RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 C4orf26Q17RF5 130 aa4.52□□□□□ -1.69
SMC1A-202ENST00000375340 CELSR3Q9NYQ7 3312 aa4.52□□□□□ -1.69
SMC1A-202ENST00000375340 GCN1Q92616 2671 aaKnown RBP4.52□□□□□ -1.69
SMC1A-202ENST00000375340 ATP5EP56381 51 aaPredicted RBP4.52□□□□□ -1.69
SMC1A-202ENST00000375340 CFAP54Q96N23 3096 aa4.51□□□□□ -1.69
SMC1A-202ENST00000375340 REG3GQ6UW15 175 aa4.51□□□□□ -1.69
SMC1A-202ENST00000375340 TRAV10A0A0B4J240 114 aa4.51□□□□□ -1.69
SMC1A-202ENST00000375340 PRYO14603 147 aa4.51□□□□□ -1.69
SMC1A-202ENST00000375340 PLAC8L1A1L4L8 177 aa4.51□□□□□ -1.69
SMC1A-202ENST00000375340 NDUFC1O43677 76 aa4.51□□□□□ -1.69
SMC1A-202ENST00000375340 C1orf137Q5JT78 98 aa4.51□□□□□ -1.69
SMC1A-202ENST00000375340 C6orf48Q9UBA6 75 aa4.51□□□□□ -1.69
SMC1A-202ENST00000375340 TRIOO75962 3097 aa4.5□□□□□ -1.69
SMC1A-202ENST00000375340 EGFEM1PQ0D2K5 195 aa4.5□□□□□ -1.69
SMC1A-202ENST00000375340 MUC7Q8TAX7 377 aa4.5□□□□□ -1.69
SMC1A-202ENST00000375340 SPATA3Q8NHX4 192 aa4.5□□□□□ -1.69
SMC1A-202ENST00000375340 SVIPQ8NHG7 77 aa4.5□□□□□ -1.69
SMC1A-202ENST00000375340 SPEGQ15772 3267 aa4.5□□□□□ -1.69
SMC1A-202ENST00000375340 NHLRC4P0CG21 123 aaPredicted RBP4.49□□□□□ -1.69
SMC1A-202ENST00000375340 X6R8D5 127 aa4.49□□□□□ -1.69
SMC1A-202ENST00000375340 C14orf177Q52M58 125 aa4.49□□□□□ -1.69
SMC1A-202ENST00000375340 Q6ZQT0 140 aa4.49□□□□□ -1.69
SMC1A-202ENST00000375340 SMIM29Q86T20 159 aa4.49□□□□□ -1.69
SMC1A-202ENST00000375340 FLNBO75369 2602 aaKnown RBP4.48□□□□□ -1.69
SMC1A-202ENST00000375340 AKAP13Q12802 2813 aa4.48□□□□□ -1.69
SMC1A-202ENST00000375340 EYSQ5T1H1 3165 aa4.48□□□□□ -1.69
SMC1A-202ENST00000375340 LINC01561Q8N1V8 128 aa4.48□□□□□ -1.69
SMC1A-202ENST00000375340 DSPP15924 2871 aaKnown RBP4.48□□□□□ -1.69
SMC1A-202ENST00000375340 PSPHP1O15172 72 aa4.48□□□□□ -1.69
SMC1A-202ENST00000375340 KIAA0087Q14695 138 aa4.48□□□□□ -1.69
SMC1A-202ENST00000375340 MAST4O15021 2626 aa4.48□□□□□ -1.69
SMC1A-202ENST00000375340 TRBV7-6A0A0J9YX20 115 aa4.48□□□□□ -1.69
SMC1A-202ENST00000375340 C9orf129Q5T035 196 aaKnown RBP4.48□□□□□ -1.69
SMC1A-202ENST00000375340 MRPL55Q7Z7F7 128 aaKnown RBP4.47□□□□□ -1.69
SMC1A-202ENST00000375340 ATRQ13535 2644 aa4.47□□□□□ -1.69
SMC1A-202ENST00000375340 PRLHP81277 87 aa4.47□□□□□ -1.69
SMC1A-202ENST00000375340 SPINK6Q6UWN8 80 aa4.47□□□□□ -1.69
SMC1A-202ENST00000375340 RETNLBQ9BQ08 111 aa4.47□□□□□ -1.69
SMC1A-202ENST00000375340 CFAP46Q8IYW2 2715 aa4.47□□□□□ -1.69
SMC1A-202ENST00000375340 CXCL6P80162 114 aa4.47□□□□□ -1.69
SMC1A-202ENST00000375340 CRYGAP11844 174 aa4.47□□□□□ -1.69
SMC1A-202ENST00000375340 SMIM26A0A096LP01 95 aa4.46□□□□□ -1.69
SMC1A-202ENST00000375340 TMEM254Q8TBM7 123 aa4.46□□□□□ -1.7
SMC1A-202ENST00000375340 Q9BRP9 147 aa4.46□□□□□ -1.7
SMC1A-202ENST00000375340 IL17DQ8TAD2 202 aa4.46□□□□□ -1.7
SMC1A-202ENST00000375340 ITPR3Q14573 2671 aa4.46□□□□□ -1.7
SMC1A-202ENST00000375340 ESRGQ1W209 222 aa4.46□□□□□ -1.7
SMC1A-202ENST00000375340 PRR15LQ9BU68 103 aa4.45□□□□□ -1.7
SMC1A-202ENST00000375340 FREM2Q5SZK8 3169 aa4.45□□□□□ -1.7
SMC1A-202ENST00000375340 FAM168BA1KXE4 195 aa4.45□□□□□ -1.7
SMC1A-202ENST00000375340 ELOF1P60002 83 aaKnown RBP4.45□□□□□ -1.7
SMC1A-202ENST00000375340 C1orf195Q5TG92 126 aa4.45□□□□□ -1.7
SMC1A-202ENST00000375340 C7orf33Q8WU49 177 aa4.45□□□□□ -1.7
SMC1A-202ENST00000375340 WDFY3Q8IZQ1 3526 aa4.45□□□□□ -1.7
SMC1A-202ENST00000375340 TM2D3Q9BRN9 247 aa4.45□□□□□ -1.7
SMC1A-202ENST00000375340 CSNK1G2-AS1Q8NCQ2 148 aa4.44□□□□□ -1.7
SMC1A-202ENST00000375340 C2orf48Q96LS8 159 aa4.44□□□□□ -1.7
SMC1A-202ENST00000375340 FSHBP01225 129 aa4.44□□□□□ -1.7
SMC1A-202ENST00000375340 LINC00208Q96KT6 92 aa4.44□□□□□ -1.7
SMC1A-202ENST00000375340 LOC110117498A0A087WWA1 95 aa4.44□□□□□ -1.7
SMC1A-202ENST00000375340 HCG22E2RYF7 251 aa4.44□□□□□ -1.7
SMC1A-202ENST00000375340 IGHV6-1A0A0B4J1U7 121 aa4.44□□□□□ -1.7
SMC1A-202ENST00000375340 ST20-AS1Q8NBB2 130 aa4.44□□□□□ -1.7
SMC1A-202ENST00000375340 V9GYY9 64 aa4.44□□□□□ -1.7
SMC1A-202ENST00000375340 FLNCQ14315 2725 aa4.44□□□□□ -1.7
SMC1A-202ENST00000375340 PCOTHQ58A44 107 aa4.43□□□□□ -1.7
SMC1A-202ENST00000375340 C22orf24Q9Y442 160 aa4.43□□□□□ -1.7
SMC1A-202ENST00000375340 A0A087WSZ3 146 aa4.43□□□□□ -1.7
SMC1A-202ENST00000375340 GIG44P09565 113 aaPredicted RBP4.43□□□□□ -1.7
SMC1A-202ENST00000375340 FAM104AQ969W3 186 aa4.43□□□□□ -1.7
SMC1A-202ENST00000375340 A6NED7 52 aa4.43□□□□□ -1.7
SMC1A-202ENST00000375340 CHD6Q8TD26 2715 aa4.43□□□□□ -1.7
SMC1A-202ENST00000375340 SEC61GP60059 68 aa4.43□□□□□ -1.7
SMC1A-202ENST00000375340 HECTD1Q9ULT8 2610 aa4.43□□□□□ -1.7
SMC1A-202ENST00000375340 A0A096LNT2 108 aa4.43□□□□□ -1.7
SMC1A-202ENST00000375340 KRTAP10-3P60369 221 aa4.43□□□□□ -1.7
SMC1A-202ENST00000375340 H0Y9P7 68 aa4.42□□□□□ -1.7
SMC1A-202ENST00000375340 CASC2Q6XLA1 102 aa4.42□□□□□ -1.7
SMC1A-202ENST00000375340 COL6A3P12111 3177 aa4.42□□□□□ -1.7
SMC1A-202ENST00000375340 VPS13AQ96RL7 3174 aa4.42□□□□□ -1.7
SMC1A-202ENST00000375340 Q8NAQ8 132 aa4.42□□□□□ -1.7
SMC1A-202ENST00000375340 HELZ2Q9BYK8 2649 aaKnown RBP4.41□□□□□ -1.7
SMC1A-202ENST00000375340 RPL37AP61513 92 aaKnown RBP4.41□□□□□ -1.7
SMC1A-202ENST00000375340 IGLV6-57P01721 117 aa4.41□□□□□ -1.7
SMC1A-202ENST00000375340 LINC00167Q96N53 147 aa4.41□□□□□ -1.7
SMC1A-202ENST00000375340 Q6ZRP5 223 aa4.4□□□□□ -1.7
SMC1A-202ENST00000375340 SERTAD4-AS1Q5TG53 156 aa4.4□□□□□ -1.71
SMC1A-202ENST00000375340 CIRBP-AS1Q8TBR5 109 aa4.4□□□□□ -1.71
SMC1A-202ENST00000375340 LINC01556Q5JQF7 62 aa4.4□□□□□ -1.71
SMC1A-202ENST00000375340 K7ERS5 55 aa4.39□□□□□ -1.71
SMC1A-202ENST00000375340 CR1P17927 2039 aa4.39□□□□□ -1.71
SMC1A-202ENST00000375340 C4orf48Q5BLP8 95 aa4.39□□□□□ -1.71
SMC1A-202ENST00000375340 ZNF706Q9Y5V0 76 aaPredicted RBP4.39□□□□□ -1.71
SMC1A-202ENST00000375340 FRYLO94915 3013 aa4.38□□□□□ -1.71
SMC1A-202ENST00000375340 Q6ZRX8 168 aa4.38□□□□□ -1.71
SMC1A-202ENST00000375340 A0A0G2JQZ4 141 aa4.38□□□□□ -1.71
SMC1A-202ENST00000375340 A0A1W2PNN7 141 aa4.38□□□□□ -1.71
SMC1A-202ENST00000375340 DMDP11532 3685 aa4.38□□□□□ -1.71
SMC1A-202ENST00000375340 F8WDY8 70 aa4.38□□□□□ -1.71
SMC1A-202ENST00000375340 LY6G6CO95867 125 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms