RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-208ENST00000486758 KLK12Q9UKR0 248 aa8.65□□□□□ -1.02
SHROOM3-208ENST00000486758 A0A0U1RQV1 116 aa8.64□□□□□ -1.03
SHROOM3-208ENST00000486758 IGHV4-28A0A0C4DH34 117 aa8.64□□□□□ -1.03
SHROOM3-208ENST00000486758 LINC00959A0A1B0GUT2 108 aa8.64□□□□□ -1.03
SHROOM3-208ENST00000486758 MPLKIPQ8TAP9 179 aa8.64□□□□□ -1.03
SHROOM3-208ENST00000486758 TRRAPQ9Y4A5 3859 aa8.64□□□□□ -1.03
SHROOM3-208ENST00000486758 TRBV6-4A0A1B0GX49 114 aa8.63□□□□□ -1.03
SHROOM3-208ENST00000486758 CCKP06307 115 aa8.63□□□□□ -1.03
SHROOM3-208ENST00000486758 FHL2Q14192 279 aa8.63□□□□□ -1.03
SHROOM3-208ENST00000486758 DEFB105AQ8NG35 78 aa8.63□□□□□ -1.03
SHROOM3-208ENST00000486758 BEAN1Q3B7T3 259 aa8.63□□□□□ -1.03
SHROOM3-208ENST00000486758 Q6ZQY7 126 aa8.62□□□□□ -1.03
SHROOM3-208ENST00000486758 Q8N3U1 123 aa8.62□□□□□ -1.03
SHROOM3-208ENST00000486758 PKD1L1Q8TDX9 2849 aa8.61□□□□□ -1.03
SHROOM3-208ENST00000486758 BRK1Q8WUW1 75 aa8.61□□□□□ -1.03
SHROOM3-208ENST00000486758 PRO0255Q9UI72 69 aa8.61□□□□□ -1.03
SHROOM3-208ENST00000486758 PRO0628Q9UI54 55 aa8.61□□□□□ -1.03
SHROOM3-208ENST00000486758 Q8N814 137 aa8.61□□□□□ -1.03
SHROOM3-208ENST00000486758 IGLV1-51P01701 117 aa8.6□□□□□ -1.03
SHROOM3-208ENST00000486758 RMI2Q96E14 147 aa8.6□□□□□ -1.03
SHROOM3-208ENST00000486758 FSHBP01225 129 aa8.6□□□□□ -1.03
SHROOM3-208ENST00000486758 RPS28P62857 69 aaKnown RBP8.6□□□□□ -1.03
SHROOM3-208ENST00000486758 C2orf48Q96LS8 159 aa8.6□□□□□ -1.03
SHROOM3-208ENST00000486758 IGHV3OR16-9A0A0B4J2B5 98 aa8.59□□□□□ -1.03
SHROOM3-208ENST00000486758 F8WEM9 126 aa8.59□□□□□ -1.03
SHROOM3-208ENST00000486758 CHCHD10Q8WYQ3 142 aaPredicted RBP8.59□□□□□ -1.04
SHROOM3-208ENST00000486758 A0A087WZ39 114 aa8.58□□□□□ -1.04
SHROOM3-208ENST00000486758 SPAG11BQ08648 103 aa8.58□□□□□ -1.04
SHROOM3-208ENST00000486758 HIGD2BQ4VC39 106 aa8.58□□□□□ -1.04
SHROOM3-208ENST00000486758 C6orf223Q8N319 242 aa8.57□□□□□ -1.04
SHROOM3-208ENST00000486758 NSD1Q96L73 2696 aaPredicted RBP8.57□□□□□ -1.04
SHROOM3-208ENST00000486758 REG3AQ06141 175 aa8.57□□□□□ -1.04
SHROOM3-208ENST00000486758 Q8N9L7 120 aa8.56□□□□□ -1.04
SHROOM3-208ENST00000486758 SPATA3Q8NHX4 192 aa8.56□□□□□ -1.04
SHROOM3-208ENST00000486758 APOC4P55056 127 aa8.56□□□□□ -1.04
SHROOM3-208ENST00000486758 UNQ6190/PRO20217Q6UXQ8 127 aa8.56□□□□□ -1.04
SHROOM3-208ENST00000486758 C22orf24Q9Y442 160 aa8.56□□□□□ -1.04
SHROOM3-208ENST00000486758 ZNF561-AS1K7EIQ3 104 aa8.55□□□□□ -1.04
SHROOM3-208ENST00000486758 NDUFC2O95298 119 aa8.55□□□□□ -1.04
SHROOM3-208ENST00000486758 LINC00336Q6ZUF6 198 aa8.55□□□□□ -1.04
SHROOM3-208ENST00000486758 C9orf66Q5T8R8 295 aa8.55□□□□□ -1.04
SHROOM3-208ENST00000486758 TENM1Q9UKZ4 2725 aa8.55□□□□□ -1.04
SHROOM3-208ENST00000486758 LRCOL1A6NCL2 159 aa8.55□□□□□ -1.04
SHROOM3-208ENST00000486758 OXLD1Q5BKU9 147 aa8.55□□□□□ -1.04
SHROOM3-208ENST00000486758 C1orf195Q5TG92 126 aa8.55□□□□□ -1.04
SHROOM3-208ENST00000486758 LINC01600Q96MT4 127 aa8.55□□□□□ -1.04
SHROOM3-208ENST00000486758 C3orf84H3BNL1 204 aa8.54□□□□□ -1.04
SHROOM3-208ENST00000486758 RETNQ9HD89 108 aa8.54□□□□□ -1.04
SHROOM3-208ENST00000486758 SPART-AS1P0CW21 52 aa8.53□□□□□ -1.04
SHROOM3-208ENST00000486758 TRAV10A0A0B4J240 114 aa8.53□□□□□ -1.04
SHROOM3-208ENST00000486758 GIG44P09565 113 aaPredicted RBP8.53□□□□□ -1.04
SHROOM3-208ENST00000486758 IGKV2D-24A0A075B6R9 120 aa8.52□□□□□ -1.04
SHROOM3-208ENST00000486758 FBN1P35555 2871 aaKnown RBP8.52□□□□□ -1.05
SHROOM3-208ENST00000486758 ATP5EP2Q5VTU8 51 aa8.52□□□□□ -1.05
SHROOM3-208ENST00000486758 KRTAP1-3Q8IUG1 177 aa8.52□□□□□ -1.05
SHROOM3-208ENST00000486758 Q6ZVQ6 151 aa8.51□□□□□ -1.05
SHROOM3-208ENST00000486758 M0R2N4 97 aa8.51□□□□□ -1.05
SHROOM3-208ENST00000486758 LINC01547P58512 204 aaPredicted RBP8.51□□□□□ -1.05
SHROOM3-208ENST00000486758 DIRC1Q969H9 104 aa8.51□□□□□ -1.05
SHROOM3-208ENST00000486758 CSMD3Q7Z407 3707 aa8.5□□□□□ -1.05
SHROOM3-208ENST00000486758 PRR4Q16378 134 aa8.5□□□□□ -1.05
SHROOM3-208ENST00000486758 Q5XG85 94 aa8.5□□□□□ -1.05
SHROOM3-208ENST00000486758 IL17DQ8TAD2 202 aa8.5□□□□□ -1.05
SHROOM3-208ENST00000486758 OXTP01178 125 aa8.5□□□□□ -1.05
SHROOM3-208ENST00000486758 NREPQ16612 68 aa8.5□□□□□ -1.05
SHROOM3-208ENST00000486758 Q8IZM0 81 aa8.5□□□□□ -1.05
SHROOM3-208ENST00000486758 KRTAP24-1Q3LI83 254 aa8.49□□□□□ -1.05
SHROOM3-208ENST00000486758 CELA1Q9UNI1 258 aa8.49□□□□□ -1.05
SHROOM3-208ENST00000486758 CAMK2N2Q96S95 79 aa8.49□□□□□ -1.05
SHROOM3-208ENST00000486758 TRBV10-3A0A0K0K1G6 114 aa8.48□□□□□ -1.05
SHROOM3-208ENST00000486758 C10orf25Q5T742 122 aa8.48□□□□□ -1.05
SHROOM3-208ENST00000486758 OTOGQ6ZRI0 2925 aa8.47□□□□□ -1.05
SHROOM3-208ENST00000486758 TRAV7A0A075B6U4 112 aa8.47□□□□□ -1.05
SHROOM3-208ENST00000486758 CD164L2Q6UWJ8 174 aa8.47□□□□□ -1.05
SHROOM3-208ENST00000486758 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.47□□□□□ -1.05
SHROOM3-208ENST00000486758 TM2D3Q9BRN9 247 aa8.47□□□□□ -1.05
SHROOM3-208ENST00000486758 COX7BP24311 80 aa8.46□□□□□ -1.06
SHROOM3-208ENST00000486758 PLAC8L1A1L4L8 177 aa8.46□□□□□ -1.06
SHROOM3-208ENST00000486758 IGHV4-30-4P0DP06 118 aa8.46□□□□□ -1.06
SHROOM3-208ENST00000486758 LINC00575Q6W349 94 aa8.46□□□□□ -1.06
SHROOM3-208ENST00000486758 LINC00474Q9P2X8 69 aa8.46□□□□□ -1.06
SHROOM3-208ENST00000486758 MIFP14174 115 aa8.44□□□□□ -1.06
SHROOM3-208ENST00000486758 SERP1Q9Y6X1 66 aa8.44□□□□□ -1.06
SHROOM3-208ENST00000486758 KRTAP10-3P60369 221 aa8.44□□□□□ -1.06
SHROOM3-208ENST00000486758 C19orf73Q9NVV2 129 aa8.43□□□□□ -1.06
SHROOM3-208ENST00000486758 BPY2O14599 106 aa8.43□□□□□ -1.06
SHROOM3-208ENST00000486758 X6R8D5 127 aa8.43□□□□□ -1.06
SHROOM3-208ENST00000486758 LYRM9A8MSI8 78 aa8.43□□□□□ -1.06
SHROOM3-208ENST00000486758 CSNK1G2-AS1Q8NCQ2 148 aa8.43□□□□□ -1.06
SHROOM3-208ENST00000486758 KRTAP21-3Q3LHN1 58 aa8.42□□□□□ -1.06
SHROOM3-208ENST00000486758 MUC7Q8TAX7 377 aa8.42□□□□□ -1.06
SHROOM3-208ENST00000486758 Q6ZQT0 140 aa8.42□□□□□ -1.06
SHROOM3-208ENST00000486758 NKAPP1Q8N9T2 125 aa8.42□□□□□ -1.06
SHROOM3-208ENST00000486758 FAM30AQ9NZY2 134 aa8.42□□□□□ -1.06
SHROOM3-208ENST00000486758 TRBV7-6A0A0J9YX20 115 aa8.41□□□□□ -1.06
SHROOM3-208ENST00000486758 NDUFC2-KCTD14E9PQ53 114 aa8.41□□□□□ -1.06
SHROOM3-208ENST00000486758 ZNF73O43830 326 aaPredicted RBP8.41□□□□□ -1.06
SHROOM3-208ENST00000486758 SMIM26A0A096LP01 95 aa8.41□□□□□ -1.06
SHROOM3-208ENST00000486758 C16orf95Q9H693 158 aa8.41□□□□□ -1.06
SHROOM3-208ENST00000486758 FUSP35637 526 aaKnown RBP eCLIP8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms