RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-208ENST00000474426 LYZP61626 148 aa2.12□□□□□ -2.07
UBR3-208ENST00000474426 LAMA5O15230 3695 aa2.12□□□□□ -2.07
UBR3-208ENST00000474426 TRGV2A0A075B6R0 118 aa2.12□□□□□ -2.07
UBR3-208ENST00000474426 DEFB114Q30KQ6 69 aa2.12□□□□□ -2.07
UBR3-208ENST00000474426 BOD1L1Q8NFC6 3051 aa2.12□□□□□ -2.07
UBR3-208ENST00000474426 SMIM11BQ8TCY0 68 aa2.12□□□□□ -2.07
UBR3-208ENST00000474426 CRYBG3Q68DQ2 2970 aa2.11□□□□□ -2.07
UBR3-208ENST00000474426 ZFHX4Q86UP3 3567 aa2.11□□□□□ -2.07
UBR3-208ENST00000474426 ALMS1Q8TCU4 4167 aa2.11□□□□□ -2.07
UBR3-208ENST00000474426 ETDCA0A1B0GVM5 59 aa2.11□□□□□ -2.07
UBR3-208ENST00000474426 LCE2BO14633 110 aa2.11□□□□□ -2.07
UBR3-208ENST00000474426 TRANK1O15050 2925 aa2.11□□□□□ -2.07
UBR3-208ENST00000474426 XP32Q5T750 250 aa2.11□□□□□ -2.07
UBR3-208ENST00000474426 Q8N377 158 aa2.1□□□□□ -2.07
UBR3-208ENST00000474426 IGKV2-28A0A075B6P5 120 aa2.1□□□□□ -2.07
UBR3-208ENST00000474426 NDUFA1O15239 70 aa2.1□□□□□ -2.07
UBR3-208ENST00000474426 IGKV2D-28P01615 120 aa2.1□□□□□ -2.07
UBR3-208ENST00000474426 MGPP08493 103 aa2.1□□□□□ -2.07
UBR3-208ENST00000474426 PDE6HQ13956 83 aa2.1□□□□□ -2.07
UBR3-208ENST00000474426 ZNRD1Q9P1U0 126 aa2.1□□□□□ -2.07
UBR3-208ENST00000474426 UQCR11O14957 56 aa2.1□□□□□ -2.07
UBR3-208ENST00000474426 A0A1B0GU33 70 aa2.09□□□□□ -2.07
UBR3-208ENST00000474426 RPL39P62891 51 aaKnown RBP2.09□□□□□ -2.07
UBR3-208ENST00000474426 MRGPRG-AS1Q2M3A8 158 aa2.09□□□□□ -2.07
UBR3-208ENST00000474426 USF3Q68DE3 2245 aa2.09□□□□□ -2.08
UBR3-208ENST00000474426 URB1O60287 2271 aaKnown RBP2.09□□□□□ -2.08
UBR3-208ENST00000474426 NBEAQ8NFP9 2946 aa2.09□□□□□ -2.08
UBR3-208ENST00000474426 Q96NJ1 140 aa2.08□□□□□ -2.08
UBR3-208ENST00000474426 RNF5Q99942 180 aa2.08□□□□□ -2.08
UBR3-208ENST00000474426 NBDYA0A0U1RRE5 68 aa2.08□□□□□ -2.08
UBR3-208ENST00000474426 LINC00315P59091 139 aa2.08□□□□□ -2.08
UBR3-208ENST00000474426 RPL39LQ96EH5 51 aaKnown RBP2.08□□□□□ -2.08
UBR3-208ENST00000474426 FRYQ5TBA9 3013 aa2.08□□□□□ -2.08
UBR3-208ENST00000474426 A0A0J9YWU9 116 aa2.07□□□□□ -2.08
UBR3-208ENST00000474426 LINC00158P58513 81 aa2.07□□□□□ -2.08
UBR3-208ENST00000474426 SPINT4Q6UDR6 99 aa2.07□□□□□ -2.08
UBR3-208ENST00000474426 C16orf74Q96GX8 76 aa2.07□□□□□ -2.08
UBR3-208ENST00000474426 COL27A1Q8IZC6 1860 aaPredicted RBP2.07□□□□□ -2.08
UBR3-208ENST00000474426 A0A096LNT2 108 aa2.07□□□□□ -2.08
UBR3-208ENST00000474426 POLR2KP53803 58 aaKnown RBP2.07□□□□□ -2.08
UBR3-208ENST00000474426 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP2.07□□□□□ -2.08
UBR3-208ENST00000474426 TECTAO75443 2155 aa2.07□□□□□ -2.08
UBR3-208ENST00000474426 PLA2G2AP14555 144 aa2.07□□□□□ -2.08
UBR3-208ENST00000474426 COX7BP24311 80 aa2.07□□□□□ -2.08
UBR3-208ENST00000474426 ICE1Q9Y2F5 2266 aa2.06□□□□□ -2.08
UBR3-208ENST00000474426 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.06□□□□□ -2.08
UBR3-208ENST00000474426 PATE1Q8WXA2 126 aa2.06□□□□□ -2.08
UBR3-208ENST00000474426 KRTAP9-2Q9BYQ4 174 aa2.06□□□□□ -2.08
UBR3-208ENST00000474426 ZDBF2Q9HCK1 2354 aa2.06□□□□□ -2.08
UBR3-208ENST00000474426 KMT2BQ9UMN6 2715 aaPredicted RBP2.06□□□□□ -2.08
UBR3-208ENST00000474426 DOPEY2Q9Y3R5 2298 aa2.06□□□□□ -2.08
UBR3-208ENST00000474426 ASH1LQ9NR48 2969 aaKnown RBP2.05□□□□□ -2.08
UBR3-208ENST00000474426 PIEZO2Q9H5I5 2752 aa2.05□□□□□ -2.08
UBR3-208ENST00000474426 A0A1W2PPR1 153 aa2.05□□□□□ -2.08
UBR3-208ENST00000474426 LEAP2Q969E1 77 aa2.05□□□□□ -2.08
UBR3-208ENST00000474426 COL12A1Q99715 3063 aa2.05□□□□□ -2.08
UBR3-208ENST00000474426 PRRC2CQ9Y520 2896 aaKnown RBP2.05□□□□□ -2.08
UBR3-208ENST00000474426 FBN1P35555 2871 aaKnown RBP2.05□□□□□ -2.08
UBR3-208ENST00000474426 LINC00304Q8N9R0 145 aa2.05□□□□□ -2.08
UBR3-208ENST00000474426 RTTNQ86VV8 2226 aa2.04□□□□□ -2.08
UBR3-208ENST00000474426 TRGV1A0A0A0MS02 117 aa2.04□□□□□ -2.08
UBR3-208ENST00000474426 MYO15AQ9UKN7 3530 aa2.03□□□□□ -2.08
UBR3-208ENST00000474426 KRTAP4-8A0A0G2JLE6 195 aa2.03□□□□□ -2.08
UBR3-208ENST00000474426 HRES1P13985 223 aa2.03□□□□□ -2.08
UBR3-208ENST00000474426 SPINK2P20155 84 aa2.03□□□□□ -2.08
UBR3-208ENST00000474426 ASCC3Q8N3C0 2202 aaKnown RBP2.03□□□□□ -2.08
UBR3-208ENST00000474426 A0A1B0GU69 56 aa2.03□□□□□ -2.08
UBR3-208ENST00000474426 PRCDQ00LT1 54 aa2.03□□□□□ -2.08
UBR3-208ENST00000474426 IGF2RP11717 2491 aa2.03□□□□□ -2.08
UBR3-208ENST00000474426 IGKV2-40A0A087WW87 121 aaPredicted RBP2.03□□□□□ -2.08
UBR3-208ENST00000474426 IGKV2D-40P01614 121 aaPredicted RBP2.03□□□□□ -2.08
UBR3-208ENST00000474426 DCHS2Q6V1P9 2916 aa2.03□□□□□ -2.08
UBR3-208ENST00000474426 KNL1Q8NG31 2342 aa2.02□□□□□ -2.09
UBR3-208ENST00000474426 FAM168BA1KXE4 195 aa2.02□□□□□ -2.09
UBR3-208ENST00000474426 IGLV7-43P04211 117 aa2.02□□□□□ -2.09
UBR3-208ENST00000474426 KRTAP4-12Q9BQ66 201 aa2.02□□□□□ -2.09
UBR3-208ENST00000474426 COL6A6A6NMZ7 2263 aa2.02□□□□□ -2.09
UBR3-208ENST00000474426 CNTRLQ7Z7A1 2325 aa2.02□□□□□ -2.09
UBR3-208ENST00000474426 KRTAP9-6A0A140TA67 174 aa2.02□□□□□ -2.09
UBR3-208ENST00000474426 SMG1Q96Q15 3661 aaKnown RBP2.02□□□□□ -2.09
UBR3-208ENST00000474426 DEFB116Q30KQ4 102 aa2.02□□□□□ -2.09
UBR3-208ENST00000474426 Q6ZQY7 126 aa2.02□□□□□ -2.09
UBR3-208ENST00000474426 KRTAP4-7Q9BYR0 210 aa2.02□□□□□ -2.09
UBR3-208ENST00000474426 CDKN2A-AS1Q9UH64 79 aa2.02□□□□□ -2.09
UBR3-208ENST00000474426 BRWD1Q9NSI6 2320 aa2.01□□□□□ -2.09
UBR3-208ENST00000474426 CELSR1Q9NYQ6 3014 aa2.01□□□□□ -2.09
UBR3-208ENST00000474426 I3L2K1 104 aa2.01□□□□□ -2.09
UBR3-208ENST00000474426 KALRNO60229 2985 aa2.01□□□□□ -2.09
UBR3-208ENST00000474426 TRIOBPQ9H2D6 2365 aa2.01□□□□□ -2.09
UBR3-208ENST00000474426 IGKV2D-24A0A075B6R9 120 aa2.01□□□□□ -2.09
UBR3-208ENST00000474426 PRO2289Q9P1D8 64 aa2.01□□□□□ -2.09
UBR3-208ENST00000474426 NAV3Q8IVL0 2385 aa2.01□□□□□ -2.09
UBR3-208ENST00000474426 LINC00575Q6W349 94 aa2□□□□□ -2.09
UBR3-208ENST00000474426 DEFB104AQ8WTQ1 72 aa2□□□□□ -2.09
UBR3-208ENST00000474426 ATRXP46100 2492 aa2□□□□□ -2.09
UBR3-208ENST00000474426 A0A1W2PNN7 141 aa2□□□□□ -2.09
UBR3-208ENST00000474426 C5orf56Q8N8D9 126 aa2□□□□□ -2.09
UBR3-208ENST00000474426 TYMSOSQ8TAI1 123 aa2□□□□□ -2.09
UBR3-208ENST00000474426 DSCR10P59022 87 aa1.99□□□□□ -2.09
UBR3-208ENST00000474426 KRTAP11-1Q8IUC1 163 aa1.99□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms