RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 LINC01600Q96MT4 127 aa10.12□□□□□ -0.79
TCOF1-201ENST00000323668 RETNQ9HD89 108 aa10.12□□□□□ -0.79
TCOF1-201ENST00000323668 SVIPQ8NHG7 77 aa10.12□□□□□ -0.79
TCOF1-201ENST00000323668 C2orf48Q96LS8 159 aa10.12□□□□□ -0.79
TCOF1-201ENST00000323668 GIG44P09565 113 aaPredicted RBP10.12□□□□□ -0.79
TCOF1-201ENST00000323668 FAM104AQ969W3 186 aa10.12□□□□□ -0.79
TCOF1-201ENST00000323668 Q6ZRU5 148 aa10.11□□□□□ -0.79
TCOF1-201ENST00000323668 SERP1Q9Y6X1 66 aa10.11□□□□□ -0.79
TCOF1-201ENST00000323668 FLNAP21333 2647 aaKnown RBP10.11□□□□□ -0.79
TCOF1-201ENST00000323668 A0A0J9YWU9 116 aa10.11□□□□□ -0.79
TCOF1-201ENST00000323668 NDUFS5O43920 106 aa10.1□□□□□ -0.79
TCOF1-201ENST00000323668 SMIM26A0A096LP01 95 aa10.1□□□□□ -0.79
TCOF1-201ENST00000323668 HRCT1Q6UXD1 115 aa10.1□□□□□ -0.79
TCOF1-201ENST00000323668 CXCL6P80162 114 aa10.1□□□□□ -0.79
TCOF1-201ENST00000323668 PLAC8L1A1L4L8 177 aa10.09□□□□□ -0.79
TCOF1-201ENST00000323668 COL6A3P12111 3177 aa10.09□□□□□ -0.79
TCOF1-201ENST00000323668 SPATA3Q8NHX4 192 aa10.09□□□□□ -0.79
TCOF1-201ENST00000323668 C6orf48Q9UBA6 75 aa10.09□□□□□ -0.79
TCOF1-201ENST00000323668 C14orf177Q52M58 125 aa10.08□□□□□ -0.8
TCOF1-201ENST00000323668 C1orf137Q5JT78 98 aa10.08□□□□□ -0.8
TCOF1-201ENST00000323668 H0Y9J4 135 aa10.08□□□□□ -0.8
TCOF1-201ENST00000323668 KALRNO60229 2985 aa10.07□□□□□ -0.8
TCOF1-201ENST00000323668 Q6ZQT0 140 aa10.07□□□□□ -0.8
TCOF1-201ENST00000323668 RPS28P62857 69 aaKnown RBP10.07□□□□□ -0.8
TCOF1-201ENST00000323668 A0A096LNI7 61 aa10.07□□□□□ -0.8
TCOF1-201ENST00000323668 C19orf73Q9NVV2 129 aa10.06□□□□□ -0.8
TCOF1-201ENST00000323668 B9D2Q9BPU9 175 aa10.06□□□□□ -0.8
TCOF1-201ENST00000323668 F8WDY8 70 aa10.06□□□□□ -0.8
TCOF1-201ENST00000323668 MYO15AQ9UKN7 3530 aa10.05□□□□□ -0.8
TCOF1-201ENST00000323668 BCE1O60756 84 aa10.05□□□□□ -0.8
TCOF1-201ENST00000323668 LOC110117498A0A087WWA1 95 aa10.04□□□□□ -0.8
TCOF1-201ENST00000323668 FAM30AQ9NZY2 134 aa10.04□□□□□ -0.8
TCOF1-201ENST00000323668 ITPR3Q14573 2671 aa10.04□□□□□ -0.8
TCOF1-201ENST00000323668 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.04□□□□□ -0.8
TCOF1-201ENST00000323668 TMEM254Q8TBM7 123 aa10.04□□□□□ -0.8
TCOF1-201ENST00000323668 WFDC13Q8IUB5 93 aa10.03□□□□□ -0.8
TCOF1-201ENST00000323668 KIAA0087Q14695 138 aa10.02□□□□□ -0.8
TCOF1-201ENST00000323668 Q8N9L7 120 aa10.01□□□□□ -0.81
TCOF1-201ENST00000323668 ELOF1P60002 83 aaKnown RBP10.01□□□□□ -0.81
TCOF1-201ENST00000323668 TRBV7-6A0A0J9YX20 115 aa10□□□□□ -0.81
TCOF1-201ENST00000323668 Q8NAQ8 132 aa10□□□□□ -0.81
TCOF1-201ENST00000323668 PRYO14603 147 aa10□□□□□ -0.81
TCOF1-201ENST00000323668 HECTD1Q9ULT8 2610 aa10□□□□□ -0.81
TCOF1-201ENST00000323668 C9orf129Q5T035 196 aaKnown RBP10□□□□□ -0.81
TCOF1-201ENST00000323668 IGLV6-57P01721 117 aa9.99□□□□□ -0.81
TCOF1-201ENST00000323668 F8P00451 2351 aa9.99□□□□□ -0.81
TCOF1-201ENST00000323668 GVQW2A0A096LPI5 108 aaPredicted RBP9.99□□□□□ -0.81
TCOF1-201ENST00000323668 PRR4Q16378 134 aa9.98□□□□□ -0.81
TCOF1-201ENST00000323668 ESRGQ1W209 222 aa9.98□□□□□ -0.81
TCOF1-201ENST00000323668 LINC00612Q8N6U2 182 aa9.98□□□□□ -0.81
TCOF1-201ENST00000323668 C7orf33Q8WU49 177 aa9.97□□□□□ -0.81
TCOF1-201ENST00000323668 TACC2O95359 2948 aa9.97□□□□□ -0.81
TCOF1-201ENST00000323668 USP34Q70CQ2 3546 aa9.97□□□□□ -0.81
TCOF1-201ENST00000323668 LINC01556Q5JQF7 62 aa9.96□□□□□ -0.81
TCOF1-201ENST00000323668 REG3GQ6UW15 175 aa9.96□□□□□ -0.81
TCOF1-201ENST00000323668 ATMQ13315 3056 aa9.96□□□□□ -0.81
TCOF1-201ENST00000323668 MRPL55Q7Z7F7 128 aaKnown RBP9.96□□□□□ -0.82
TCOF1-201ENST00000323668 CFAP46Q8IYW2 2715 aa9.95□□□□□ -0.82
TCOF1-201ENST00000323668 H3BNG1 76 aa9.95□□□□□ -0.82
TCOF1-201ENST00000323668 A0A0U1RQV1 116 aa9.95□□□□□ -0.82
TCOF1-201ENST00000323668 DMXL2Q8TDJ6 3036 aa9.94□□□□□ -0.82
TCOF1-201ENST00000323668 VPREB1P12018 145 aa9.93□□□□□ -0.82
TCOF1-201ENST00000323668 LOC400499M0QZD8 3231 aa9.92□□□□□ -0.82
TCOF1-201ENST00000323668 LRBAP50851 2863 aa9.92□□□□□ -0.82
TCOF1-201ENST00000323668 ATRQ13535 2644 aa9.92□□□□□ -0.82
TCOF1-201ENST00000323668 CHD6Q8TD26 2715 aa9.92□□□□□ -0.82
TCOF1-201ENST00000323668 FLNBO75369 2602 aaKnown RBP9.92□□□□□ -0.82
TCOF1-201ENST00000323668 C22orf24Q9Y442 160 aa9.92□□□□□ -0.82
TCOF1-201ENST00000323668 PRR34Q9NV39 138 aa9.91□□□□□ -0.82
TCOF1-201ENST00000323668 USP24Q9UPU5 2620 aa9.91□□□□□ -0.82
TCOF1-201ENST00000323668 TM2D3Q9BRN9 247 aa9.9□□□□□ -0.82
TCOF1-201ENST00000323668 A0A087WSZ3 146 aa9.9□□□□□ -0.83
TCOF1-201ENST00000323668 OBSCN-AS1Q96MR7 158 aa9.9□□□□□ -0.83
TCOF1-201ENST00000323668 KRTAP1-3Q8IUG1 177 aa9.89□□□□□ -0.83
TCOF1-201ENST00000323668 V9GYY9 64 aa9.89□□□□□ -0.83
TCOF1-201ENST00000323668 CFAP47Q6ZTR5 3102 aa9.89□□□□□ -0.83
TCOF1-201ENST00000323668 LRCOL1A6NCL2 159 aa9.89□□□□□ -0.83
TCOF1-201ENST00000323668 IGKV4-1P06312 121 aa9.89□□□□□ -0.83
TCOF1-201ENST00000323668 LINC00208Q96KT6 92 aa9.89□□□□□ -0.83
TCOF1-201ENST00000323668 LINC00167Q96N53 147 aa9.89□□□□□ -0.83
TCOF1-201ENST00000323668 C4orf26Q17RF5 130 aa9.88□□□□□ -0.83
TCOF1-201ENST00000323668 A0A1B0GW54 56 aa9.87□□□□□ -0.83
TCOF1-201ENST00000323668 Q6ZRP5 223 aa9.87□□□□□ -0.83
TCOF1-201ENST00000323668 SMIM29Q86T20 159 aa9.86□□□□□ -0.83
TCOF1-201ENST00000323668 DEFB116Q30KQ4 102 aa9.86□□□□□ -0.83
TCOF1-201ENST00000323668 Q9BRP9 147 aa9.85□□□□□ -0.83
TCOF1-201ENST00000323668 Q6ZRX8 168 aa9.85□□□□□ -0.83
TCOF1-201ENST00000323668 LINC00528Q8N1L1 170 aa9.85□□□□□ -0.83
TCOF1-201ENST00000323668 HCG22E2RYF7 251 aa9.84□□□□□ -0.83
TCOF1-201ENST00000323668 PRLHP81277 87 aa9.84□□□□□ -0.83
TCOF1-201ENST00000323668 Q8NBF4 154 aa9.84□□□□□ -0.83
TCOF1-201ENST00000323668 CHKB-CPT1BH3BT56 60 aa9.83□□□□□ -0.84
TCOF1-201ENST00000323668 LINC00474Q9P2X8 69 aa9.83□□□□□ -0.84
TCOF1-201ENST00000323668 KRTAP10-3P60369 221 aa9.83□□□□□ -0.84
TCOF1-201ENST00000323668 TRBV7-4A0A0J9YYF1 115 aa9.82□□□□□ -0.84
TCOF1-201ENST00000323668 FLNCQ14315 2725 aa9.82□□□□□ -0.84
TCOF1-201ENST00000323668 CASC2Q6XLA1 102 aa9.82□□□□□ -0.84
TCOF1-201ENST00000323668 GCN1Q92616 2671 aaKnown RBP9.82□□□□□ -0.84
TCOF1-201ENST00000323668 IGLV9-49A0A0B4J1Y8 123 aa9.81□□□□□ -0.84
TCOF1-201ENST00000323668 TEX15Q9BXT5 2789 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms