RNA–Protein interactions for RNA: ENST00000483925.1

PTCD3-214, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 576 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-214ENST00000483925 SPTY2D1-AS1A0A0U1RR47 76 aa1.37□□□□□ -2.19
PTCD3-214ENST00000483925 H3BVH4 76 aa1.37□□□□□ -2.19
PTCD3-214ENST00000483925 COX8AP10176 69 aa1.37□□□□□ -2.19
PTCD3-214ENST00000483925 DEFB123Q8N688 67 aa1.37□□□□□ -2.19
PTCD3-214ENST00000483925 RGPD1P0DJD0 1748 aa1.37□□□□□ -2.19
PTCD3-214ENST00000483925 ASXL1Q8IXJ9 1541 aa1.36□□□□□ -2.19
PTCD3-214ENST00000483925 NREPQ16612 68 aa1.36□□□□□ -2.19
PTCD3-214ENST00000483925 CRIPTQ9P021 101 aa1.36□□□□□ -2.19
PTCD3-214ENST00000483925 ASXL3Q9C0F0 2248 aa1.36□□□□□ -2.19
PTCD3-214ENST00000483925 NAV3Q8IVL0 2385 aa1.35□□□□□ -2.19
PTCD3-214ENST00000483925 Q8IZM0 81 aa1.35□□□□□ -2.19
PTCD3-214ENST00000483925 CADP27708 2225 aa1.35□□□□□ -2.19
PTCD3-214ENST00000483925 ANKRD36A6QL64 1941 aa1.34□□□□□ -2.19
PTCD3-214ENST00000483925 LMTK2Q8IWU2 1503 aa1.34□□□□□ -2.2
PTCD3-214ENST00000483925 MADDQ8WXG6 1647 aa1.33□□□□□ -2.2
PTCD3-214ENST00000483925 LCE6AA0A183 80 aa1.33□□□□□ -2.2
PTCD3-214ENST00000483925 ATXN8Q156A1 80 aa1.33□□□□□ -2.2
PTCD3-214ENST00000483925 GNG13Q9P2W3 67 aa1.33□□□□□ -2.2
PTCD3-214ENST00000483925 HILPDAQ9Y5L2 63 aa1.33□□□□□ -2.2
PTCD3-214ENST00000483925 ARFGEF2Q9Y6D5 1785 aa1.33□□□□□ -2.2
PTCD3-214ENST00000483925 FXYD6-FXYD2A0A087WZ82 144 aa1.32□□□□□ -2.2
PTCD3-214ENST00000483925 CPSF4LA6NMK7 179 aaKnown RBP1.32□□□□□ -2.2
PTCD3-214ENST00000483925 I3L3M4 83 aa1.32□□□□□ -2.2
PTCD3-214ENST00000483925 K7EQZ3 153 aa1.32□□□□□ -2.2
PTCD3-214ENST00000483925 CDC42BPGQ6DT37 1551 aa1.32□□□□□ -2.2
PTCD3-214ENST00000483925 FCGBPQ9Y6R7 5405 aaPredicted RBP1.32□□□□□ -2.2
PTCD3-214ENST00000483925 ZNF831Q5JPB2 1677 aa1.32□□□□□ -2.2
PTCD3-214ENST00000483925 FBN3Q75N90 2809 aa1.31□□□□□ -2.2
PTCD3-214ENST00000483925 QSER1Q2KHR3 1735 aa1.31□□□□□ -2.2
PTCD3-214ENST00000483925 FAM208BQ5VWN6 2430 aa1.3□□□□□ -2.2
PTCD3-214ENST00000483925 ABCA9Q8IUA7 1624 aa1.3□□□□□ -2.2
PTCD3-214ENST00000483925 EIF2AK4Q9P2K8 1649 aaKnown RBP1.3□□□□□ -2.2
PTCD3-214ENST00000483925 CFAP43Q8NDM7 1665 aa1.3□□□□□ -2.2
PTCD3-214ENST00000483925 POLR1AO95602 1720 aaPredicted RBP1.3□□□□□ -2.2
PTCD3-214ENST00000483925 MUC6Q6W4X9 2439 aa1.29□□□□□ -2.2
PTCD3-214ENST00000483925 CICQ96RK0 1608 aaPredicted RBP1.29□□□□□ -2.2
PTCD3-214ENST00000483925 PLCH1Q4KWH8 1693 aa1.29□□□□□ -2.2
PTCD3-214ENST00000483925 COX6B1P14854 86 aa1.28□□□□□ -2.2
PTCD3-214ENST00000483925 UBR3Q6ZT12 1888 aa1.27□□□□□ -2.21
PTCD3-214ENST00000483925 ITSN1Q15811 1721 aa1.27□□□□□ -2.21
PTCD3-214ENST00000483925 CCDC180Q9P1Z9 1646 aa1.27□□□□□ -2.21
PTCD3-214ENST00000483925 BIVM-ERCC5R4GMW8 1640 aa1.27□□□□□ -2.21
PTCD3-214ENST00000483925 NDUFA4O00483 81 aa1.27□□□□□ -2.21
PTCD3-214ENST00000483925 PRB3Q04118 309 aaPredicted RBP1.27□□□□□ -2.21
PTCD3-214ENST00000483925 NHSQ6T4R5 1651 aa1.26□□□□□ -2.21
PTCD3-214ENST00000483925 TIAM1Q13009 1591 aa1.26□□□□□ -2.21
PTCD3-214ENST00000483925 HELZ2Q9BYK8 2649 aaKnown RBP1.26□□□□□ -2.21
PTCD3-214ENST00000483925 RALGAPBQ86X10 1494 aa1.26□□□□□ -2.21
PTCD3-214ENST00000483925 CCL22O00626 93 aa1.26□□□□□ -2.21
PTCD3-214ENST00000483925 Q5VSD8 79 aa1.26□□□□□ -2.21
PTCD3-214ENST00000483925 ANKRD17O75179 2603 aaKnown RBP1.26□□□□□ -2.21
PTCD3-214ENST00000483925 TIAM2Q8IVF5 1701 aa1.26□□□□□ -2.21
PTCD3-214ENST00000483925 ASH1LQ9NR48 2969 aaKnown RBP1.25□□□□□ -2.21
PTCD3-214ENST00000483925 C3orf79P0CE67 100 aa1.25□□□□□ -2.21
PTCD3-214ENST00000483925 SMIM5Q71RC9 77 aa1.25□□□□□ -2.21
PTCD3-214ENST00000483925 MRPL34Q9BQ48 92 aaKnown RBP1.25□□□□□ -2.21
PTCD3-214ENST00000483925 AHCTF1Q8WYP5 2266 aa1.25□□□□□ -2.21
PTCD3-214ENST00000483925 DIP2AQ14689 1571 aa1.25□□□□□ -2.21
PTCD3-214ENST00000483925 NWD1Q149M9 1564 aa1.25□□□□□ -2.21
PTCD3-214ENST00000483925 DOT1LQ8TEK3 1739 aa1.24□□□□□ -2.21
PTCD3-214ENST00000483925 BCORQ6W2J9 1755 aa1.24□□□□□ -2.21
PTCD3-214ENST00000483925 WIZO95785 1651 aa1.23□□□□□ -2.21
PTCD3-214ENST00000483925 PREX1Q8TCU6 1659 aa1.23□□□□□ -2.21
PTCD3-214ENST00000483925 SFTA3P0C7M3 94 aa1.23□□□□□ -2.21
PTCD3-214ENST00000483925 COL14A1Q05707 1796 aaKnown RBP1.22□□□□□ -2.21
PTCD3-214ENST00000483925 GOLGA4Q13439 2230 aaKnown RBP1.21□□□□□ -2.21
PTCD3-214ENST00000483925 RICTORQ6R327 1708 aa1.21□□□□□ -2.22
PTCD3-214ENST00000483925 PARP4Q9UKK3 1724 aaKnown RBP1.21□□□□□ -2.22
PTCD3-214ENST00000483925 ENHOQ6UWT2 76 aa1.21□□□□□ -2.22
PTCD3-214ENST00000483925 COX6B2Q6YFQ2 88 aa1.21□□□□□ -2.22
PTCD3-214ENST00000483925 UBL5Q9BZL1 73 aa1.21□□□□□ -2.22
PTCD3-214ENST00000483925 FMN2Q9NZ56 1722 aa1.2□□□□□ -2.22
PTCD3-214ENST00000483925 MRPL33O75394 65 aaKnown RBP1.18□□□□□ -2.22
PTCD3-214ENST00000483925 SPRR1AP35321 89 aa1.18□□□□□ -2.22
PTCD3-214ENST00000483925 LINC01549A6NIU2 74 aa1.17□□□□□ -2.22
PTCD3-214ENST00000483925 SPRR1BP22528 89 aa1.17□□□□□ -2.22
PTCD3-214ENST00000483925 EEA1Q15075 1411 aa1.16□□□□□ -2.22
PTCD3-214ENST00000483925 NESP48681 1621 aa1.16□□□□□ -2.22
PTCD3-214ENST00000483925 DEFB105AQ8NG35 78 aa1.16□□□□□ -2.22
PTCD3-214ENST00000483925 KCNQ1DNQ9H478 68 aa1.16□□□□□ -2.22
PTCD3-214ENST00000483925 ZNF462Q96JM2 2506 aa1.16□□□□□ -2.22
PTCD3-214ENST00000483925 TSC2P49815 1807 aa1.15□□□□□ -2.22
PTCD3-214ENST00000483925 ABCA6Q8N139 1617 aa1.15□□□□□ -2.23
PTCD3-214ENST00000483925 URB1O60287 2271 aaKnown RBP1.14□□□□□ -2.23
PTCD3-214ENST00000483925 TNRC6CQ9HCJ0 1690 aaKnown RBP1.14□□□□□ -2.23
PTCD3-214ENST00000483925 TENM1Q9UKZ4 2725 aa1.14□□□□□ -2.23
PTCD3-214ENST00000483925 THOC2Q8NI27 1593 aaKnown RBP1.14□□□□□ -2.23
PTCD3-214ENST00000483925 DEFB131BA0A096LNP1 70 aa1.14□□□□□ -2.23
PTCD3-214ENST00000483925 DEFB114Q30KQ6 69 aa1.14□□□□□ -2.23
PTCD3-214ENST00000483925 CDKN2A-AS1Q9UH64 79 aa1.14□□□□□ -2.23
PTCD3-214ENST00000483925 APLNQ9ULZ1 77 aa1.14□□□□□ -2.23
PTCD3-214ENST00000483925 ABCA10Q8WWZ4 1543 aa1.14□□□□□ -2.23
PTCD3-214ENST00000483925 NRAPQ86VF7 1730 aa1.13□□□□□ -2.23
PTCD3-214ENST00000483925 CACNA1EQ15878 2313 aa1.13□□□□□ -2.23
PTCD3-214ENST00000483925 PLXNC1O60486 1568 aa1.13□□□□□ -2.23
PTCD3-214ENST00000483925 PREX2Q70Z35 1606 aa1.12□□□□□ -2.23
PTCD3-214ENST00000483925 HMCN1Q96RW7 5635 aa1.12□□□□□ -2.23
PTCD3-214ENST00000483925 SPINK4O60575 86 aa1.12□□□□□ -2.23
PTCD3-214ENST00000483925 SPINK6Q6UWN8 80 aa1.12□□□□□ -2.23
PTCD3-214ENST00000483925 FXYD6Q9H0Q3 95 aa1.12□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms