RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 COL5A1P20908 1838 aaPredicted RBP2.49□□□□□ -2.01
CCDC88A-210ENST00000468534 NDUFA4O00483 81 aa2.48□□□□□ -2.01
CCDC88A-210ENST00000468534 ACYP2P14621 99 aa2.48□□□□□ -2.01
CCDC88A-210ENST00000468534 COA5Q86WW8 74 aa2.48□□□□□ -2.01
CCDC88A-210ENST00000468534 QSER1Q2KHR3 1735 aa2.48□□□□□ -2.01
CCDC88A-210ENST00000468534 ARL14EPLP0DKL9 152 aa2.47□□□□□ -2.01
CCDC88A-210ENST00000468534 DEFB114Q30KQ6 69 aa2.47□□□□□ -2.01
CCDC88A-210ENST00000468534 KRTAP13-2Q52LG2 175 aa2.47□□□□□ -2.01
CCDC88A-210ENST00000468534 SDK1Q7Z5N4 2213 aa2.46□□□□□ -2.01
CCDC88A-210ENST00000468534 SAMD9LQ8IVG5 1584 aa2.46□□□□□ -2.02
CCDC88A-210ENST00000468534 A0A1B0GU69 56 aa2.46□□□□□ -2.02
CCDC88A-210ENST00000468534 DOCK10Q96BY6 2186 aa2.46□□□□□ -2.02
CCDC88A-210ENST00000468534 ZFHX2Q9C0A1 2572 aaPredicted RBP2.46□□□□□ -2.02
CCDC88A-210ENST00000468534 DDX60LQ5H9U9 1706 aaKnown RBP2.45□□□□□ -2.02
CCDC88A-210ENST00000468534 SEC16AO15027 2179 aa2.45□□□□□ -2.02
CCDC88A-210ENST00000468534 SPINK4O60575 86 aa2.45□□□□□ -2.02
CCDC88A-210ENST00000468534 COX7BP24311 80 aa2.45□□□□□ -2.02
CCDC88A-210ENST00000468534 ZFHX3Q15911 3703 aa2.45□□□□□ -2.02
CCDC88A-210ENST00000468534 KRTAP10-10P60014 251 aa2.43□□□□□ -2.02
CCDC88A-210ENST00000468534 Q6ZRN7 208 aaPredicted RBP2.43□□□□□ -2.02
CCDC88A-210ENST00000468534 CCL19Q99731 98 aa2.43□□□□□ -2.02
CCDC88A-210ENST00000468534 KCNQ1DNQ9H478 68 aa2.43□□□□□ -2.02
CCDC88A-210ENST00000468534 NCOA6Q14686 2063 aaPredicted RBP2.43□□□□□ -2.02
CCDC88A-210ENST00000468534 IGKV2-28A0A075B6P5 120 aa2.42□□□□□ -2.02
CCDC88A-210ENST00000468534 IGKV2D-28P01615 120 aa2.42□□□□□ -2.02
CCDC88A-210ENST00000468534 KRTAP5-7Q6L8G8 165 aa2.42□□□□□ -2.02
CCDC88A-210ENST00000468534 Q6ZQY7 126 aa2.42□□□□□ -2.02
CCDC88A-210ENST00000468534 TIMM8BQ9Y5J9 83 aaPredicted RBP2.42□□□□□ -2.02
CCDC88A-210ENST00000468534 BRWD1Q9NSI6 2320 aa2.41□□□□□ -2.02
CCDC88A-210ENST00000468534 ETDCA0A1B0GVM5 59 aa2.41□□□□□ -2.02
CCDC88A-210ENST00000468534 NCR3O14931 201 aa2.41□□□□□ -2.02
CCDC88A-210ENST00000468534 PRR9Q5T870 116 aa2.41□□□□□ -2.02
CCDC88A-210ENST00000468534 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa2.41□□□□□ -2.02
CCDC88A-210ENST00000468534 DDX60Q8IY21 1712 aaKnown RBP2.41□□□□□ -2.02
CCDC88A-210ENST00000468534 E9PCH4 1651 aa2.41□□□□□ -2.02
CCDC88A-210ENST00000468534 G3V318 75 aa2.4□□□□□ -2.03
CCDC88A-210ENST00000468534 LRRC37A2A6NM11 1700 aa2.39□□□□□ -2.03
CCDC88A-210ENST00000468534 FXYD6P3P58550 94 aa2.39□□□□□ -2.03
CCDC88A-210ENST00000468534 HAMPP81172 84 aa2.39□□□□□ -2.03
CCDC88A-210ENST00000468534 Q6ZRX8 168 aa2.39□□□□□ -2.03
CCDC88A-210ENST00000468534 DUOX1Q9NRD9 1551 aa2.39□□□□□ -2.03
CCDC88A-210ENST00000468534 A0A096LNT2 108 aa2.38□□□□□ -2.03
CCDC88A-210ENST00000468534 IGKV2-24A0A0C4DH68 120 aa2.38□□□□□ -2.03
CCDC88A-210ENST00000468534 H0YGX0 51 aa2.38□□□□□ -2.03
CCDC88A-210ENST00000468534 C10orf99Q6UWK7 81 aa2.38□□□□□ -2.03
CCDC88A-210ENST00000468534 PLAC4Q8WY50 150 aa2.38□□□□□ -2.03
CCDC88A-210ENST00000468534 C4AP0C0L4 1744 aa2.37□□□□□ -2.03
CCDC88A-210ENST00000468534 GVQW2A0A096LPI5 108 aaPredicted RBP2.37□□□□□ -2.03
CCDC88A-210ENST00000468534 CPSF4LA6NMK7 179 aaKnown RBP2.37□□□□□ -2.03
CCDC88A-210ENST00000468534 NDUFA3O95167 84 aa2.37□□□□□ -2.03
CCDC88A-210ENST00000468534 SMIM11BQ8TCY0 68 aa2.37□□□□□ -2.03
CCDC88A-210ENST00000468534 KMT2BQ9UMN6 2715 aaPredicted RBP2.36□□□□□ -2.03
CCDC88A-210ENST00000468534 SSBP3-AS1Q7Z2R9 100 aa2.36□□□□□ -2.03
CCDC88A-210ENST00000468534 MUC19Q7Z5P9 8384 aa2.36□□□□□ -2.03
CCDC88A-210ENST00000468534 ALPK2Q86TB3 2170 aa2.36□□□□□ -2.03
CCDC88A-210ENST00000468534 TOGARAM1Q9Y4F4 1720 aa2.35□□□□□ -2.03
CCDC88A-210ENST00000468534 LY6G6CO95867 125 aa2.35□□□□□ -2.03
CCDC88A-210ENST00000468534 GCC2Q8IWJ2 1684 aa2.34□□□□□ -2.03
CCDC88A-210ENST00000468534 PIN1P1O15428 100 aa2.33□□□□□ -2.04
CCDC88A-210ENST00000468534 RPL38P63173 70 aaKnown RBP2.33□□□□□ -2.04
CCDC88A-210ENST00000468534 SSC5DA1L4H1 1573 aa2.32□□□□□ -2.04
CCDC88A-210ENST00000468534 A0A0G2JMZ2 1700 aa2.32□□□□□ -2.04
CCDC88A-210ENST00000468534 DEFB131BA0A096LNP1 70 aa2.32□□□□□ -2.04
CCDC88A-210ENST00000468534 CRIP1P50238 77 aa2.32□□□□□ -2.04
CCDC88A-210ENST00000468534 IGFL1Q6UW32 110 aa2.32□□□□□ -2.04
CCDC88A-210ENST00000468534 TMEM167BQ9NRX6 74 aa2.32□□□□□ -2.04
CCDC88A-210ENST00000468534 MRPL33O75394 65 aaKnown RBP2.31□□□□□ -2.04
CCDC88A-210ENST00000468534 SHANK1Q9Y566 2161 aa2.3□□□□□ -2.04
CCDC88A-210ENST00000468534 ANGP03950 147 aaKnown RBP2.29□□□□□ -2.04
CCDC88A-210ENST00000468534 RTTNQ86VV8 2226 aa2.29□□□□□ -2.04
CCDC88A-210ENST00000468534 LRRC37AA6NMS7 1700 aa2.28□□□□□ -2.04
CCDC88A-210ENST00000468534 FN1P02751 2386 aaKnown RBP2.28□□□□□ -2.04
CCDC88A-210ENST00000468534 FREM1Q5H8C1 2179 aa2.28□□□□□ -2.04
CCDC88A-210ENST00000468534 GPR179Q6PRD1 2367 aa2.28□□□□□ -2.05
CCDC88A-210ENST00000468534 TRIOBPQ9H2D6 2365 aa2.28□□□□□ -2.05
CCDC88A-210ENST00000468534 LMO7Q8WWI1 1683 aa2.28□□□□□ -2.05
CCDC88A-210ENST00000468534 SPTY2D1-AS1A0A0U1RR47 76 aa2.27□□□□□ -2.05
CCDC88A-210ENST00000468534 F5P12259 2224 aa2.27□□□□□ -2.05
CCDC88A-210ENST00000468534 MED13LQ71F56 2210 aa2.27□□□□□ -2.05
CCDC88A-210ENST00000468534 C4BP0C0L5 1744 aa2.27□□□□□ -2.05
CCDC88A-210ENST00000468534 PLXNB2O15031 1838 aa2.26□□□□□ -2.05
CCDC88A-210ENST00000468534 TNCP24821 2201 aa2.26□□□□□ -2.05
CCDC88A-210ENST00000468534 PRB1P04280 392 aa2.26□□□□□ -2.05
CCDC88A-210ENST00000468534 LINC00158P58513 81 aa2.26□□□□□ -2.05
CCDC88A-210ENST00000468534 SPINK13Q1W4C9 94 aa2.26□□□□□ -2.05
CCDC88A-210ENST00000468534 UNQ6190/PRO20217Q6UXQ8 127 aa2.26□□□□□ -2.05
CCDC88A-210ENST00000468534 RPL37P61927 97 aaKnown RBP2.24□□□□□ -2.05
CCDC88A-210ENST00000468534 CDKN2A-AS1Q9UH64 79 aa2.24□□□□□ -2.05
CCDC88A-210ENST00000468534 SPRR5A0A1B0GTR4 108 aa2.23□□□□□ -2.05
CCDC88A-210ENST00000468534 KRTAP13-4Q3LI77 160 aa2.23□□□□□ -2.05
CCDC88A-210ENST00000468534 LINC00575Q6W349 94 aa2.23□□□□□ -2.05
CCDC88A-210ENST00000468534 Q8IZM0 81 aa2.23□□□□□ -2.05
CCDC88A-210ENST00000468534 LINC00308Q8TCZ7 52 aa2.22□□□□□ -2.05
CCDC88A-210ENST00000468534 CACNA1CQ13936 2221 aa2.22□□□□□ -2.05
CCDC88A-210ENST00000468534 TFF3Q07654 80 aa2.2□□□□□ -2.06
CCDC88A-210ENST00000468534 UBE2DNLQ8IWF7 75 aa2.2□□□□□ -2.06
CCDC88A-210ENST00000468534 SMIM2Q9BVW6 85 aa2.2□□□□□ -2.06
CCDC88A-210ENST00000468534 PRO3102Q9H379 93 aa2.2□□□□□ -2.06
CCDC88A-210ENST00000468534 ABCA1O95477 2261 aa2.19□□□□□ -2.06
CCDC88A-210ENST00000468534 LOC730098B7Z3J9 87 aa2.19□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 111.2 ms