RNA–Protein interactions for RNA: ENST00000480943.5

VPS50-215, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 801 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-215ENST00000480943 SRSF9Q13242 221 aaKnown RBP eCLIP3.73□□□□□ -1.81
VPS50-215ENST00000480943 FAM19A3Q7Z5A8 133 aa3.73□□□□□ -1.81
VPS50-215ENST00000480943 LINC01561Q8N1V8 128 aa3.73□□□□□ -1.81
VPS50-215ENST00000480943 SCGB3A1Q96QR1 104 aa3.73□□□□□ -1.81
VPS50-215ENST00000480943 ALKBH7Q9BT30 221 aaPredicted RBP3.73□□□□□ -1.81
VPS50-215ENST00000480943 GNB1LQ9BYB4 327 aa3.73□□□□□ -1.81
VPS50-215ENST00000480943 GEMIN7Q9H840 131 aaKnown RBP3.73□□□□□ -1.81
VPS50-215ENST00000480943 RPS10P5Q9NQ39 176 aa3.73□□□□□ -1.81
VPS50-215ENST00000480943 CDKN2A-AS1Q9UH64 79 aa3.73□□□□□ -1.81
VPS50-215ENST00000480943 IGLV9-49A0A0B4J1Y8 123 aa3.72□□□□□ -1.81
VPS50-215ENST00000480943 CKS1BP61024 79 aa3.72□□□□□ -1.81
VPS50-215ENST00000480943 HERVK_113P63121 156 aa3.72□□□□□ -1.81
VPS50-215ENST00000480943 UBE2BP63146 152 aa3.72□□□□□ -1.81
VPS50-215ENST00000480943 FABP9Q0Z7S8 132 aa3.72□□□□□ -1.81
VPS50-215ENST00000480943 COX19Q49B96 90 aa3.72□□□□□ -1.81
VPS50-215ENST00000480943 C6orf226Q5I0X4 101 aa3.72□□□□□ -1.81
VPS50-215ENST00000480943 C9orf129Q5T035 196 aaKnown RBP3.72□□□□□ -1.81
VPS50-215ENST00000480943 FA2HQ7L5A8 372 aa3.72□□□□□ -1.81
VPS50-215ENST00000480943 ERASQ7Z444 233 aa3.72□□□□□ -1.81
VPS50-215ENST00000480943 KRTAP11-1Q8IUC1 163 aa3.72□□□□□ -1.81
VPS50-215ENST00000480943 Q8IZM0 81 aa3.72□□□□□ -1.81
VPS50-215ENST00000480943 LINC00469Q8N7U9 141 aa3.72□□□□□ -1.81
VPS50-215ENST00000480943 SMCO4Q9NRQ5 59 aa3.72□□□□□ -1.81
VPS50-215ENST00000480943 IGLV7-43P04211 117 aa3.71□□□□□ -1.82
VPS50-215ENST00000480943 DSCR10P59022 87 aa3.71□□□□□ -1.82
VPS50-215ENST00000480943 SNRPEP62304 92 aaKnown RBP3.71□□□□□ -1.82
VPS50-215ENST00000480943 RHEBQ15382 184 aa3.71□□□□□ -1.82
VPS50-215ENST00000480943 C10orf91Q5T1B1 145 aa3.71□□□□□ -1.82
VPS50-215ENST00000480943 CARHSP1Q9Y2V2 147 aaKnown RBP3.71□□□□□ -1.82
VPS50-215ENST00000480943 LRP2P98164 4655 aa3.71□□□□□ -1.82
VPS50-215ENST00000480943 TINCRA0A1B0GVN0 87 aa3.7□□□□□ -1.82
VPS50-215ENST00000480943 LINC01546A6NGU7 62 aa3.7□□□□□ -1.82
VPS50-215ENST00000480943 LINC01549A6NIU2 74 aa3.7□□□□□ -1.82
VPS50-215ENST00000480943 F8VRH5 84 aa3.7□□□□□ -1.82
VPS50-215ENST00000480943 SPINK8P0C7L1 97 aa3.7□□□□□ -1.82
VPS50-215ENST00000480943 CXCL5P42830 114 aa3.7□□□□□ -1.82
VPS50-215ENST00000480943 PMVKQ15126 192 aa3.7□□□□□ -1.82
VPS50-215ENST00000480943 KRTAP5-5Q701N2 237 aaPredicted RBP3.7□□□□□ -1.82
VPS50-215ENST00000480943 COX7B2Q8TF08 81 aa3.7□□□□□ -1.82
VPS50-215ENST00000480943 DIRC1Q969H9 104 aa3.7□□□□□ -1.82
VPS50-215ENST00000480943 XAGE1AQ9HD64 81 aa3.7□□□□□ -1.82
VPS50-215ENST00000480943 TRAPPC1Q9Y5R8 145 aa3.7□□□□□ -1.82
VPS50-215ENST00000480943 IGLV7-46A0A075B6I9 117 aa3.69□□□□□ -1.82
VPS50-215ENST00000480943 H0Y9J4 135 aa3.69□□□□□ -1.82
VPS50-215ENST00000480943 APOC3P02656 99 aa3.69□□□□□ -1.82
VPS50-215ENST00000480943 NDUFA6P56556 154 aa3.69□□□□□ -1.82
VPS50-215ENST00000480943 PDZD11Q5EBL8 140 aa3.69□□□□□ -1.82
VPS50-215ENST00000480943 C18orf32Q8TCD1 76 aa3.69□□□□□ -1.82
VPS50-215ENST00000480943 CST9LQ9H4G1 147 aa3.69□□□□□ -1.82
VPS50-215ENST00000480943 A0A096LNJ9 63 aa3.68□□□□□ -1.82
VPS50-215ENST00000480943 SNAPINO95295 136 aa3.68□□□□□ -1.82
VPS50-215ENST00000480943 HBDP02042 147 aa3.68□□□□□ -1.82
VPS50-215ENST00000480943 PMCHL1Q16048 86 aa3.68□□□□□ -1.82
VPS50-215ENST00000480943 NDUFA5Q16718 116 aa3.68□□□□□ -1.82
VPS50-215ENST00000480943 C22orf24Q9Y442 160 aa3.68□□□□□ -1.82
VPS50-215ENST00000480943 H3BRM9 83 aa3.67□□□□□ -1.82
VPS50-215ENST00000480943 LINC00614P0C842 121 aa3.67□□□□□ -1.82
VPS50-215ENST00000480943 IGLC3P0DOY3 106 aa3.67□□□□□ -1.82
VPS50-215ENST00000480943 ZNF22P17026 224 aaPredicted RBP3.67□□□□□ -1.82
VPS50-215ENST00000480943 RAB5BP61020 215 aa3.67□□□□□ -1.82
VPS50-215ENST00000480943 LCE1CQ5T751 118 aa3.67□□□□□ -1.82
VPS50-215ENST00000480943 LCE1BQ5T7P3 118 aa3.67□□□□□ -1.82
VPS50-215ENST00000480943 NUPR1O60356 82 aa3.66□□□□□ -1.82
VPS50-215ENST00000480943 LBHQ53QV2 105 aaPredicted RBP3.66□□□□□ -1.82
VPS50-215ENST00000480943 MRPL55Q7Z7F7 128 aaKnown RBP3.66□□□□□ -1.82
VPS50-215ENST00000480943 SVBPQ8N300 66 aa3.66□□□□□ -1.82
VPS50-215ENST00000480943 IGLV1-50A0A075B6I6 118 aa3.65□□□□□ -1.83
VPS50-215ENST00000480943 C11orf86A6NJI1 115 aa3.65□□□□□ -1.83
VPS50-215ENST00000480943 RPL37AP8A6NKH3 93 aa3.65□□□□□ -1.83
VPS50-215ENST00000480943 ATP5LO75964 103 aa3.65□□□□□ -1.83
VPS50-215ENST00000480943 KRTAP1-4P0C5Y4 121 aa3.65□□□□□ -1.83
VPS50-215ENST00000480943 PFN2P35080 140 aa3.65□□□□□ -1.83
VPS50-215ENST00000480943 BAGE3Q86Y29 109 aa3.65□□□□□ -1.83
VPS50-215ENST00000480943 NKAPP1Q8N9T2 125 aa3.65□□□□□ -1.83
VPS50-215ENST00000480943 ZNF625Q96I27 306 aaPredicted RBP3.65□□□□□ -1.83
VPS50-215ENST00000480943 LINC00167Q96N53 147 aa3.65□□□□□ -1.83
VPS50-215ENST00000480943 TP73-AS1Q9UF72 201 aa3.65□□□□□ -1.83
VPS50-215ENST00000480943 ZNF861PO60384 105 aa3.64□□□□□ -1.83
VPS50-215ENST00000480943 SCO1O75880 301 aa3.64□□□□□ -1.83
VPS50-215ENST00000480943 TMEM170BQ5T4T1 132 aa3.64□□□□□ -1.83
VPS50-215ENST00000480943 CBLN2Q8IUK8 224 aa3.64□□□□□ -1.83
VPS50-215ENST00000480943 ERG28Q9UKR5 140 aa3.64□□□□□ -1.83
VPS50-215ENST00000480943 IGKV2-28A0A075B6P5 120 aa3.63□□□□□ -1.83
VPS50-215ENST00000480943 BCE1O60756 84 aa3.63□□□□□ -1.83
VPS50-215ENST00000480943 IGKV2D-28P01615 120 aa3.63□□□□□ -1.83
VPS50-215ENST00000480943 RPL28P46779 137 aaKnown RBP3.63□□□□□ -1.83
VPS50-215ENST00000480943 YPEL4Q96NS1 127 aa3.63□□□□□ -1.83
VPS50-215ENST00000480943 CHTOPQ9Y3Y2 248 aaKnown RBP3.63□□□□□ -1.83
VPS50-215ENST00000480943 LPAP08519 4548 aa3.63□□□□□ -1.83
VPS50-215ENST00000480943 A4D1N5 150 aa3.62□□□□□ -1.83
VPS50-215ENST00000480943 HSBP1O75506 76 aa3.62□□□□□ -1.83
VPS50-215ENST00000480943 VPREB1P12018 145 aa3.62□□□□□ -1.83
VPS50-215ENST00000480943 RPL13AP40429 203 aaKnown RBP3.62□□□□□ -1.83
VPS50-215ENST00000480943 UBE2AP49459 152 aa3.62□□□□□ -1.83
VPS50-215ENST00000480943 IFI27L1Q96BM0 104 aa3.62□□□□□ -1.83
VPS50-215ENST00000480943 CHCHD1Q96BP2 118 aaKnown RBP3.62□□□□□ -1.83
VPS50-215ENST00000480943 SND1-IT1Q9HBX3 110 aa3.62□□□□□ -1.83
VPS50-215ENST00000480943 TRAV12-1A0A0B4J245 112 aa3.61□□□□□ -1.83
VPS50-215ENST00000480943 A0A0U1RRA0 63 aa3.61□□□□□ -1.83
VPS50-215ENST00000480943 TMEM223A0PJW6 202 aa3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms