RNA–Protein interactions for RNA: ENST00000400337.6

COL18A1-204, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL18A1, Length 5,436 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-204ENST00000400337 SMCR5Q8TEV8 140 aa12.54□□□□□ -0.4
COL18A1-204ENST00000400337 FSHBP01225 129 aa12.54□□□□□ -0.4
COL18A1-204ENST00000400337 CDIP1Q9H305 208 aa12.53□□□□□ -0.4
COL18A1-204ENST00000400337 SBSPONQ8IVN8 264 aa12.53□□□□□ -0.4
COL18A1-204ENST00000400337 MDFIQ99750 246 aa12.53□□□□□ -0.4
COL18A1-204ENST00000400337 MUC4Q99102 2169 aa12.52□□□□□ -0.41
COL18A1-204ENST00000400337 KLK9Q2XQG4 91 aa12.52□□□□□ -0.41
COL18A1-204ENST00000400337 KIAA0087Q14695 138 aa12.5□□□□□ -0.41
COL18A1-204ENST00000400337 RETNLBQ9BQ08 111 aa12.49□□□□□ -0.41
COL18A1-204ENST00000400337 LINC00167Q96N53 147 aa12.49□□□□□ -0.41
COL18A1-204ENST00000400337 TRBV7-7A0A0K0K1E9 115 aa12.48□□□□□ -0.41
COL18A1-204ENST00000400337 H3BNG1 76 aa12.48□□□□□ -0.41
COL18A1-204ENST00000400337 PCOTHQ58A44 107 aa12.48□□□□□ -0.41
COL18A1-204ENST00000400337 SMCPP49901 116 aaPredicted RBP12.47□□□□□ -0.41
COL18A1-204ENST00000400337 FAM218AQ96MZ4 157 aa12.47□□□□□ -0.41
COL18A1-204ENST00000400337 Q8NAQ8 132 aa12.47□□□□□ -0.41
COL18A1-204ENST00000400337 TMEM254Q8TBM7 123 aa12.47□□□□□ -0.41
COL18A1-204ENST00000400337 TRBV7-6A0A0J9YX20 115 aa12.46□□□□□ -0.41
COL18A1-204ENST00000400337 H0Y9P7 68 aa12.45□□□□□ -0.42
COL18A1-204ENST00000400337 HCG22E2RYF7 251 aa12.45□□□□□ -0.42
COL18A1-204ENST00000400337 SPATA3Q8NHX4 192 aa12.45□□□□□ -0.42
COL18A1-204ENST00000400337 F8P00451 2351 aa12.43□□□□□ -0.42
COL18A1-204ENST00000400337 CXCL6P80162 114 aa12.43□□□□□ -0.42
COL18A1-204ENST00000400337 FLNBO75369 2602 aaKnown RBP12.41□□□□□ -0.42
COL18A1-204ENST00000400337 PRO0461Q9UI25 63 aa12.4□□□□□ -0.42
COL18A1-204ENST00000400337 C1orf195Q5TG92 126 aa12.4□□□□□ -0.42
COL18A1-204ENST00000400337 ELOF1P60002 83 aaKnown RBP12.38□□□□□ -0.43
COL18A1-204ENST00000400337 LINC00588Q9Y4M8 146 aa12.37□□□□□ -0.43
COL18A1-204ENST00000400337 PSPHP1O15172 72 aa12.36□□□□□ -0.43
COL18A1-204ENST00000400337 PHF5AQ7RTV0 110 aaKnown RBP12.34□□□□□ -0.43
COL18A1-204ENST00000400337 SMIM29Q86T20 159 aa12.34□□□□□ -0.43
COL18A1-204ENST00000400337 LIMD2Q9BT23 127 aa12.33□□□□□ -0.44
COL18A1-204ENST00000400337 MOBPQ13875 183 aa12.33□□□□□ -0.44
COL18A1-204ENST00000400337 HECTD1Q9ULT8 2610 aa12.33□□□□□ -0.44
COL18A1-204ENST00000400337 SPINK1P00995 79 aa12.32□□□□□ -0.44
COL18A1-204ENST00000400337 LITAFQ99732 161 aa12.32□□□□□ -0.44
COL18A1-204ENST00000400337 PMAIP1Q13794 54 aa12.32□□□□□ -0.44
COL18A1-204ENST00000400337 hDV103S1A0JD37 113 aa12.31□□□□□ -0.44
COL18A1-204ENST00000400337 Q6ZRX8 168 aa12.31□□□□□ -0.44
COL18A1-204ENST00000400337 C1orf64Q8NEQ6 169 aa12.31□□□□□ -0.44
COL18A1-204ENST00000400337 NBDYA0A0U1RRE5 68 aa12.31□□□□□ -0.44
COL18A1-204ENST00000400337 CSNK1G2-AS1Q8NCQ2 148 aa12.3□□□□□ -0.44
COL18A1-204ENST00000400337 A0A096LNT2 108 aa12.29□□□□□ -0.44
COL18A1-204ENST00000400337 GVQW2A0A096LPI5 108 aaPredicted RBP12.29□□□□□ -0.44
COL18A1-204ENST00000400337 Q6ZQT0 140 aa12.28□□□□□ -0.44
COL18A1-204ENST00000400337 PCNTO95613 3336 aa12.27□□□□□ -0.44
COL18A1-204ENST00000400337 ST20-AS1Q8NBB2 130 aa12.27□□□□□ -0.44
COL18A1-204ENST00000400337 CRYGAP11844 174 aa12.27□□□□□ -0.45
COL18A1-204ENST00000400337 Q6ZRP5 223 aa12.27□□□□□ -0.45
COL18A1-204ENST00000400337 C16orf90A8MZG2 172 aa12.27□□□□□ -0.45
COL18A1-204ENST00000400337 SPACA4Q8TDM5 124 aa12.26□□□□□ -0.45
COL18A1-204ENST00000400337 LINC00476Q8WZB0 136 aa12.26□□□□□ -0.45
COL18A1-204ENST00000400337 RTL8CO15255 209 aa12.26□□□□□ -0.45
COL18A1-204ENST00000400337 EPM2AB3EWF7 344 aa12.25□□□□□ -0.45
COL18A1-204ENST00000400337 CHTF8P0CG12 524 aa12.24□□□□□ -0.45
COL18A1-204ENST00000400337 Q8NBF4 154 aa12.24□□□□□ -0.45
COL18A1-204ENST00000400337 DNAH10OSP0CZ25 163 aa12.24□□□□□ -0.45
COL18A1-204ENST00000400337 IGKV2D-30A0A075B6S6 120 aa12.23□□□□□ -0.45
COL18A1-204ENST00000400337 IGKV2-30P06310 120 aa12.23□□□□□ -0.45
COL18A1-204ENST00000400337 USP24Q9UPU5 2620 aa12.23□□□□□ -0.45
COL18A1-204ENST00000400337 CHD7Q9P2D1 2997 aa12.23□□□□□ -0.45
COL18A1-204ENST00000400337 LOC110117498A0A087WWA1 95 aa12.22□□□□□ -0.45
COL18A1-204ENST00000400337 VPREB1P12018 145 aa12.21□□□□□ -0.45
COL18A1-204ENST00000400337 A0A1B0GW54 56 aa12.2□□□□□ -0.46
COL18A1-204ENST00000400337 WWC2-AS2Q96NR7 200 aa12.2□□□□□ -0.46
COL18A1-204ENST00000400337 FAM168BA1KXE4 195 aa12.19□□□□□ -0.46
COL18A1-204ENST00000400337 BCE1O60756 84 aa12.19□□□□□ -0.46
COL18A1-204ENST00000400337 C5orf42Q9H799 3197 aa12.19□□□□□ -0.46
COL18A1-204ENST00000400337 IGLV6-57P01721 117 aa12.18□□□□□ -0.46
COL18A1-204ENST00000400337 GIG44P09565 113 aaPredicted RBP12.18□□□□□ -0.46
COL18A1-204ENST00000400337 MGAM2Q2M2H8 2515 aa12.18□□□□□ -0.46
COL18A1-204ENST00000400337 KRTAP10-11P60412 298 aa12.18□□□□□ -0.46
COL18A1-204ENST00000400337 EIF4EBP3O60516 100 aaPredicted RBP12.17□□□□□ -0.46
COL18A1-204ENST00000400337 C19orf73Q9NVV2 129 aa12.17□□□□□ -0.46
COL18A1-204ENST00000400337 KRTAP10-3P60369 221 aa12.16□□□□□ -0.46
COL18A1-204ENST00000400337 TP53AIP1Q9HCN2 124 aa12.16□□□□□ -0.46
COL18A1-204ENST00000400337 SERTAD4-AS1Q5TG53 156 aa12.15□□□□□ -0.47
COL18A1-204ENST00000400337 K7EIL1 84 aa12.12□□□□□ -0.47
COL18A1-204ENST00000400337 RPL37AP61513 92 aaKnown RBP12.12□□□□□ -0.47
COL18A1-204ENST00000400337 BPTFQ12830 3046 aa12.1□□□□□ -0.47
COL18A1-204ENST00000400337 C7orf65Q6ZTY9 151 aa12.1□□□□□ -0.47
COL18A1-204ENST00000400337 TM2D3Q9BRN9 247 aa12.1□□□□□ -0.47
COL18A1-204ENST00000400337 PRR34Q9NV39 138 aa12.1□□□□□ -0.47
COL18A1-204ENST00000400337 IGLV1-50A0A075B6I6 118 aa12.07□□□□□ -0.48
COL18A1-204ENST00000400337 FAM229AH3BQW9 127 aa12.07□□□□□ -0.48
COL18A1-204ENST00000400337 TYMSOSQ8TAI1 123 aa12.07□□□□□ -0.48
COL18A1-204ENST00000400337 TRBV7-4A0A0J9YYF1 115 aa12.05□□□□□ -0.48
COL18A1-204ENST00000400337 C15orf56Q8N910 161 aa12.05□□□□□ -0.48
COL18A1-204ENST00000400337 KCNQ1DNQ9H478 68 aa12.05□□□□□ -0.48
COL18A1-204ENST00000400337 LINC00612Q8N6U2 182 aa12.05□□□□□ -0.48
COL18A1-204ENST00000400337 ACYP2P14621 99 aa12.04□□□□□ -0.48
COL18A1-204ENST00000400337 KRTAP1-3Q8IUG1 177 aa12.04□□□□□ -0.48
COL18A1-204ENST00000400337 LINC00313P59037 77 aa12.04□□□□□ -0.48
COL18A1-204ENST00000400337 LINC00528Q8N1L1 170 aa12.04□□□□□ -0.48
COL18A1-204ENST00000400337 TRAV22A0A0B4J277 110 aa12.03□□□□□ -0.48
COL18A1-204ENST00000400337 A0A1B0GU69 56 aa12.03□□□□□ -0.48
COL18A1-204ENST00000400337 H3BPC8 53 aa12.02□□□□□ -0.49
COL18A1-204ENST00000400337 RPS28P62857 69 aaKnown RBP12.02□□□□□ -0.49
COL18A1-204ENST00000400337 RANBP2P49792 3224 aaKnown RBP12.01□□□□□ -0.49
COL18A1-204ENST00000400337 FLNAP21333 2647 aaKnown RBP12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms