RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 MRPL55Q7Z7F7 128 aaKnown RBP9.64□□□□□ -0.87
C9orf3-202ENST00000297979 UBE2WQ96B02 151 aa9.64□□□□□ -0.87
C9orf3-202ENST00000297979 PRO1854Q9UHT4 67 aa9.64□□□□□ -0.87
C9orf3-202ENST00000297979 TRAV8-4A0A0B4J246 113 aa9.64□□□□□ -0.87
C9orf3-202ENST00000297979 EIF4EBP3O60516 100 aaPredicted RBP9.64□□□□□ -0.87
C9orf3-202ENST00000297979 SERTAD4-AS1Q5TG53 156 aa9.64□□□□□ -0.87
C9orf3-202ENST00000297979 LINC00308Q8TCZ7 52 aa9.64□□□□□ -0.87
C9orf3-202ENST00000297979 COPS9Q8WXC6 57 aa9.64□□□□□ -0.87
C9orf3-202ENST00000297979 LINC01556Q5JQF7 62 aa9.63□□□□□ -0.87
C9orf3-202ENST00000297979 hADV29S1A0JD25 119 aa9.62□□□□□ -0.87
C9orf3-202ENST00000297979 CYSTM1Q9H1C7 97 aa9.62□□□□□ -0.87
C9orf3-202ENST00000297979 IBA57-AS1B1ANH7 110 aa9.61□□□□□ -0.87
C9orf3-202ENST00000297979 KIAA0087Q14695 138 aa9.61□□□□□ -0.87
C9orf3-202ENST00000297979 TCL1BO95988 128 aa9.6□□□□□ -0.87
C9orf3-202ENST00000297979 COX7CP15954 63 aa9.6□□□□□ -0.87
C9orf3-202ENST00000297979 CXCL5P42830 114 aa9.6□□□□□ -0.87
C9orf3-202ENST00000297979 C2orf82Q6UX34 121 aa9.6□□□□□ -0.87
C9orf3-202ENST00000297979 SOSTDC1Q6X4U4 206 aa9.6□□□□□ -0.87
C9orf3-202ENST00000297979 LINC00158P58513 81 aa9.6□□□□□ -0.87
C9orf3-202ENST00000297979 MIR7-3HGQ8N6C7 128 aa9.6□□□□□ -0.87
C9orf3-202ENST00000297979 LINC00588Q9Y4M8 146 aa9.6□□□□□ -0.87
C9orf3-202ENST00000297979 DNAH10OSP0CZ25 163 aa9.59□□□□□ -0.87
C9orf3-202ENST00000297979 CCL18P55774 89 aa9.59□□□□□ -0.87
C9orf3-202ENST00000297979 DNAH9Q9NYC9 4486 aa9.58□□□□□ -0.88
C9orf3-202ENST00000297979 SPAG11BQ08648 103 aa9.57□□□□□ -0.88
C9orf3-202ENST00000297979 LOC107984156A0A0G2JMH3 177 aa9.56□□□□□ -0.88
C9orf3-202ENST00000297979 FAM240AA0A1B0GVK7 77 aa9.56□□□□□ -0.88
C9orf3-202ENST00000297979 USP17L23D6RBM5 183 aa9.56□□□□□ -0.88
C9orf3-202ENST00000297979 H7C2G1 150 aa9.56□□□□□ -0.88
C9orf3-202ENST00000297979 ARL17AQ8IVW1 177 aa9.56□□□□□ -0.88
C9orf3-202ENST00000297979 Q1RN00 199 aa9.56□□□□□ -0.88
C9orf3-202ENST00000297979 KRTAP26-1Q6PEX3 210 aa9.56□□□□□ -0.88
C9orf3-202ENST00000297979 TRBV7-7A0A0K0K1E9 115 aa9.55□□□□□ -0.88
C9orf3-202ENST00000297979 PSMB2P49721 201 aa9.54□□□□□ -0.88
C9orf3-202ENST00000297979 UPK3BQ9BT76 320 aa9.54□□□□□ -0.88
C9orf3-202ENST00000297979 COX17Q14061 63 aa9.53□□□□□ -0.88
C9orf3-202ENST00000297979 COL7A1Q02388 2944 aa9.53□□□□□ -0.88
C9orf3-202ENST00000297979 C6orf223Q8N319 242 aa9.53□□□□□ -0.88
C9orf3-202ENST00000297979 IGKV2D-24A0A075B6R9 120 aa9.52□□□□□ -0.88
C9orf3-202ENST00000297979 SND1-IT1Q9HBX3 110 aa9.52□□□□□ -0.88
C9orf3-202ENST00000297979 RBM12B-AS1Q9P1G2 102 aa9.52□□□□□ -0.89
C9orf3-202ENST00000297979 SCGB1C2P0DMR2 95 aa9.51□□□□□ -0.89
C9orf3-202ENST00000297979 UNQ6190/PRO20217Q6UXQ8 127 aa9.51□□□□□ -0.89
C9orf3-202ENST00000297979 Q9HAA7 133 aa9.51□□□□□ -0.89
C9orf3-202ENST00000297979 TRBV30A0A0K0K1B3 111 aa9.5□□□□□ -0.89
C9orf3-202ENST00000297979 C10orf25Q5T742 122 aa9.5□□□□□ -0.89
C9orf3-202ENST00000297979 NTN5Q8WTR8 489 aaPredicted RBP9.5□□□□□ -0.89
C9orf3-202ENST00000297979 KRTAP21-3Q3LHN1 58 aa9.5□□□□□ -0.89
C9orf3-202ENST00000297979 C9orf116Q5BN46 136 aaPredicted RBP9.5□□□□□ -0.89
C9orf3-202ENST00000297979 TRIAP1O43715 76 aa9.5□□□□□ -0.89
C9orf3-202ENST00000297979 Q6ZRU5 148 aa9.49□□□□□ -0.89
C9orf3-202ENST00000297979 HIGD2BQ4VC39 106 aa9.49□□□□□ -0.89
C9orf3-202ENST00000297979 C15orf56Q8N910 161 aa9.49□□□□□ -0.89
C9orf3-202ENST00000297979 APLNQ9ULZ1 77 aa9.49□□□□□ -0.89
C9orf3-202ENST00000297979 STAB2Q8WWQ8 2551 aa9.49□□□□□ -0.89
C9orf3-202ENST00000297979 EPM2AB3EWF7 344 aa9.48□□□□□ -0.89
C9orf3-202ENST00000297979 GVQW2A0A096LPI5 108 aaPredicted RBP9.48□□□□□ -0.89
C9orf3-202ENST00000297979 TRAV13-2A0A0B4J235 113 aa9.48□□□□□ -0.89
C9orf3-202ENST00000297979 DNHD1Q96M86 4753 aa9.47□□□□□ -0.89
C9orf3-202ENST00000297979 IGKV2-28A0A075B6P5 120 aa9.47□□□□□ -0.89
C9orf3-202ENST00000297979 IGKV2D-28P01615 120 aa9.47□□□□□ -0.89
C9orf3-202ENST00000297979 MUC7Q8TAX7 377 aa9.47□□□□□ -0.89
C9orf3-202ENST00000297979 NUPR2A6NF83 97 aa9.46□□□□□ -0.89
C9orf3-202ENST00000297979 H3BT86 120 aa9.46□□□□□ -0.89
C9orf3-202ENST00000297979 COX6CP09669 75 aa9.46□□□□□ -0.89
C9orf3-202ENST00000297979 FP248Q71RG6 208 aaPredicted RBP9.46□□□□□ -0.89
C9orf3-202ENST00000297979 LINC00337Q8N6G1 96 aa9.46□□□□□ -0.9
C9orf3-202ENST00000297979 CAMK2N2Q96S95 79 aa9.46□□□□□ -0.9
C9orf3-202ENST00000297979 C6orf48Q9UBA6 75 aa9.46□□□□□ -0.9
C9orf3-202ENST00000297979 RMI2Q96E14 147 aa9.46□□□□□ -0.9
C9orf3-202ENST00000297979 UBE2DNLQ8IWF7 75 aa9.45□□□□□ -0.9
C9orf3-202ENST00000297979 IMUPQ9GZP8 106 aa9.45□□□□□ -0.9
C9orf3-202ENST00000297979 ATXN8Q156A1 80 aa9.43□□□□□ -0.9
C9orf3-202ENST00000297979 PRR15Q8IV56 129 aa9.43□□□□□ -0.9
C9orf3-202ENST00000297979 C8orf87E5RJ46 101 aa9.42□□□□□ -0.9
C9orf3-202ENST00000297979 SMIM26A0A096LP01 95 aa9.41□□□□□ -0.9
C9orf3-202ENST00000297979 SERP1Q9Y6X1 66 aa9.41□□□□□ -0.9
C9orf3-202ENST00000297979 DYNC2H1Q8NCM8 4307 aaKnown RBP9.4□□□□□ -0.9
C9orf3-202ENST00000297979 RPL28P46779 137 aaKnown RBP9.4□□□□□ -0.91
C9orf3-202ENST00000297979 CLEC2BQ92478 149 aa9.4□□□□□ -0.91
C9orf3-202ENST00000297979 PRKDCP78527 4128 aaKnown RBP9.4□□□□□ -0.91
C9orf3-202ENST00000297979 CASC10Q5T4H9 136 aa9.39□□□□□ -0.91
C9orf3-202ENST00000297979 KRTAP1-5Q9BYS1 174 aa9.39□□□□□ -0.91
C9orf3-202ENST00000297979 SYCNQ0VAF6 134 aa9.38□□□□□ -0.91
C9orf3-202ENST00000297979 LST1O00453 97 aa9.38□□□□□ -0.91
C9orf3-202ENST00000297979 INAFM2P0DMQ5 153 aa9.38□□□□□ -0.91
C9orf3-202ENST00000297979 SMIM11BQ8TCY0 68 aa9.38□□□□□ -0.91
C9orf3-202ENST00000297979 MEGF8Q7Z7M0 2845 aa9.38□□□□□ -0.91
C9orf3-202ENST00000297979 PRR3P79522 188 aaKnown RBP9.37□□□□□ -0.91
C9orf3-202ENST00000297979 Q8NDZ9 215 aa9.37□□□□□ -0.91
C9orf3-202ENST00000297979 DNAH1Q9P2D7 4330 aa9.37□□□□□ -0.91
C9orf3-202ENST00000297979 NDUFC2-KCTD14E9PQ53 114 aa9.36□□□□□ -0.91
C9orf3-202ENST00000297979 NCR3O14931 201 aa9.36□□□□□ -0.91
C9orf3-202ENST00000297979 XAGE1AQ9HD64 81 aa9.36□□□□□ -0.91
C9orf3-202ENST00000297979 ATOX1O00244 68 aa9.35□□□□□ -0.91
C9orf3-202ENST00000297979 SLC25A20O43772 301 aa9.35□□□□□ -0.91
C9orf3-202ENST00000297979 TRBV10-2A0A0K0K1G8 114 aa9.33□□□□□ -0.92
C9orf3-202ENST00000297979 LECT2O14960 151 aa9.32□□□□□ -0.92
C9orf3-202ENST00000297979 TEX49A0A1B0GTD5 131 aa9.32□□□□□ -0.92
C9orf3-202ENST00000297979 S100A7L2Q5SY68 101 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms