RNA–Protein interactions for RNA: ENST00000511424.5

LIMCH1-212, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-212ENST00000511424 IGHV3-30P01768 117 aa1.55□□□□□ -2.16
LIMCH1-212ENST00000511424 IGHV3-33P01772 117 aa1.55□□□□□ -2.16
LIMCH1-212ENST00000511424 IGHV3-30-3P0DP02 117 aa1.55□□□□□ -2.16
LIMCH1-212ENST00000511424 IGHV3-30-5P0DP03 117 aa1.55□□□□□ -2.16
LIMCH1-212ENST00000511424 HINT1P49773 126 aaPredicted RBP1.55□□□□□ -2.16
LIMCH1-212ENST00000511424 DAD1P61803 113 aa1.55□□□□□ -2.16
LIMCH1-212ENST00000511424 Q0VG73 95 aa1.55□□□□□ -2.16
LIMCH1-212ENST00000511424 WFDC2Q14508 124 aa1.55□□□□□ -2.16
LIMCH1-212ENST00000511424 KRTAP21-3Q3LHN1 58 aa1.55□□□□□ -2.16
LIMCH1-212ENST00000511424 TMEM97Q5BJF2 176 aa1.55□□□□□ -2.16
LIMCH1-212ENST00000511424 OR10J3Q5JRS4 329 aa1.55□□□□□ -2.16
LIMCH1-212ENST00000511424 RASL11AQ6T310 242 aa1.55□□□□□ -2.16
LIMCH1-212ENST00000511424 Q6ZUT4 128 aa1.55□□□□□ -2.16
LIMCH1-212ENST00000511424 DAZ4Q86SG3 579 aaKnown RBP1.55□□□□□ -2.16
LIMCH1-212ENST00000511424 WFDC10BQ8IUB3 73 aa1.55□□□□□ -2.16
LIMCH1-212ENST00000511424 B9D2Q9BPU9 175 aa1.55□□□□□ -2.16
LIMCH1-212ENST00000511424 TMEM70Q9BUB7 260 aa1.55□□□□□ -2.16
LIMCH1-212ENST00000511424 TMEM126AQ9H061 195 aa1.55□□□□□ -2.16
LIMCH1-212ENST00000511424 DPH3P1Q9H4G8 78 aa1.55□□□□□ -2.16
LIMCH1-212ENST00000511424 SPANXB1Q9NS25 103 aaPredicted RBP1.55□□□□□ -2.16
LIMCH1-212ENST00000511424 HHLA3Q9XRX5 114 aa1.55□□□□□ -2.16
LIMCH1-212ENST00000511424 IGLV10-54A0A075B6I4 117 aa1.54□□□□□ -2.16
LIMCH1-212ENST00000511424 DEFB131BA0A096LNP1 70 aa1.54□□□□□ -2.16
LIMCH1-212ENST00000511424 H3BRM9 83 aa1.54□□□□□ -2.16
LIMCH1-212ENST00000511424 J3QR89 54 aa1.54□□□□□ -2.16
LIMCH1-212ENST00000511424 HLA-DQA1P01909 254 aa1.54□□□□□ -2.16
LIMCH1-212ENST00000511424 C3orf79P0CE67 100 aa1.54□□□□□ -2.16
LIMCH1-212ENST00000511424 SPART-AS1P0CW21 52 aa1.54□□□□□ -2.16
LIMCH1-212ENST00000511424 MIFP14174 115 aa1.54□□□□□ -2.16
LIMCH1-212ENST00000511424 CMC4P56277 68 aaPredicted RBP1.54□□□□□ -2.16
LIMCH1-212ENST00000511424 UBE2D3P61077 147 aa1.54□□□□□ -2.16
LIMCH1-212ENST00000511424 UBE2D2P62837 147 aa1.54□□□□□ -2.16
LIMCH1-212ENST00000511424 SEC11AP67812 179 aa1.54□□□□□ -2.16
LIMCH1-212ENST00000511424 C6orf99Q4VX62 202 aa1.54□□□□□ -2.16
LIMCH1-212ENST00000511424 Q6Q795 121 aa1.54□□□□□ -2.16
LIMCH1-212ENST00000511424 LYPD5Q6UWN5 251 aa1.54□□□□□ -2.16
LIMCH1-212ENST00000511424 ATP5L2Q7Z4Y8 100 aa1.54□□□□□ -2.16
LIMCH1-212ENST00000511424 BAGE3Q86Y29 109 aa1.54□□□□□ -2.16
LIMCH1-212ENST00000511424 ORMDL3Q8N138 153 aa1.54□□□□□ -2.16
LIMCH1-212ENST00000511424 Q8N8P6 123 aa1.54□□□□□ -2.16
LIMCH1-212ENST00000511424 ATP6V0E2Q8NHE4 81 aa1.54□□□□□ -2.16
LIMCH1-212ENST00000511424 AP1S3Q96PC3 154 aa1.54□□□□□ -2.16
LIMCH1-212ENST00000511424 ANAPC13Q9BS18 74 aa1.54□□□□□ -2.16
LIMCH1-212ENST00000511424 SMIM2Q9BVW6 85 aa1.54□□□□□ -2.16
LIMCH1-212ENST00000511424 ST20Q9HBF5 79 aa1.54□□□□□ -2.16
LIMCH1-212ENST00000511424 APLNQ9ULZ1 77 aa1.54□□□□□ -2.16
LIMCH1-212ENST00000511424 TP53TG1Q9Y2A0 90 aa1.54□□□□□ -2.16
LIMCH1-212ENST00000511424 LINC00588Q9Y4M8 146 aa1.54□□□□□ -2.16
LIMCH1-212ENST00000511424 EPPK1P58107 5090 aaKnown RBP1.54□□□□□ -2.16
LIMCH1-212ENST00000511424 IGLV1-50A0A075B6I6 118 aa1.53□□□□□ -2.16
LIMCH1-212ENST00000511424 IGHV3-64A0A075B6Q5 118 aa1.53□□□□□ -2.16
LIMCH1-212ENST00000511424 TRAV9-1A0A075B6T8 112 aa1.53□□□□□ -2.16
LIMCH1-212ENST00000511424 IGKV2D-26A0A0A0MRZ7 120 aa1.53□□□□□ -2.16
LIMCH1-212ENST00000511424 TRBV6-5A0A0K0K1A5 114 aa1.53□□□□□ -2.16
LIMCH1-212ENST00000511424 A0A1W2PPM0 123 aa1.53□□□□□ -2.16
LIMCH1-212ENST00000511424 LINC01546A6NGU7 62 aa1.53□□□□□ -2.16
LIMCH1-212ENST00000511424 IGIPA6NJ69 53 aa1.53□□□□□ -2.16
LIMCH1-212ENST00000511424 A8MWV9 139 aa1.53□□□□□ -2.16
LIMCH1-212ENST00000511424 CCDC179H3BU77 68 aa1.53□□□□□ -2.16
LIMCH1-212ENST00000511424 J3KT08 172 aa1.53□□□□□ -2.16
LIMCH1-212ENST00000511424 LECT2O14960 151 aa1.53□□□□□ -2.16
LIMCH1-212ENST00000511424 MT-ATP8P03928 68 aa1.53□□□□□ -2.16
LIMCH1-212ENST00000511424 ATP5G1P05496 136 aa1.53□□□□□ -2.16
LIMCH1-212ENST00000511424 PKHD1P08F94 4074 aa1.53□□□□□ -2.16
LIMCH1-212ENST00000511424 TSPEAR-AS2P59090 65 aa1.53□□□□□ -2.16
LIMCH1-212ENST00000511424 KRTDAPP60985 99 aa1.53□□□□□ -2.16
LIMCH1-212ENST00000511424 RPS28P62857 69 aaKnown RBP1.53□□□□□ -2.16
LIMCH1-212ENST00000511424 SYCNQ0VAF6 134 aa1.53□□□□□ -2.16
LIMCH1-212ENST00000511424 LGALS9BQ3B8N2 356 aa1.53□□□□□ -2.16
LIMCH1-212ENST00000511424 MPV17L2Q567V2 206 aa1.53□□□□□ -2.16
LIMCH1-212ENST00000511424 KRTAP26-1Q6PEX3 210 aa1.53□□□□□ -2.16
LIMCH1-212ENST00000511424 ENHOQ6UWT2 76 aa1.53□□□□□ -2.16
LIMCH1-212ENST00000511424 C2orf91Q6ZV80 131 aa1.53□□□□□ -2.16
LIMCH1-212ENST00000511424 LINC00337Q8N6G1 96 aa1.53□□□□□ -2.16
LIMCH1-212ENST00000511424 SPANXCQ9NY87 97 aa1.53□□□□□ -2.16
LIMCH1-212ENST00000511424 CYSLTR1Q9Y271 337 aa1.53□□□□□ -2.16
LIMCH1-212ENST00000511424 KLK5Q9Y337 293 aaPredicted RBP1.53□□□□□ -2.16
LIMCH1-212ENST00000511424 TRBV7-3A0A075B6L6 115 aa1.52□□□□□ -2.17
LIMCH1-212ENST00000511424 TRAV8-3A0A0A6YYJ7 113 aa1.52□□□□□ -2.17
LIMCH1-212ENST00000511424 TRAV13-1A0A0B4J241 112 aa1.52□□□□□ -2.17
LIMCH1-212ENST00000511424 TRAV8-4A0A0B4J246 113 aa1.52□□□□□ -2.17
LIMCH1-212ENST00000511424 TRBV27A0A0K0K1C4 114 aa1.52□□□□□ -2.17
LIMCH1-212ENST00000511424 A0A0U1RQV1 116 aa1.52□□□□□ -2.17
LIMCH1-212ENST00000511424 TRBV6-4A0A1B0GX49 114 aa1.52□□□□□ -2.17
LIMCH1-212ENST00000511424 C11orf86A6NJI1 115 aa1.52□□□□□ -2.17
LIMCH1-212ENST00000511424 TMEM262E9PQX1 116 aa1.52□□□□□ -2.17
LIMCH1-212ENST00000511424 I3L3M4 83 aa1.52□□□□□ -2.17
LIMCH1-212ENST00000511424 SPINK8P0C7L1 97 aa1.52□□□□□ -2.17
LIMCH1-212ENST00000511424 FGF6P10767 208 aa1.52□□□□□ -2.17
LIMCH1-212ENST00000511424 FCER1GP30273 86 aa1.52□□□□□ -2.17
LIMCH1-212ENST00000511424 HAMPP81172 84 aa1.52□□□□□ -2.17
LIMCH1-212ENST00000511424 FAM19A5Q7Z5A7 132 aaPredicted RBP1.52□□□□□ -2.17
LIMCH1-212ENST00000511424 C5orf38Q86SI9 138 aa1.52□□□□□ -2.17
LIMCH1-212ENST00000511424 LINC00269Q8N2A0 174 aa1.52□□□□□ -2.17
LIMCH1-212ENST00000511424 OR13C6PQ8NH95 151 aa1.52□□□□□ -2.17
LIMCH1-212ENST00000511424 CIRBP-AS1Q8TBR5 109 aa1.52□□□□□ -2.17
LIMCH1-212ENST00000511424 BORCS7Q96B45 105 aa1.52□□□□□ -2.17
LIMCH1-212ENST00000511424 TOMM6Q96B49 74 aa1.52□□□□□ -2.17
LIMCH1-212ENST00000511424 PLEKHB2Q96CS7 222 aa1.52□□□□□ -2.17
LIMCH1-212ENST00000511424 SCGB3A1Q96QR1 104 aa1.52□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms