RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 C1orf137Q5JT78 98 aa0.97□□□□□ -2.25
NUP54-208ENST00000508604 FAM27BQ5VT28 67 aa0.97□□□□□ -2.25
NUP54-208ENST00000508604 CSAG1Q6PB30 78 aa0.97□□□□□ -2.25
NUP54-208ENST00000508604 ADM2Q7Z4H4 148 aa0.97□□□□□ -2.25
NUP54-208ENST00000508604 CIRBP-AS1Q8TBR5 109 aa0.97□□□□□ -2.25
NUP54-208ENST00000508604 C20orf166-AS1Q96NR2 134 aa0.97□□□□□ -2.25
NUP54-208ENST00000508604 TTTY12Q9BZ98 90 aa0.97□□□□□ -2.25
NUP54-208ENST00000508604 WFDC10AQ9H1F0 79 aa0.97□□□□□ -2.25
NUP54-208ENST00000508604 KCNQ1DNQ9H478 68 aa0.97□□□□□ -2.25
NUP54-208ENST00000508604 DOCK10Q96BY6 2186 aa0.96□□□□□ -2.26
NUP54-208ENST00000508604 DNAJC13O75165 2243 aa0.96□□□□□ -2.26
NUP54-208ENST00000508604 TRGV2A0A075B6R0 118 aa0.96□□□□□ -2.26
NUP54-208ENST00000508604 IGHV1-3A0A0C4DH29 117 aa0.96□□□□□ -2.26
NUP54-208ENST00000508604 ETDCA0A1B0GVM5 59 aa0.96□□□□□ -2.26
NUP54-208ENST00000508604 IGKV2-29A2NJV5 120 aaPredicted RBP0.96□□□□□ -2.26
NUP54-208ENST00000508604 J3QKU1 62 aa0.96□□□□□ -2.26
NUP54-208ENST00000508604 NDUFA4O00483 81 aa0.96□□□□□ -2.26
NUP54-208ENST00000508604 TFF1P04155 84 aa0.96□□□□□ -2.26
NUP54-208ENST00000508604 MGPP08493 103 aa0.96□□□□□ -2.26
NUP54-208ENST00000508604 POLR2KP53803 58 aaKnown RBP0.96□□□□□ -2.26
NUP54-208ENST00000508604 KRTAP26-1Q6PEX3 210 aa0.96□□□□□ -2.26
NUP54-208ENST00000508604 SPATA8Q6RVD6 105 aa0.96□□□□□ -2.26
NUP54-208ENST00000508604 DMAC1Q96GE9 116 aa0.96□□□□□ -2.26
NUP54-208ENST00000508604 SPRR4Q96PI1 79 aa0.96□□□□□ -2.26
NUP54-208ENST00000508604 GAFA1Q96PS6 74 aa0.96□□□□□ -2.26
NUP54-208ENST00000508604 CACNA1DQ01668 2161 aa0.95□□□□□ -2.26
NUP54-208ENST00000508604 IGKV1D-37A0A075B6S9 117 aa0.95□□□□□ -2.26
NUP54-208ENST00000508604 UQCR11O14957 56 aa0.95□□□□□ -2.26
NUP54-208ENST00000508604 P0C880 135 aa0.95□□□□□ -2.26
NUP54-208ENST00000508604 KRTAP25-1Q3LHN0 102 aa0.95□□□□□ -2.26
NUP54-208ENST00000508604 SPINK9Q5DT21 86 aa0.95□□□□□ -2.26
NUP54-208ENST00000508604 TMEM105Q8N8V8 129 aa0.95□□□□□ -2.26
NUP54-208ENST00000508604 Q8TAT8 98 aa0.95□□□□□ -2.26
NUP54-208ENST00000508604 SMIM11BQ8TCY0 68 aa0.95□□□□□ -2.26
NUP54-208ENST00000508604 TNCP24821 2201 aa0.95□□□□□ -2.26
NUP54-208ENST00000508604 CACNA1CQ13936 2221 aa0.95□□□□□ -2.26
NUP54-208ENST00000508604 KIAA0100Q14667 2235 aaKnown RBP0.95□□□□□ -2.26
NUP54-208ENST00000508604 COL4A5P29400 1685 aa0.94□□□□□ -2.26
NUP54-208ENST00000508604 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.94□□□□□ -2.26
NUP54-208ENST00000508604 TRGV4A0A0C4DH28 118 aa0.94□□□□□ -2.26
NUP54-208ENST00000508604 ODF3BA8MYP8 253 aa0.94□□□□□ -2.26
NUP54-208ENST00000508604 CCL18P55774 89 aa0.94□□□□□ -2.26
NUP54-208ENST00000508604 SPINK7P58062 85 aa0.94□□□□□ -2.26
NUP54-208ENST00000508604 DEFB112Q30KQ8 113 aa0.94□□□□□ -2.26
NUP54-208ENST00000508604 Q6ZTI0 123 aa0.94□□□□□ -2.26
NUP54-208ENST00000508604 COA5Q86WW8 74 aa0.94□□□□□ -2.26
NUP54-208ENST00000508604 ZNRD1Q9P1U0 126 aa0.94□□□□□ -2.26
NUP54-208ENST00000508604 SDK2Q58EX2 2172 aa0.94□□□□□ -2.26
NUP54-208ENST00000508604 PRR14LQ5THK1 2151 aa0.94□□□□□ -2.26
NUP54-208ENST00000508604 MALRD1Q5VYJ5 2156 aa0.94□□□□□ -2.26
NUP54-208ENST00000508604 IGHV3-64A0A075B6Q5 118 aa0.94□□□□□ -2.26
NUP54-208ENST00000508604 TRBV6-4A0A1B0GX49 114 aa0.94□□□□□ -2.26
NUP54-208ENST00000508604 NUPR2A6NF83 97 aa0.94□□□□□ -2.26
NUP54-208ENST00000508604 A8MUU9 505 aa0.94□□□□□ -2.26
NUP54-208ENST00000508604 H3BRN7 92 aa0.94□□□□□ -2.26
NUP54-208ENST00000508604 MRPL33O75394 65 aaKnown RBP0.94□□□□□ -2.26
NUP54-208ENST00000508604 CCL3L1P16619 93 aa0.94□□□□□ -2.26
NUP54-208ENST00000508604 COX7BP24311 80 aa0.94□□□□□ -2.26
NUP54-208ENST00000508604 DEFB113Q30KQ7 82 aa0.94□□□□□ -2.26
NUP54-208ENST00000508604 C9orf163Q8N9P6 203 aa0.94□□□□□ -2.26
NUP54-208ENST00000508604 RNF5Q99942 180 aa0.94□□□□□ -2.26
NUP54-208ENST00000508604 NOTCH1P46531 2555 aa0.93□□□□□ -2.26
NUP54-208ENST00000508604 KNTC1P50748 2209 aa0.93□□□□□ -2.26
NUP54-208ENST00000508604 LINC00959A0A1B0GUT2 108 aa0.93□□□□□ -2.26
NUP54-208ENST00000508604 LINC00158P58513 81 aa0.93□□□□□ -2.26
NUP54-208ENST00000508604 RPL39P62891 51 aaKnown RBP0.93□□□□□ -2.26
NUP54-208ENST00000508604 TMEM167AQ8TBQ9 72 aa0.93□□□□□ -2.26
NUP54-208ENST00000508604 RPL39LQ96EH5 51 aaKnown RBP0.93□□□□□ -2.26
NUP54-208ENST00000508604 ALPK2Q86TB3 2170 aa0.93□□□□□ -2.26
NUP54-208ENST00000508604 BPTFQ12830 3046 aa0.93□□□□□ -2.26
NUP54-208ENST00000508604 SEC16AO15027 2179 aa0.92□□□□□ -2.26
NUP54-208ENST00000508604 PKD1L2Q7Z442 2459 aa0.92□□□□□ -2.26
NUP54-208ENST00000508604 IGKV3-7A0A075B6H7 116 aa0.92□□□□□ -2.26
NUP54-208ENST00000508604 DEFB131BA0A096LNP1 70 aa0.92□□□□□ -2.26
NUP54-208ENST00000508604 RNASE3P12724 160 aaKnown RBP0.92□□□□□ -2.26
NUP54-208ENST00000508604 COX17Q14061 63 aa0.92□□□□□ -2.26
NUP54-208ENST00000508604 DEFB134Q4QY38 66 aa0.92□□□□□ -2.26
NUP54-208ENST00000508604 LINC00575Q6W349 94 aa0.92□□□□□ -2.26
NUP54-208ENST00000508604 C4orf3Q8WVX3 66 aa0.92□□□□□ -2.26
NUP54-208ENST00000508604 UNC13CQ8NB66 2214 aa0.92□□□□□ -2.26
NUP54-208ENST00000508604 PRRC2BQ5JSZ5 2229 aaKnown RBP0.92□□□□□ -2.26
NUP54-208ENST00000508604 SPAG17Q6Q759 2223 aa0.92□□□□□ -2.26
NUP54-208ENST00000508604 DIDO1Q9BTC0 2240 aaKnown RBP0.92□□□□□ -2.26
NUP54-208ENST00000508604 COL6A3P12111 3177 aa0.91□□□□□ -2.26
NUP54-208ENST00000508604 IGKV2-40A0A087WW87 121 aaPredicted RBP0.91□□□□□ -2.26
NUP54-208ENST00000508604 TRGV1A0A0A0MS02 117 aa0.91□□□□□ -2.26
NUP54-208ENST00000508604 IGKV3OR2-268A0A0C4DH90 116 aa0.91□□□□□ -2.26
NUP54-208ENST00000508604 IGKV2D-40P01614 121 aaPredicted RBP0.91□□□□□ -2.26
NUP54-208ENST00000508604 WT1-ASQ06250 92 aa0.91□□□□□ -2.26
NUP54-208ENST00000508604 Q6ZQY7 126 aa0.91□□□□□ -2.26
NUP54-208ENST00000508604 CDKN2A-AS1Q9UH64 79 aa0.91□□□□□ -2.26
NUP54-208ENST00000508604 MINOS1-NBL1R4GNA1 71 aa0.91□□□□□ -2.26
NUP54-208ENST00000508604 USF3Q68DE3 2245 aa0.91□□□□□ -2.26
NUP54-208ENST00000508604 A0A096LNT2 108 aa0.91□□□□□ -2.26
NUP54-208ENST00000508604 A0A1B0GU33 70 aa0.91□□□□□ -2.26
NUP54-208ENST00000508604 A0A1B0GU69 56 aa0.91□□□□□ -2.26
NUP54-208ENST00000508604 M0QY20 66 aa0.91□□□□□ -2.26
NUP54-208ENST00000508604 IGLV7-43P04211 117 aa0.91□□□□□ -2.26
NUP54-208ENST00000508604 RPL39P5Q59GN2 51 aa0.91□□□□□ -2.26
NUP54-208ENST00000508604 Q8IZM0 81 aa0.91□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms