RNA–Protein interactions for RNA: ENST00000642041.1

PHGDH-234, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 943 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-234ENST00000642041 PRR34Q9NV39 138 aa11.73□□□□□ -0.53
PHGDH-234ENST00000642041 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.72□□□□□ -0.53
PHGDH-234ENST00000642041 CRPP02741 224 aa11.72□□□□□ -0.53
PHGDH-234ENST00000642041 CCL18P55774 89 aa11.72□□□□□ -0.53
PHGDH-234ENST00000642041 MIAQ16674 131 aa11.72□□□□□ -0.53
PHGDH-234ENST00000642041 APLNQ9ULZ1 77 aa11.72□□□□□ -0.53
PHGDH-234ENST00000642041 SPANXDQ9BXN6 97 aa11.71□□□□□ -0.53
PHGDH-234ENST00000642041 TTTY13Q9BZ97 58 aa11.71□□□□□ -0.53
PHGDH-234ENST00000642041 SPANXCQ9NY87 97 aa11.71□□□□□ -0.53
PHGDH-234ENST00000642041 APOBP04114 4563 aaKnown RBP11.7□□□□□ -0.54
PHGDH-234ENST00000642041 TRAV8-3A0A0A6YYJ7 113 aa11.7□□□□□ -0.54
PHGDH-234ENST00000642041 COX7A2LO14548 114 aa11.7□□□□□ -0.54
PHGDH-234ENST00000642041 CDK2AP2O75956 126 aa11.7□□□□□ -0.54
PHGDH-234ENST00000642041 PRSS2P07478 247 aa11.7□□□□□ -0.54
PHGDH-234ENST00000642041 LINC01556Q5JQF7 62 aa11.7□□□□□ -0.54
PHGDH-234ENST00000642041 LINC00269Q8N2A0 174 aa11.7□□□□□ -0.54
PHGDH-234ENST00000642041 COX7B2Q8TF08 81 aa11.7□□□□□ -0.54
PHGDH-234ENST00000642041 UBR4Q5T4S7 5183 aa11.7□□□□□ -0.54
PHGDH-234ENST00000642041 Q8IZM0 81 aa11.69□□□□□ -0.54
PHGDH-234ENST00000642041 A0A1B0GWB2 263 aa11.68□□□□□ -0.54
PHGDH-234ENST00000642041 TSPEAR-AS2P59090 65 aa11.68□□□□□ -0.54
PHGDH-234ENST00000642041 C10orf126Q8N4M7 172 aa11.68□□□□□ -0.54
PHGDH-234ENST00000642041 COX11Q9Y6N1 276 aa11.68□□□□□ -0.54
PHGDH-234ENST00000642041 IGHV3-64A0A075B6Q5 118 aa11.67□□□□□ -0.54
PHGDH-234ENST00000642041 IGKV3OR2-268A0A0C4DH90 116 aa11.67□□□□□ -0.54
PHGDH-234ENST00000642041 F8WDY8 70 aa11.67□□□□□ -0.54
PHGDH-234ENST00000642041 MALP21145 153 aa11.67□□□□□ -0.54
PHGDH-234ENST00000642041 Q8N1X5 172 aa11.67□□□□□ -0.54
PHGDH-234ENST00000642041 CHCHD10Q8WYQ3 142 aaPredicted RBP11.67□□□□□ -0.54
PHGDH-234ENST00000642041 IGLL5B9A064 214 aa11.66□□□□□ -0.54
PHGDH-234ENST00000642041 IGHV3-30P01768 117 aa11.66□□□□□ -0.54
PHGDH-234ENST00000642041 IGHV3-30-5P0DP03 117 aa11.66□□□□□ -0.54
PHGDH-234ENST00000642041 ESRGQ1W209 222 aa11.66□□□□□ -0.54
PHGDH-234ENST00000642041 C6orf226Q5I0X4 101 aa11.66□□□□□ -0.54
PHGDH-234ENST00000642041 LYRM7Q5U5X0 104 aa11.66□□□□□ -0.54
PHGDH-234ENST00000642041 Q9H8V8 135 aa11.66□□□□□ -0.54
PHGDH-234ENST00000642041 C9orf118A6NHY6 69 aa11.65□□□□□ -0.54
PHGDH-234ENST00000642041 RMI2Q96E14 147 aa11.65□□□□□ -0.54
PHGDH-234ENST00000642041 ZNF625Q96I27 306 aaPredicted RBP11.65□□□□□ -0.54
PHGDH-234ENST00000642041 UPK3BQ9BT76 320 aa11.65□□□□□ -0.54
PHGDH-234ENST00000642041 IBA57-AS1B1ANH7 110 aa11.64□□□□□ -0.55
PHGDH-234ENST00000642041 DNAH10OSP0CZ25 163 aa11.64□□□□□ -0.55
PHGDH-234ENST00000642041 XCL1P47992 114 aa11.64□□□□□ -0.55
PHGDH-234ENST00000642041 COX17Q14061 63 aa11.64□□□□□ -0.55
PHGDH-234ENST00000642041 CFAP161Q6P656 301 aa11.64□□□□□ -0.55
PHGDH-234ENST00000642041 TAX1BP3O14907 124 aa11.63□□□□□ -0.55
PHGDH-234ENST00000642041 KLK12Q9UKR0 248 aa11.63□□□□□ -0.55
PHGDH-234ENST00000642041 A0A0B4J2C4 111 aa11.62□□□□□ -0.55
PHGDH-234ENST00000642041 A0A1B0GV90 55 aa11.62□□□□□ -0.55
PHGDH-234ENST00000642041 FXYD2P54710 66 aa11.62□□□□□ -0.55
PHGDH-234ENST00000642041 CKS1BP61024 79 aa11.62□□□□□ -0.55
PHGDH-234ENST00000642041 MEIG1Q5JSS6 88 aa11.62□□□□□ -0.55
PHGDH-234ENST00000642041 C5orf38Q86SI9 138 aa11.62□□□□□ -0.55
PHGDH-234ENST00000642041 NHP2Q9NX24 153 aaKnown RBP11.62□□□□□ -0.55
PHGDH-234ENST00000642041 DNAH5Q8TE73 4624 aa11.62□□□□□ -0.55
PHGDH-234ENST00000642041 GTF2H5Q6ZYL4 71 aa11.61□□□□□ -0.55
PHGDH-234ENST00000642041 M0R2N4 97 aa11.6□□□□□ -0.55
PHGDH-234ENST00000642041 RAB37Q96AX2 223 aa11.59□□□□□ -0.55
PHGDH-234ENST00000642041 UBE2WQ96B02 151 aa11.59□□□□□ -0.55
PHGDH-234ENST00000642041 C1orf43Q9BWL3 253 aa11.59□□□□□ -0.55
PHGDH-234ENST00000642041 TOMM7Q9P0U1 55 aa11.59□□□□□ -0.55
PHGDH-234ENST00000642041 C16orf90A8MZG2 172 aa11.58□□□□□ -0.56
PHGDH-234ENST00000642041 FABP2P12104 132 aa11.58□□□□□ -0.56
PHGDH-234ENST00000642041 FOXI1Q12951 378 aa11.58□□□□□ -0.56
PHGDH-234ENST00000642041 ENHOQ6UWT2 76 aa11.58□□□□□ -0.56
PHGDH-234ENST00000642041 MUSTN1Q8IVN3 82 aa11.58□□□□□ -0.56
PHGDH-234ENST00000642041 LITAFQ99732 161 aa11.58□□□□□ -0.56
PHGDH-234ENST00000642041 PRO1854Q9UHT4 67 aa11.58□□□□□ -0.56
PHGDH-234ENST00000642041 IGHV3-33P01772 117 aa11.57□□□□□ -0.56
PHGDH-234ENST00000642041 VAMP3Q15836 100 aa11.57□□□□□ -0.56
PHGDH-234ENST00000642041 WFDC10BQ8IUB3 73 aa11.57□□□□□ -0.56
PHGDH-234ENST00000642041 GAGE12HA6NDE8 117 aa11.56□□□□□ -0.56
PHGDH-234ENST00000642041 A4D1N5 150 aa11.54□□□□□ -0.56
PHGDH-234ENST00000642041 CLPSL2Q6UWE3 100 aa11.54□□□□□ -0.56
PHGDH-234ENST00000642041 SRRM2Q9UQ35 2752 aaKnown RBP11.53□□□□□ -0.56
PHGDH-234ENST00000642041 GVQW2A0A096LPI5 108 aaPredicted RBP11.53□□□□□ -0.56
PHGDH-234ENST00000642041 UBE2V1Q13404 147 aa11.53□□□□□ -0.56
PHGDH-234ENST00000642041 LINC00308Q8TCZ7 52 aa11.53□□□□□ -0.56
PHGDH-234ENST00000642041 LINC00588Q9Y4M8 146 aa11.53□□□□□ -0.56
PHGDH-234ENST00000642041 A0A1W2PPM0 123 aa11.52□□□□□ -0.57
PHGDH-234ENST00000642041 GAGE10A6NGK3 116 aa11.52□□□□□ -0.57
PHGDH-234ENST00000642041 H3BUT2 72 aa11.52□□□□□ -0.57
PHGDH-234ENST00000642041 COX6CP09669 75 aa11.52□□□□□ -0.57
PHGDH-234ENST00000642041 CFC1BP0CG36 223 aa11.52□□□□□ -0.57
PHGDH-234ENST00000642041 CFC1P0CG37 223 aa11.52□□□□□ -0.57
PHGDH-234ENST00000642041 LINC00158P58513 81 aa11.52□□□□□ -0.57
PHGDH-234ENST00000642041 Q6ZR54 194 aa11.52□□□□□ -0.57
PHGDH-234ENST00000642041 C2orf48Q96LS8 159 aa11.52□□□□□ -0.57
PHGDH-234ENST00000642041 ERG28Q9UKR5 140 aa11.52□□□□□ -0.57
PHGDH-234ENST00000642041 IGLV10-54A0A075B6I4 117 aa11.51□□□□□ -0.57
PHGDH-234ENST00000642041 TRBV20-1A0A075B6N2 111 aa11.51□□□□□ -0.57
PHGDH-234ENST00000642041 LOC107984156A0A0G2JMH3 177 aa11.51□□□□□ -0.57
PHGDH-234ENST00000642041 ZNF561-AS1K7EIQ3 104 aa11.51□□□□□ -0.57
PHGDH-234ENST00000642041 KIAA0087Q14695 138 aa11.51□□□□□ -0.57
PHGDH-234ENST00000642041 ARL17AQ8IVW1 177 aa11.51□□□□□ -0.57
PHGDH-234ENST00000642041 MYCBP2O75592 4640 aa11.5□□□□□ -0.57
PHGDH-234ENST00000642041 TRAV13-2A0A0B4J235 113 aa11.5□□□□□ -0.57
PHGDH-234ENST00000642041 SPAG11BQ08648 103 aa11.5□□□□□ -0.57
PHGDH-234ENST00000642041 ADAMTSL4-AS1Q5T5F5 129 aa11.5□□□□□ -0.57
PHGDH-234ENST00000642041 TRBV30A0A0K0K1B3 111 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms