RNA–Protein interactions for RNA: ENST00000427110.6

PTPRC-208, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 264 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-208ENST00000427110 RPL39LQ96EH5 51 aaKnown RBP0.96□□□□□ -2.26
PTPRC-208ENST00000427110 SCGB3A1Q96QR1 104 aa0.96□□□□□ -2.26
PTPRC-208ENST00000427110 AMELXQ99217 191 aa0.96□□□□□ -2.26
PTPRC-208ENST00000427110 TIMM21Q9BVV7 248 aa0.96□□□□□ -2.26
PTPRC-208ENST00000427110 CST9LQ9H4G1 147 aa0.96□□□□□ -2.26
PTPRC-208ENST00000427110 CYSLTR1Q9Y271 337 aa0.96□□□□□ -2.26
PTPRC-208ENST00000427110 TIMM8BQ9Y5J9 83 aaPredicted RBP0.96□□□□□ -2.26
PTPRC-208ENST00000427110 MYO9AB2RTY4 2548 aa0.96□□□□□ -2.26
PTPRC-208ENST00000427110 KMT2BQ9UMN6 2715 aaPredicted RBP0.96□□□□□ -2.26
PTPRC-208ENST00000427110 FBN2P35556 2912 aa0.96□□□□□ -2.26
PTPRC-208ENST00000427110 PTPN13Q12923 2485 aa0.96□□□□□ -2.26
PTPRC-208ENST00000427110 ITPR3Q14573 2671 aa0.96□□□□□ -2.26
PTPRC-208ENST00000427110 FAM208BQ5VWN6 2430 aa0.96□□□□□ -2.26
PTPRC-208ENST00000427110 CREBBPQ92793 2442 aa0.96□□□□□ -2.26
PTPRC-208ENST00000427110 MAP1AP78559 2803 aaPredicted RBP0.96□□□□□ -2.26
PTPRC-208ENST00000427110 LRRK2Q5S007 2527 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 CSMD2Q7Z408 3487 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 NBPF19A0A087WUL8 3843 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 NAV2Q8IVL1 2488 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 PDZD2O15018 2839 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 TRBV20-1A0A075B6N2 111 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 A0A0J9YY99 117 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 TRBV10-1A0A0K0K1A3 114 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 TINCRA0A1B0GVN0 87 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 ZNF815PA8K554 130 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 H3BUT2 72 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 I3L3M4 83 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 J3QQQ9 107 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 M0R2P5 195 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 IGHV3-30P01768 117 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 ATP5G1P05496 136 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 MGPP08493 103 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 IGHV3-30-5P0DP03 117 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 FABP2P12104 132 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 DEFB131AP59861 70 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 UBE2D3P61077 147 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 UBE2D2P62837 147 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 RPL39P62891 51 aaKnown RBP0.95□□□□□ -2.26
PTPRC-208ENST00000427110 MRPS36P82909 103 aaKnown RBP0.95□□□□□ -2.26
PTPRC-208ENST00000427110 SS18Q15532 418 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 SPINK13Q1W4C9 94 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 RRN3P1Q2M238 152 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 DEFB114Q30KQ6 69 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 PCOTHQ58A44 107 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 LYRM7Q5U5X0 104 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 CFAP126Q5VTH2 177 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 SBSPONQ8IVN8 264 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 C10orf126Q8N4M7 172 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 ATP6V0E2Q8NHE4 81 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 C4orf3Q8WVX3 66 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 RAB37Q96AX2 223 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 PLEKHB2Q96CS7 222 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 PRADC1Q9BSG0 188 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 TTTY13Q9BZ97 58 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 SPANXA1Q9NS26 97 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 NHP2Q9NX24 153 aaKnown RBP0.95□□□□□ -2.26
PTPRC-208ENST00000427110 CRCT1Q9UGL9 99 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 TP53TG1Q9Y2A0 90 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 SPCS1Q9Y6A9 102 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 CHD6Q8TD26 2715 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 CENPEQ02224 2701 aa0.95□□□□□ -2.26
PTPRC-208ENST00000427110 ZNF462Q96JM2 2506 aa0.94□□□□□ -2.26
PTPRC-208ENST00000427110 NF1P21359 2839 aa0.94□□□□□ -2.26
PTPRC-208ENST00000427110 FLNAP21333 2647 aaKnown RBP0.94□□□□□ -2.26
PTPRC-208ENST00000427110 POLQO75417 2590 aa0.94□□□□□ -2.26
PTPRC-208ENST00000427110 ABCA12Q86UK0 2595 aa0.94□□□□□ -2.26
PTPRC-208ENST00000427110 EPG5Q9HCE0 2579 aa0.94□□□□□ -2.26
PTPRC-208ENST00000427110 IGKV3-7A0A075B6H7 116 aa0.94□□□□□ -2.26
PTPRC-208ENST00000427110 TRAV12-2A0A075B6T6 113 aa0.94□□□□□ -2.26
PTPRC-208ENST00000427110 TRAV16A0A0A6YYK6 109 aaPredicted RBP0.94□□□□□ -2.26
PTPRC-208ENST00000427110 TRAV4A0A0B4J268 109 aa0.94□□□□□ -2.26
PTPRC-208ENST00000427110 IGHV1-58A0A0C4DH39 117 aa0.94□□□□□ -2.26
PTPRC-208ENST00000427110 A0A0G2JQZ4 141 aa0.94□□□□□ -2.26
PTPRC-208ENST00000427110 TRBV30A0A0K0K1B3 111 aa0.94□□□□□ -2.26
PTPRC-208ENST00000427110 TMEM238C9JI98 176 aa0.94□□□□□ -2.26
PTPRC-208ENST00000427110 H3BMG7 143 aa0.94□□□□□ -2.26
PTPRC-208ENST00000427110 J3QR89 54 aa0.94□□□□□ -2.26
PTPRC-208ENST00000427110 NDUFA1O15239 70 aa0.94□□□□□ -2.26
PTPRC-208ENST00000427110 TIMM17BO60830 172 aa0.94□□□□□ -2.26
PTPRC-208ENST00000427110 IGLV1-51P01701 117 aa0.94□□□□□ -2.26
PTPRC-208ENST00000427110 IGHV3-33P01772 117 aa0.94□□□□□ -2.26
PTPRC-208ENST00000427110 SCGB1A1P11684 91 aa0.94□□□□□ -2.26
PTPRC-208ENST00000427110 IFITM1P13164 125 aa0.94□□□□□ -2.26
PTPRC-208ENST00000427110 WFDC2Q14508 124 aa0.94□□□□□ -2.26
PTPRC-208ENST00000427110 ZNF56Q15929 161 aa0.94□□□□□ -2.26
PTPRC-208ENST00000427110 TMEM170BQ5T4T1 132 aa0.94□□□□□ -2.26
PTPRC-208ENST00000427110 FAM74A4Q5TZK3 123 aa0.94□□□□□ -2.26
PTPRC-208ENST00000427110 NDUFA11Q86Y39 141 aa0.94□□□□□ -2.26
PTPRC-208ENST00000427110 C1orf158Q8N1D5 194 aa0.94□□□□□ -2.26
PTPRC-208ENST00000427110 DAND5Q8N907 189 aa0.94□□□□□ -2.26
PTPRC-208ENST00000427110 TMEM263Q8WUH6 116 aaKnown RBP0.94□□□□□ -2.26
PTPRC-208ENST00000427110 VPS25Q9BRG1 176 aa0.94□□□□□ -2.26
PTPRC-208ENST00000427110 Q9BRP9 147 aa0.94□□□□□ -2.26
PTPRC-208ENST00000427110 SPANXDQ9BXN6 97 aa0.94□□□□□ -2.26
PTPRC-208ENST00000427110 SPANXCQ9NY87 97 aa0.94□□□□□ -2.26
PTPRC-208ENST00000427110 PRO1854Q9UHT4 67 aa0.94□□□□□ -2.26
PTPRC-208ENST00000427110 UBE2D4Q9Y2X8 147 aa0.94□□□□□ -2.26
PTPRC-208ENST00000427110 TLN2Q9Y4G6 2542 aa0.94□□□□□ -2.26
PTPRC-208ENST00000427110 CMYA5Q8N3K9 4069 aa0.94□□□□□ -2.26
PTPRC-208ENST00000427110 SETXQ7Z333 2677 aaKnown RBP0.93□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms