□ -1.37
CLIP1-214ENST00000540539 KLK9Q2XQG4 91 aa6.5□□□□□ -1.37
CLIP1-214ENST00000540539 Q8N9W7 124 aa6.5□□□□□ -1.37
CLIP1-214ENST00000540539 TRBV6-8A0A0A6YYG3 113 aa6.5□□□□□ -1.37
CLIP1-214ENST00000540539 IGKV4-1P06312 121 aa6.5□□□□□ -1.37
CLIP1-214ENST00000540539 TOMM7Q9P0U1 55 aa6.5□□□□□ -1.37
CLIP1-214ENST00000540539 SVEP1Q4LDE5 3571 aa6.49□□□□□ -1.37
CLIP1-214ENST00000540539 MINOS1Q5TGZ0 78 aa6.49□□□□□ -1.37
CLIP1-214ENST00000540539 IGKV3-20P01619 116 aa6.49□□□□□ -1.37
CLIP1-214ENST00000540539 IGHV4-31P0DP07 118 aa6.49□□□□□ -1.37
CLIP1-214ENST00000540539 SPATA3Q8NHX4 192 aa6.49□□□□□ -1.37
CLIP1-214ENST00000540539 K7EQD1 137 aa6.48□□□□□ -1.37
CLIP1-214ENST00000540539 PRB2P02812 416 aaPredicted RBP6.48□□□□□ -1.37
CLIP1-214ENST00000540539 PRR4Q16378 134 aa6.48□□□□□ -1.37
CLIP1-214ENST00000540539 MUC7Q8TAX7 377 aa6.48□□□□□ -1.37
CLIP1-214ENST00000540539 SONP18583 2426 aaKnown RBP6.48□□□□□ -1.37
CLIP1-214ENST00000540539 CYP4F30PQ9H0H9 118 aa6.48□□□□□ -1.37
CLIP1-214ENST00000540539 PDE6GP18545 87 aa6.47□□□□□ -1.37
CLIP1-214ENST00000540539 C11orf44Q8N8P7 122 aa6.47□□□□□ -1.37
CLIP1-214ENST00000540539 LCE6AA0A183 80 aa6.46□□□□□ -1.38
CLIP1-214ENST00000540539 PRR3P79522 188 aaKnown RBP6.46□□□□□ -1.38
CLIP1-214ENST00000540539 LINC00612Q8N6U2 182 aa6.46□□□□□ -1.38
CLIP1-214ENST00000540539 HIVEP1P15822 2718 aa6.46□□□□□ -1.38
CLIP1-214ENST00000540539 SPINK13Q1W4C9 94 aa6.46□□□□□ -1.38
CLIP1-214ENST00000540539 ZCCHC13Q8WW36 166 aaKnown RBP6.46□□□□□ -1.38
CLIP1-214ENST00000540539 LINC00575Q6W349 94 aa6.45□□□□□ -1.38
CLIP1-214ENST00000540539 CELA1Q9UNI1 258 aa6.45□□□□□ -1.38
CLIP1-214ENST00000540539 MXRA5Q9NR99 2828 aa6.45□□□□□ -1.38
CLIP1-214ENST00000540539 IGLV4-60A0A075B6I1 120 aa6.45□□□□□ -1.38
CLIP1-214ENST00000540539 C6orf99Q4VX62 202 aa6.45□□□□□ -1.38
CLIP1-214ENST00000540539 FAM30AQ9NZY2 134 aa6.45□□□□□ -1.38
CLIP1-214ENST00000540539 PRR15LQ9BU68 103 aa6.44□□□□□ -1.38
CLIP1-214ENST00000540539 CDC42SE2Q9NRR3 84 aa6.44□□□□□ -1.38
CLIP1-214ENST00000540539 NKAPP1Q8N9T2 125 aa6.44□□□□□ -1.38
CLIP1-214ENST00000540539 RHPN1-AS1Q9BWJ2 59 aa6.44□□□□□ -1.38
CLIP1-214ENST00000540539 MTORP42345 2549 aa6.44□□□□□ -1.38
CLIP1-214ENST00000540539 CYSRT1A8MQ03 144 aa6.43□□□□□ -1.38
CLIP1-214ENST00000540539 FAM229AH3BQW9 127 aa6.43□□□□□ -1.38
CLIP1-214ENST00000540539 NDUFA4O00483 81 aa6.43□□□□□ -1.38
CLIP1-214ENST00000540539 IGHV4-38-2P0DP08 117 aa6.43□□□□□ -1.38
CLIP1-214ENST00000540539 HTN1P15515 57 aa6.43□□□□□ -1.38
CLIP1-214ENST00000540539 KRTAP1-1Q07627 177 aa6.43□□□□□ -1.38
CLIP1-214ENST00000540539 Q8N9P0 234 aaPredicted RBP6.43□□□□□ -1.38
CLIP1-214ENST00000540539 IGHV3-53P01767 116 aa6.43□□□□□ -1.38
CLIP1-214ENST00000540539 HIVEP2P31629 2446 aa6.43□□□□□ -1.38
CLIP1-214ENST00000540539 MAST4O15021 2626 aa6.42□□□□□ -1.38
CLIP1-214ENST00000540539 F8P00451 2351 aa6.42□□□□□ -1.38
CLIP1-214ENST00000540539 A6NED7 52 aa6.42□□□□□ -1.38
CLIP1-214ENST00000540539 C10orf25Q5T742 122 aa6.42□□□□□ -1.38
CLIP1-214ENST00000540539 BRD3OSQ6XYD6 125 aa6.42□□□□□ -1.38
CLIP1-214ENST00000540539 LIMD2Q9BT23 127 aa6.42□□□□□ -1.38
CLIP1-214ENST00000540539 SMIM29Q86T20 159 aa6.42□□□□□ -1.38
CLIP1-214ENST00000540539 MINOS1-NBL1R4GNA1 71 aa6.42□□□□□ -1.38
CLIP1-214ENST00000540539 PRM2P04554 102 aa6.41□□□□□ -1.38
CLIP1-214ENST00000540539 SMR3AQ99954 134 aa6.41□□□□□ -1.38
CLIP1-214ENST00000540539 A8MTW9 85 aa6.41□□□□□ -1.38
CLIP1-214ENST00000540539 Q6ZQY7 126 aa6.4□□□□□ -1.38
CLIP1-214ENST00000540539 Q75L30 129 aa6.4□□□□□ -1.38
CLIP1-214ENST00000540539 FSHBP01225 129 aa6.4□□□□□ -1.39
CLIP1-214ENST00000540539 MOBPQ13875 183 aa6.4□□□□□ -1.39
CLIP1-214ENST00000540539 NSD1Q96L73 2696 aaPredicted RBP6.39□□□□□ -1.39
CLIP1-214ENST00000540539 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.39□□□□□ -1.39
CLIP1-214ENST00000540539 CDC42SE1Q9NRR8 79 aa6.39□□□□□ -1.39
CLIP1-214ENST00000540539 C2CD3Q4AC94 2353 aa6.38□□□□□ -1.39
CLIP1-214ENST00000540539 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.38□□□□□ -1.39
CLIP1-214ENST00000540539 TEP1Q99973 2627 aaKnown RBP6.37□□□□□ -1.39
CLIP1-214ENST00000540539 IGHV3OR16-9A0A0B4J2B5 98 aa6.37□□□□□ -1.39
CLIP1-214ENST00000540539 IGKV3OR2-268A0A0C4DH90 116 aa6.37□□□□□ -1.39
CLIP1-214ENST00000540539 IGHV3-11P01762 117 aa6.37□□□□□ -1.39
CLIP1-214ENST00000540539 DEFB112Q30KQ8 113 aa6.37□□□□□ -1.39
CLIP1-214ENST00000540539 LINC01554Q52M75 96 aa6.36□□□□□ -1.39
CLIP1-214ENST00000540539 PRAC1Q96KF2 57 aa6.36□□□□□ -1.39
CLIP1-214ENST00000540539 ANK3Q12955 4377 aaKnown RBP6.36□□□□□ -1.39
CLIP1-214ENST00000540539 FN1P02751 2386 aaKnown RBP6.36□□□□□ -1.39
CLIP1-214ENST00000540539 TRGV2A0A075B6R0 118 aa6.35□□□□□ -1.39
CLIP1-214ENST00000540539 CCL24O00175 119 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms