RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 M0QXV9 152 aa12.65□□□□□ -0.38
CLN3-263ENST00000637871 EIF4EBP3O60516 100 aaPredicted RBP12.65□□□□□ -0.38
CLN3-263ENST00000637871 WFDC2Q14508 124 aa12.63□□□□□ -0.39
CLN3-263ENST00000637871 CD164L2Q6UWJ8 174 aa12.63□□□□□ -0.39
CLN3-263ENST00000637871 TCL1BO95988 128 aa12.62□□□□□ -0.39
CLN3-263ENST00000637871 ATXN8Q156A1 80 aa12.62□□□□□ -0.39
CLN3-263ENST00000637871 Q8IZM0 81 aa12.62□□□□□ -0.39
CLN3-263ENST00000637871 A0A0J9YWU9 116 aa12.62□□□□□ -0.39
CLN3-263ENST00000637871 A0A096LPF7 62 aa12.61□□□□□ -0.39
CLN3-263ENST00000637871 CXCL5P42830 114 aa12.61□□□□□ -0.39
CLN3-263ENST00000637871 TOMM7Q9P0U1 55 aa12.61□□□□□ -0.39
CLN3-263ENST00000637871 C6orf226Q5I0X4 101 aa12.6□□□□□ -0.39
CLN3-263ENST00000637871 C5orf38Q86SI9 138 aa12.6□□□□□ -0.39
CLN3-263ENST00000637871 LINC01600Q96MT4 127 aa12.59□□□□□ -0.39
CLN3-263ENST00000637871 H7C2G1 150 aa12.59□□□□□ -0.39
CLN3-263ENST00000637871 ANGP03950 147 aaKnown RBP12.59□□□□□ -0.39
CLN3-263ENST00000637871 HTN3P15516 51 aa12.59□□□□□ -0.39
CLN3-263ENST00000637871 REG3AQ06141 175 aa12.59□□□□□ -0.39
CLN3-263ENST00000637871 LINC00269Q8N2A0 174 aa12.59□□□□□ -0.39
CLN3-263ENST00000637871 COX7A2LO14548 114 aa12.58□□□□□ -0.4
CLN3-263ENST00000637871 RPL13AP40429 203 aaKnown RBP12.58□□□□□ -0.4
CLN3-263ENST00000637871 XCL1P47992 114 aa12.58□□□□□ -0.4
CLN3-263ENST00000637871 DAND5Q8N907 189 aa12.58□□□□□ -0.4
CLN3-263ENST00000637871 DNAH7Q8WXX0 4024 aa12.57□□□□□ -0.4
CLN3-263ENST00000637871 TRAV13-2A0A0B4J235 113 aa12.57□□□□□ -0.4
CLN3-263ENST00000637871 NPC2P61916 151 aa12.57□□□□□ -0.4
CLN3-263ENST00000637871 VPS25Q9BRG1 176 aa12.57□□□□□ -0.4
CLN3-263ENST00000637871 TRIAP1O43715 76 aa12.56□□□□□ -0.4
CLN3-263ENST00000637871 RNF151Q2KHN1 245 aa12.56□□□□□ -0.4
CLN3-263ENST00000637871 ETDBQ3ZM63 59 aa12.56□□□□□ -0.4
CLN3-263ENST00000637871 CHCHD10Q8WYQ3 142 aaPredicted RBP12.56□□□□□ -0.4
CLN3-263ENST00000637871 LINC00158P58513 81 aa12.55□□□□□ -0.4
CLN3-263ENST00000637871 MUC7Q8TAX7 377 aa12.55□□□□□ -0.4
CLN3-263ENST00000637871 COX17Q14061 63 aa12.55□□□□□ -0.4
CLN3-263ENST00000637871 LYPD5Q6UWN5 251 aa12.55□□□□□ -0.4
CLN3-263ENST00000637871 SOSTDC1Q6X4U4 206 aa12.55□□□□□ -0.4
CLN3-263ENST00000637871 MIR7-3HGQ8N6C7 128 aa12.55□□□□□ -0.4
CLN3-263ENST00000637871 PRR34Q9NV39 138 aa12.54□□□□□ -0.4
CLN3-263ENST00000637871 TRAV8-4A0A0B4J246 113 aa12.53□□□□□ -0.4
CLN3-263ENST00000637871 A0A0U1RRA0 63 aa12.53□□□□□ -0.4
CLN3-263ENST00000637871 SMCPP49901 116 aaPredicted RBP12.53□□□□□ -0.4
CLN3-263ENST00000637871 LINC01620Q4KN68 170 aa12.53□□□□□ -0.4
CLN3-263ENST00000637871 CFAP161Q6P656 301 aa12.53□□□□□ -0.4
CLN3-263ENST00000637871 TEN1Q86WV5 123 aa12.53□□□□□ -0.4
CLN3-263ENST00000637871 MALP21145 153 aa12.52□□□□□ -0.4
CLN3-263ENST00000637871 CKS1BP61024 79 aa12.52□□□□□ -0.4
CLN3-263ENST00000637871 SLC25A20O43772 301 aa12.51□□□□□ -0.41
CLN3-263ENST00000637871 KLK5Q9Y337 293 aaPredicted RBP12.51□□□□□ -0.41
CLN3-263ENST00000637871 TRBV10-2A0A0K0K1G8 114 aa12.51□□□□□ -0.41
CLN3-263ENST00000637871 NANOS2P60321 138 aaKnown RBP12.51□□□□□ -0.41
CLN3-263ENST00000637871 PPDPFLQ8WWR9 84 aa12.51□□□□□ -0.41
CLN3-263ENST00000637871 SND1-IT1Q9HBX3 110 aa12.51□□□□□ -0.41
CLN3-263ENST00000637871 C9JAW5 83 aa12.5□□□□□ -0.41
CLN3-263ENST00000637871 LST1O00453 97 aa12.49□□□□□ -0.41
CLN3-263ENST00000637871 CRPP02741 224 aa12.49□□□□□ -0.41
CLN3-263ENST00000637871 FOXI1Q12951 378 aa12.49□□□□□ -0.41
CLN3-263ENST00000637871 CLPSL2Q6UWE3 100 aa12.49□□□□□ -0.41
CLN3-263ENST00000637871 CSMD3Q7Z407 3707 aa12.49□□□□□ -0.41
CLN3-263ENST00000637871 H3BT86 120 aa12.48□□□□□ -0.41
CLN3-263ENST00000637871 KIAA0087Q14695 138 aa12.48□□□□□ -0.41
CLN3-263ENST00000637871 ANKRD29Q8N6D5 301 aa12.48□□□□□ -0.41
CLN3-263ENST00000637871 C11orf45Q8TAV5 145 aa12.48□□□□□ -0.41
CLN3-263ENST00000637871 CCL18P55774 89 aa12.47□□□□□ -0.41
CLN3-263ENST00000637871 MTURNQ8N3F0 131 aa12.47□□□□□ -0.41
CLN3-263ENST00000637871 RPL28P46779 137 aaKnown RBP12.46□□□□□ -0.41
CLN3-263ENST00000637871 Q6ZTC4 211 aa12.46□□□□□ -0.41
CLN3-263ENST00000637871 STARD9Q9P2P6 4700 aa12.45□□□□□ -0.42
CLN3-263ENST00000637871 CARD19Q96LW7 228 aa12.45□□□□□ -0.42
CLN3-263ENST00000637871 KLK12Q9UKR0 248 aa12.45□□□□□ -0.42
CLN3-263ENST00000637871 GAGE12HA6NDE8 117 aa12.44□□□□□ -0.42
CLN3-263ENST00000637871 PFN2P35080 140 aa12.44□□□□□ -0.42
CLN3-263ENST00000637871 WWC2-AS2Q96NR7 200 aa12.44□□□□□ -0.42
CLN3-263ENST00000637871 DEFB131BA0A096LNP1 70 aa12.44□□□□□ -0.42
CLN3-263ENST00000637871 NDUFC2O95298 119 aa12.44□□□□□ -0.42
CLN3-263ENST00000637871 TRACP01848 142 aa12.43□□□□□ -0.42
CLN3-263ENST00000637871 IGLV10-54A0A075B6I4 117 aa12.42□□□□□ -0.42
CLN3-263ENST00000637871 ENHOQ6UWT2 76 aa12.42□□□□□ -0.42
CLN3-263ENST00000637871 H0YGX0 51 aa12.41□□□□□ -0.42
CLN3-263ENST00000637871 C15orf53Q8NAA6 179 aa12.41□□□□□ -0.42
CLN3-263ENST00000637871 IGKV2-28A0A075B6P5 120 aa12.4□□□□□ -0.42
CLN3-263ENST00000637871 IGKV2D-28P01615 120 aa12.4□□□□□ -0.42
CLN3-263ENST00000637871 C2orf82Q6UX34 121 aa12.4□□□□□ -0.42
CLN3-263ENST00000637871 GVQW2A0A096LPI5 108 aaPredicted RBP12.4□□□□□ -0.42
CLN3-263ENST00000637871 SPAG11BQ08648 103 aa12.4□□□□□ -0.42
CLN3-263ENST00000637871 Q8N3U1 123 aa12.4□□□□□ -0.42
CLN3-263ENST00000637871 DYNC2H1Q8NCM8 4307 aaKnown RBP12.39□□□□□ -0.43
CLN3-263ENST00000637871 TRAV10A0A0B4J240 114 aa12.39□□□□□ -0.43
CLN3-263ENST00000637871 F8WDY8 70 aa12.39□□□□□ -0.43
CLN3-263ENST00000637871 LINC00337Q8N6G1 96 aa12.39□□□□□ -0.43
CLN3-263ENST00000637871 CLEC2BQ92478 149 aa12.39□□□□□ -0.43
CLN3-263ENST00000637871 LINC01556Q5JQF7 62 aa12.38□□□□□ -0.43
CLN3-263ENST00000637871 UBE2WQ96B02 151 aa12.38□□□□□ -0.43
CLN3-263ENST00000637871 ESRGQ1W209 222 aa12.37□□□□□ -0.43
CLN3-263ENST00000637871 WFDC10BQ8IUB3 73 aa12.35□□□□□ -0.43
CLN3-263ENST00000637871 PLECQ15149 4684 aaKnown RBP12.35□□□□□ -0.43
CLN3-263ENST00000637871 TENM2Q9NT68 2774 aa12.35□□□□□ -0.43
CLN3-263ENST00000637871 SIGMAR1Q99720 223 aa12.34□□□□□ -0.43
CLN3-263ENST00000637871 SMIM11BQ8TCY0 68 aa12.33□□□□□ -0.43
CLN3-263ENST00000637871 NTN5Q8WTR8 489 aaPredicted RBP12.33□□□□□ -0.43
CLN3-263ENST00000637871 TMEM126AQ9H061 195 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms