RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 C11orf72Q8NBR9 251 aa8.46□□□□□ -1.05
HMGB1-206ENST00000405805 PRR15LQ9BU68 103 aa8.46□□□□□ -1.05
HMGB1-206ENST00000405805 TRBV6-8A0A0A6YYG3 113 aa8.46□□□□□ -1.06
HMGB1-206ENST00000405805 LINC00337Q8N6G1 96 aa8.46□□□□□ -1.06
HMGB1-206ENST00000405805 UBR5O95071 2799 aaPredicted RBP8.45□□□□□ -1.06
HMGB1-206ENST00000405805 Q8N9L7 120 aa8.45□□□□□ -1.06
HMGB1-206ENST00000405805 KLK12Q9UKR0 248 aa8.44□□□□□ -1.06
HMGB1-206ENST00000405805 PRYO14603 147 aa8.44□□□□□ -1.06
HMGB1-206ENST00000405805 MXRA5Q9NR99 2828 aa8.44□□□□□ -1.06
HMGB1-206ENST00000405805 FAM222AQ5U5X8 452 aa8.44□□□□□ -1.06
HMGB1-206ENST00000405805 Q6ZQY7 126 aa8.44□□□□□ -1.06
HMGB1-206ENST00000405805 XAGE1AQ9HD64 81 aa8.44□□□□□ -1.06
HMGB1-206ENST00000405805 A8MTW9 85 aa8.43□□□□□ -1.06
HMGB1-206ENST00000405805 UBE2BP63146 152 aa8.43□□□□□ -1.06
HMGB1-206ENST00000405805 CYSTM1Q9H1C7 97 aa8.43□□□□□ -1.06
HMGB1-206ENST00000405805 CMC4P56277 68 aaPredicted RBP8.43□□□□□ -1.06
HMGB1-206ENST00000405805 KLK9Q2XQG4 91 aa8.42□□□□□ -1.06
HMGB1-206ENST00000405805 UNC79Q9P2D8 2635 aa8.42□□□□□ -1.06
HMGB1-206ENST00000405805 LINC01006Q8NI28 216 aa8.41□□□□□ -1.06
HMGB1-206ENST00000405805 TRAV10A0A0B4J240 114 aa8.41□□□□□ -1.06
HMGB1-206ENST00000405805 TEP1Q99973 2627 aaKnown RBP8.4□□□□□ -1.06
HMGB1-206ENST00000405805 LINC00959A0A1B0GUT2 108 aa8.4□□□□□ -1.06
HMGB1-206ENST00000405805 BEAN1Q3B7T3 259 aa8.4□□□□□ -1.06
HMGB1-206ENST00000405805 ZNF561-AS1K7EIQ3 104 aa8.4□□□□□ -1.07
HMGB1-206ENST00000405805 NDUFS5O43920 106 aa8.39□□□□□ -1.07
HMGB1-206ENST00000405805 CHCHD10Q8WYQ3 142 aaPredicted RBP8.39□□□□□ -1.07
HMGB1-206ENST00000405805 APCP25054 2843 aa8.39□□□□□ -1.07
HMGB1-206ENST00000405805 SPAG11BQ08648 103 aa8.39□□□□□ -1.07
HMGB1-206ENST00000405805 PRO0255Q9UI72 69 aa8.39□□□□□ -1.07
HMGB1-206ENST00000405805 SETXQ7Z333 2677 aaKnown RBP8.39□□□□□ -1.07
HMGB1-206ENST00000405805 IBA57-AS1B1ANH7 110 aa8.38□□□□□ -1.07
HMGB1-206ENST00000405805 UBE2AP49459 152 aa8.38□□□□□ -1.07
HMGB1-206ENST00000405805 HIGD2AQ9BW72 106 aa8.38□□□□□ -1.07
HMGB1-206ENST00000405805 TRBV6-4A0A1B0GX49 114 aa8.38□□□□□ -1.07
HMGB1-206ENST00000405805 Q5XG85 94 aa8.38□□□□□ -1.07
HMGB1-206ENST00000405805 DIRC1Q969H9 104 aa8.38□□□□□ -1.07
HMGB1-206ENST00000405805 IGLV5-39A0A0G2JS06 123 aa8.38□□□□□ -1.07
HMGB1-206ENST00000405805 TM2D3Q9BRN9 247 aa8.38□□□□□ -1.07
HMGB1-206ENST00000405805 MGAM2Q2M2H8 2515 aa8.37□□□□□ -1.07
HMGB1-206ENST00000405805 PDE6GP18545 87 aa8.37□□□□□ -1.07
HMGB1-206ENST00000405805 LINC01547P58512 204 aaPredicted RBP8.37□□□□□ -1.07
HMGB1-206ENST00000405805 REG3AQ06141 175 aa8.37□□□□□ -1.07
HMGB1-206ENST00000405805 WFDC10BQ8IUB3 73 aa8.37□□□□□ -1.07
HMGB1-206ENST00000405805 WFDC13Q8IUB5 93 aa8.37□□□□□ -1.07
HMGB1-206ENST00000405805 PLAC8L1A1L4L8 177 aa8.36□□□□□ -1.07
HMGB1-206ENST00000405805 Q6ZVQ6 151 aa8.36□□□□□ -1.07
HMGB1-206ENST00000405805 CSMD2Q7Z408 3487 aa8.36□□□□□ -1.07
HMGB1-206ENST00000405805 LYRM9A8MSI8 78 aa8.36□□□□□ -1.07
HMGB1-206ENST00000405805 SERTAD4-AS1Q5TG53 156 aa8.36□□□□□ -1.07
HMGB1-206ENST00000405805 A0A096LNT2 108 aa8.36□□□□□ -1.07
HMGB1-206ENST00000405805 CD164Q04900 197 aa8.36□□□□□ -1.07
HMGB1-206ENST00000405805 FAM104AQ969W3 186 aa8.35□□□□□ -1.07
HMGB1-206ENST00000405805 NKAPP1Q8N9T2 125 aa8.34□□□□□ -1.07
HMGB1-206ENST00000405805 OXTP01178 125 aa8.34□□□□□ -1.07
HMGB1-206ENST00000405805 UNQ6190/PRO20217Q6UXQ8 127 aa8.34□□□□□ -1.07
HMGB1-206ENST00000405805 C6orf223Q8N319 242 aa8.34□□□□□ -1.07
HMGB1-206ENST00000405805 INAFM1C9JVW0 142 aa8.33□□□□□ -1.08
HMGB1-206ENST00000405805 C9orf129Q5T035 196 aaKnown RBP8.33□□□□□ -1.08
HMGB1-206ENST00000405805 CAMK2N2Q96S95 79 aa8.33□□□□□ -1.08
HMGB1-206ENST00000405805 IGKV2-28A0A075B6P5 120 aa8.32□□□□□ -1.08
HMGB1-206ENST00000405805 A8MUN3 132 aa8.32□□□□□ -1.08
HMGB1-206ENST00000405805 IGKV2D-28P01615 120 aa8.32□□□□□ -1.08
HMGB1-206ENST00000405805 IGHV3OR16-9A0A0B4J2B5 98 aa8.32□□□□□ -1.08
HMGB1-206ENST00000405805 H7BZZ5 65 aa8.32□□□□□ -1.08
HMGB1-206ENST00000405805 C4orf48Q5BLP8 95 aa8.32□□□□□ -1.08
HMGB1-206ENST00000405805 IGKV2D-24A0A075B6R9 120 aa8.32□□□□□ -1.08
HMGB1-206ENST00000405805 NIPBLQ6KC79 2804 aaeCLIP8.32□□□□□ -1.08
HMGB1-206ENST00000405805 Q8N814 137 aa8.32□□□□□ -1.08
HMGB1-206ENST00000405805 NOTCH1P46531 2555 aa8.32□□□□□ -1.08
HMGB1-206ENST00000405805 IGLV5-45A0A087WSX0 123 aa8.31□□□□□ -1.08
HMGB1-206ENST00000405805 MDFIQ99750 246 aa8.31□□□□□ -1.08
HMGB1-206ENST00000405805 DEFB121Q5J5C9 76 aa8.31□□□□□ -1.08
HMGB1-206ENST00000405805 LINC00208Q96KT6 92 aa8.31□□□□□ -1.08
HMGB1-206ENST00000405805 COX7BP24311 80 aa8.31□□□□□ -1.08
HMGB1-206ENST00000405805 MAST4O15021 2626 aa8.31□□□□□ -1.08
HMGB1-206ENST00000405805 NBEAL1Q6ZS30 2694 aa8.3□□□□□ -1.08
HMGB1-206ENST00000405805 FSHBP01225 129 aa8.3□□□□□ -1.08
HMGB1-206ENST00000405805 DEFB116Q30KQ4 102 aa8.29□□□□□ -1.08
HMGB1-206ENST00000405805 LY6G6DO95868 133 aa8.29□□□□□ -1.08
HMGB1-206ENST00000405805 CDK2AP2O75956 126 aa8.28□□□□□ -1.08
HMGB1-206ENST00000405805 SPART-AS1P0CW21 52 aa8.27□□□□□ -1.09
HMGB1-206ENST00000405805 APOC4P55056 127 aa8.27□□□□□ -1.09
HMGB1-206ENST00000405805 CYSRT1A8MQ03 144 aa8.27□□□□□ -1.09
HMGB1-206ENST00000405805 IGLV1-51P01701 117 aa8.27□□□□□ -1.09
HMGB1-206ENST00000405805 VPS13CQ709C8 3753 aa8.27□□□□□ -1.09
HMGB1-206ENST00000405805 CD164L2Q6UWJ8 174 aa8.26□□□□□ -1.09
HMGB1-206ENST00000405805 HCG22E2RYF7 251 aa8.25□□□□□ -1.09
HMGB1-206ENST00000405805 C10orf25Q5T742 122 aa8.24□□□□□ -1.09
HMGB1-206ENST00000405805 Q8IZM0 81 aa8.24□□□□□ -1.09
HMGB1-206ENST00000405805 A0A096LNI7 61 aa8.24□□□□□ -1.09
HMGB1-206ENST00000405805 ETDCA0A1B0GVM5 59 aa8.24□□□□□ -1.09
HMGB1-206ENST00000405805 H0Y9J4 135 aa8.24□□□□□ -1.09
HMGB1-206ENST00000405805 H3BS24 57 aa8.24□□□□□ -1.09
HMGB1-206ENST00000405805 LINC00575Q6W349 94 aa8.23□□□□□ -1.09
HMGB1-206ENST00000405805 CR1P17927 2039 aa8.22□□□□□ -1.09
HMGB1-206ENST00000405805 TRBV10-3A0A0K0K1G6 114 aa8.22□□□□□ -1.09
HMGB1-206ENST00000405805 IGKV4-1P06312 121 aa8.22□□□□□ -1.09
HMGB1-206ENST00000405805 GIG44P09565 113 aaPredicted RBP8.22□□□□□ -1.09
HMGB1-206ENST00000405805 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.22□□□□□ -1.09
HMGB1-206ENST00000405805 FP248Q71RG6 208 aaPredicted RBP8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms