RNA–Protein interactions for RNA: ENST00000374732.7

USP48-203, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 3,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-203ENST00000374732 KRTAP1-3Q8IUG1 177 aa5.22□□□□□ -1.57
USP48-203ENST00000374732 MED13LQ71F56 2210 aa5.21□□□□□ -1.57
USP48-203ENST00000374732 IGLV4-69A0A075B6H9 119 aa5.21□□□□□ -1.57
USP48-203ENST00000374732 A6NDX4 124 aa5.21□□□□□ -1.57
USP48-203ENST00000374732 G3V318 75 aa5.21□□□□□ -1.57
USP48-203ENST00000374732 CAMK2N2Q96S95 79 aa5.21□□□□□ -1.57
USP48-203ENST00000374732 SPTBN2O15020 2390 aa5.21□□□□□ -1.57
USP48-203ENST00000374732 DCHS2Q6V1P9 2916 aa5.21□□□□□ -1.58
USP48-203ENST00000374732 IGKV2-40A0A087WW87 121 aaPredicted RBP5.21□□□□□ -1.58
USP48-203ENST00000374732 IGKV2D-40P01614 121 aaPredicted RBP5.21□□□□□ -1.58
USP48-203ENST00000374732 C9orf47Q6ZRZ4 202 aa5.21□□□□□ -1.58
USP48-203ENST00000374732 C20orf166-AS1Q96NR2 134 aa5.21□□□□□ -1.58
USP48-203ENST00000374732 OCR1Q9BZK8 76 aa5.21□□□□□ -1.58
USP48-203ENST00000374732 LENEPQ9Y5L5 61 aa5.21□□□□□ -1.58
USP48-203ENST00000374732 LRBAP50851 2863 aa5.21□□□□□ -1.58
USP48-203ENST00000374732 IGHV3-49A0A0A0MS15 119 aa5.21□□□□□ -1.58
USP48-203ENST00000374732 A0A0J9YX75 114 aa5.21□□□□□ -1.58
USP48-203ENST00000374732 NDUFA4O00483 81 aa5.21□□□□□ -1.58
USP48-203ENST00000374732 MSMBP08118 114 aa5.21□□□□□ -1.58
USP48-203ENST00000374732 LITAFQ99732 161 aa5.2□□□□□ -1.58
USP48-203ENST00000374732 HIVEP3Q5T1R4 2406 aa5.2□□□□□ -1.58
USP48-203ENST00000374732 IGHV3-64A0A075B6Q5 118 aa5.2□□□□□ -1.58
USP48-203ENST00000374732 CIRBP-AS1Q8TBR5 109 aa5.2□□□□□ -1.58
USP48-203ENST00000374732 DOPEY1Q5JWR5 2465 aa5.2□□□□□ -1.58
USP48-203ENST00000374732 LINC00208Q96KT6 92 aa5.19□□□□□ -1.58
USP48-203ENST00000374732 IGHV4-30-2A0A087WSY4 118 aa5.19□□□□□ -1.58
USP48-203ENST00000374732 IGLV1-40P01703 118 aa5.19□□□□□ -1.58
USP48-203ENST00000374732 Q6ZTI0 123 aa5.18□□□□□ -1.58
USP48-203ENST00000374732 IGHV4-4A0A075B6R2 117 aa5.18□□□□□ -1.58
USP48-203ENST00000374732 SPTA1P02549 2419 aa5.18□□□□□ -1.58
USP48-203ENST00000374732 PRAC2D3DTV9 90 aa5.18□□□□□ -1.58
USP48-203ENST00000374732 C2orf66Q6UXQ4 117 aa5.18□□□□□ -1.58
USP48-203ENST00000374732 BRD3OSQ6XYD6 125 aa5.18□□□□□ -1.58
USP48-203ENST00000374732 H3BUX3 64 aa5.17□□□□□ -1.58
USP48-203ENST00000374732 LINC01006Q8NI28 216 aa5.17□□□□□ -1.58
USP48-203ENST00000374732 LINC00167Q96N53 147 aa5.17□□□□□ -1.58
USP48-203ENST00000374732 IGFL4Q6B9Z1 124 aa5.17□□□□□ -1.58
USP48-203ENST00000374732 ABCA1O95477 2261 aa5.16□□□□□ -1.58
USP48-203ENST00000374732 A0A096LNT2 108 aa5.16□□□□□ -1.58
USP48-203ENST00000374732 JMJD7-PLA2G4BH0Y9G9 81 aa5.16□□□□□ -1.58
USP48-203ENST00000374732 MGPP08493 103 aa5.16□□□□□ -1.58
USP48-203ENST00000374732 RNASE3P12724 160 aaKnown RBP5.15□□□□□ -1.58
USP48-203ENST00000374732 LINC00483Q53H64 154 aa5.15□□□□□ -1.58
USP48-203ENST00000374732 RELNP78509 3460 aa5.15□□□□□ -1.59
USP48-203ENST00000374732 TACC2O95359 2948 aa5.15□□□□□ -1.59
USP48-203ENST00000374732 IGHV3-66A0A0C4DH42 116 aa5.15□□□□□ -1.59
USP48-203ENST00000374732 IGHV7-4-1A0A0J9YVY3 117 aa5.15□□□□□ -1.59
USP48-203ENST00000374732 PTPN13Q12923 2485 aa5.14□□□□□ -1.59
USP48-203ENST00000374732 ABCA2Q9BZC7 2435 aa5.14□□□□□ -1.59
USP48-203ENST00000374732 ELOF1P60002 83 aaKnown RBP5.14□□□□□ -1.59
USP48-203ENST00000374732 LY6EQ16553 131 aa5.14□□□□□ -1.59
USP48-203ENST00000374732 UNC79Q9P2D8 2635 aa5.14□□□□□ -1.59
USP48-203ENST00000374732 PDZD2O15018 2839 aa5.14□□□□□ -1.59
USP48-203ENST00000374732 LINC00467Q9BRT7 94 aa5.14□□□□□ -1.59
USP48-203ENST00000374732 SMIM2Q9BVW6 85 aa5.14□□□□□ -1.59
USP48-203ENST00000374732 A0A087WYN8 130 aa5.13□□□□□ -1.59
USP48-203ENST00000374732 SMIM29Q86T20 159 aa5.13□□□□□ -1.59
USP48-203ENST00000374732 FASNP49327 2511 aaKnown RBP5.13□□□□□ -1.59
USP48-203ENST00000374732 Q9BRP9 147 aa5.13□□□□□ -1.59
USP48-203ENST00000374732 WNK2Q9Y3S1 2297 aa5.13□□□□□ -1.59
USP48-203ENST00000374732 AKAP9Q99996 3911 aa5.13□□□□□ -1.59
USP48-203ENST00000374732 FAM74A4Q5TZK3 123 aa5.13□□□□□ -1.59
USP48-203ENST00000374732 RHPN1-AS1Q9BWJ2 59 aa5.13□□□□□ -1.59
USP48-203ENST00000374732 ZFYVE26Q68DK2 2539 aa5.12□□□□□ -1.59
USP48-203ENST00000374732 IGLV5-37A0A075B6J1 123 aa5.12□□□□□ -1.59
USP48-203ENST00000374732 TLX1NBP0CAT3 122 aa5.12□□□□□ -1.59
USP48-203ENST00000374732 DNAH10OSP0CZ25 163 aa5.12□□□□□ -1.59
USP48-203ENST00000374732 KRTAP10-9P60411 292 aa5.12□□□□□ -1.59
USP48-203ENST00000374732 C7orf33Q8WU49 177 aa5.12□□□□□ -1.59
USP48-203ENST00000374732 SPTBN1Q01082 2364 aaKnown RBP5.12□□□□□ -1.59
USP48-203ENST00000374732 DEFB112Q30KQ8 113 aa5.12□□□□□ -1.59
USP48-203ENST00000374732 KRTAP1-1Q07627 177 aa5.11□□□□□ -1.59
USP48-203ENST00000374732 ZCCHC13Q8WW36 166 aaKnown RBP5.11□□□□□ -1.59
USP48-203ENST00000374732 A8MUU9 505 aa5.11□□□□□ -1.59
USP48-203ENST00000374732 SLPIP03973 132 aa5.11□□□□□ -1.59
USP48-203ENST00000374732 Q6YL49 198 aa5.11□□□□□ -1.59
USP48-203ENST00000374732 WFDC10AQ9H1F0 79 aa5.11□□□□□ -1.59
USP48-203ENST00000374732 LINC01558Q9Y6Z2 57 aa5.11□□□□□ -1.59
USP48-203ENST00000374732 NBASA2RRP1 2371 aa5.11□□□□□ -1.59
USP48-203ENST00000374732 IGLV8-61A0A075B6I0 122 aa5.1□□□□□ -1.59
USP48-203ENST00000374732 PRR9Q5T870 116 aa5.1□□□□□ -1.59
USP48-203ENST00000374732 NDUFB1O75438 58 aa5.1□□□□□ -1.59
USP48-203ENST00000374732 CASC10Q5T4H9 136 aa5.1□□□□□ -1.59
USP48-203ENST00000374732 NTM-AS1Q6ZSK4 140 aa5.1□□□□□ -1.59
USP48-203ENST00000374732 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.1□□□□□ -1.59
USP48-203ENST00000374732 SETXQ7Z333 2677 aaKnown RBP5.1□□□□□ -1.59
USP48-203ENST00000374732 IGLV4-3A0A075B6K6 122 aa5.1□□□□□ -1.59
USP48-203ENST00000374732 IGKV2-29A2NJV5 120 aaPredicted RBP5.1□□□□□ -1.59
USP48-203ENST00000374732 IGKV3-20P01619 116 aa5.1□□□□□ -1.59
USP48-203ENST00000374732 MAST4O15021 2626 aa5.09□□□□□ -1.59
USP48-203ENST00000374732 DOPEY2Q9Y3R5 2298 aa5.09□□□□□ -1.59
USP48-203ENST00000374732 IGHV3-53P01767 116 aa5.09□□□□□ -1.6
USP48-203ENST00000374732 MUC7Q8TAX7 377 aa5.08□□□□□ -1.6
USP48-203ENST00000374732 USP9YO00507 2555 aaPredicted RBP5.08□□□□□ -1.6
USP48-203ENST00000374732 COX7B2Q8TF08 81 aa5.08□□□□□ -1.6
USP48-203ENST00000374732 IGHV4OR15-8A0A075B7B6 117 aa5.07□□□□□ -1.6
USP48-203ENST00000374732 A0A087WW49 117 aa5.07□□□□□ -1.6
USP48-203ENST00000374732 LCE6AA0A183 80 aa5.07□□□□□ -1.6
USP48-203ENST00000374732 H0YGX0 51 aa5.07□□□□□ -1.6
USP48-203ENST00000374732 LINC00308Q8TCZ7 52 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms